Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0012837

Physical Location & Seq

Genomic Coordinates Forward (+)

32108441 .. 32110866

Gene Structure 2426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1182400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCGACAGCAGGCGAGATTCTCAGGCGGAATCTGACCGAAGGTTTTGATCTTTCCGGTGATTCGCAGATGCGTTCCGGCGAGCTGCATGTTCTTGCTGTGGATGACAGCCACGTGGACCGGAAGGTCATTGAACGCCTGCTCAAGATATCATCCTGCAAAGTGACGGCTGTTGACAGTGGGACGAGAGCGCTGCAATATCTGGGCTTGGATGGAGAGAAGAGCTCGGTTGGGTTTGATAACATGAAGGTGAATTTGATCATAACGGACTACTCAATGCCAGGGATGACAGGATATGAACTGCTAAAGAAAATCAAGGAATCATCGGCTTTTCGAGAAGTTCCGGTGGTGATCATGTCATCGGAGAACATCCTGACTCGAATTGATAGATGCTTAGAGGAAGGAGCTGAGGACTATATAGTGAAGCCGGTGAAGCTTTCCGACGTGAACCGGTTGAAAAACGTCATGATGGGAGGAGGAGAAAGAAAAGAAACTGAAGAGAAAGAAAATCACAAAAGAACATTTTCAGTTGAATACAACGCATCATCAACTCCCTCCCCTTTACCGCAGCTTTCGCAACCGTTCGCTTGCAATCTAGCATCGTCTCAGCTGCCACCTTTGTCGCCATCATCGCCGTTGCCATGTTCGTCATCAAAGAGACCGAGATTGCACAAGATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010114 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:0098727 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

228

Amino Acids

25.09

Weight (kDa)

6.46

Isoelectric Point (pI)

65.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	31 - 148	9.1e-22	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0012837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48100 AT5G62920
fragaria_vesca	FvH4_5g16240
malus_domestica	MD06G1182400.v1.1 MD14G1188400.v1.1
prunus_persica	Prupe.5G180500_v2.0.a1 Prupe.5G180500_v2.0.a1
pyrus_communis	pycom06g16130 pycom14g15610
rosa_chinensis	RchiOBHm_Chr7g0179851
rosa_laevigata	RLG00000005318
rosa_roxburghii	Rroxscaffold_3G00273400
rosa_rugosa	Rorug06G0428800
rosa_samantha	Rh7AG028600 Rh7BG027800 Rh7CG029500 Rh7DG028900
rosa_wichuraiana	Rw7G002290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	125
AciI	CCGC	2 cut(s)	28, 566
AcsI	RAATTY	1 cut(s)	253
AcuI	CTGAAG	1 cut(s)	516
AcvI	CACGTG	1 cut(s)	115
AfeI	AGCGCT	1 cut(s)	192
AgeI	ACCGGT	1 cut(s)	450
AgsI	TTSAA	3 cut(s)	134, 457, 533
AjiI	CACGTC	1 cut(s)	445
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	6 cut(s)	85, 225, 407, 436, 571, 610
AluI	AGCT	6 cut(s)	85, 225, 407, 436, 571, 610
Alw21I	GWGCWC	1 cut(s)	227
Alw26I	GTCTC	2 cut(s)	609, 652
Aor51HI	AGCGCT	1 cut(s)	192
ApeKI	GCWGC	4 cut(s)	85, 193, 568, 610
ApoI	RAATTY	1 cut(s)	253
AsiGI	ACCGGT	1 cut(s)	450
Asp700I	GAANNNNTTC	1 cut(s)	523
AspLEI	GCGC	1 cut(s)	193
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	4 cut(s)	71, 262, 361, 442
AvaII	GGWCC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	227
BbrPI	CACGTG	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	227
BbvCI	CCTCAGC	1 cut(s)	408
BbvI	GCAGC	4 cut(s)	72, 180, 580, 597
BccI	CCATC	4 cut(s)	206, 463, 634, 670
BceAI	ACGGC	2 cut(s)	183, 619
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BciT130I	CCWGG	1 cut(s)	282
BclI	TGATCA	2 cut(s)	258, 351
BcoDI	GTCTC	2 cut(s)	609, 652
BfaI	CTAG	1 cut(s)	596
BfoI	RGCGCY	1 cut(s)	194
BisI	GCNGC	4 cut(s)	86, 194, 569, 611
BlsI	GCNGC	4 cut(s)	87, 195, 570, 612
Bme1390I	CCNGG	1 cut(s)	282
Bme18I	GGWCC	1 cut(s)	118
BmgBI	CACGTC	1 cut(s)	445
BmgT120I	GGNCC	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	282
BmsI	GCATC	4 cut(s)	60, 380, 551, 608
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
Bpu10I	CCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	128
BsaAI	YACGTR	1 cut(s)	115
BsaI	GGTCTC	1 cut(s)	652
BsaJI	CCNNGG	1 cut(s)	281
BsaWI	WCCGGW	4 cut(s)	56, 120, 343, 450
Bse118I	RCCGGY	2 cut(s)	427, 450
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	281
BseGI	GGATG	5 cut(s)	109, 152, 217, 291, 369
BseMII	CTCAG	3 cut(s)	37, 399, 620
BseRI	GAGGAG	2 cut(s)	489, 492
BseXI	GCAGC	4 cut(s)	72, 180, 580, 597
BshTI	ACCGGT	1 cut(s)	450
BsiHKAI	GWGCWC	1 cut(s)	227
BsiSI	CCGG	6 cut(s)	57, 78, 121, 344, 428, 451
BslFI	GGGAC	1 cut(s)	196
BsmAI	GTCTC	2 cut(s)	609, 652
BsmBI	CGTCTC	1 cut(s)	609
BsmFI	GGGAC	1 cut(s)	196
Bso31I	GGTCTC	1 cut(s)	652
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	3 cut(s)	49, 258, 351
BspACI	CCGC	2 cut(s)	28, 566
BspCNI	CTCAG	3 cut(s)	36, 400, 619
BspHI	TCATGA	1 cut(s)	465
BspQI	GCTCTTC	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	652
BsrFI	RCCGGY	2 cut(s)	427, 450
BssAI	RCCGGY	2 cut(s)	427, 450
BssECI	CCNNGG	1 cut(s)	281
BssMI	GATC	3 cut(s)	49, 258, 351
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	2 cut(s)	179, 582
Bst6I	CTCTTC	2 cut(s)	215, 492
BstBAI	YACGTR	1 cut(s)	115
BstC8I	GCNNGC	4 cut(s)	13, 83, 140, 589
BstDEI	CTNAG	4 cut(s)	23, 394, 408, 606
BstF5I	GGATG	5 cut(s)	109, 152, 217, 291, 369
BstH2I	RGCGCY	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	193
BstKTI	GATC	3 cut(s)	52, 261, 354
BstMAI	GTCTC	2 cut(s)	609, 652
BstMBI	GATC	3 cut(s)	49, 258, 351
BstMWI	GCNNNNNNNGC	3 cut(s)	433, 574, 631
BstNI	CCWGG	1 cut(s)	282
BstNSI	RCATGY	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	280
BstV1I	GCAGC	4 cut(s)	72, 180, 580, 597
BtgZI	GCGATG	1 cut(s)	615
BtrI	CACGTC	1 cut(s)	445
BtsCI	GGATG	5 cut(s)	109, 152, 217, 291, 369
BtsIMutI	CAGTG	1 cut(s)	184
Cac8I	GCNNGC	4 cut(s)	13, 83, 140, 589
CciI	TCATGA	1 cut(s)	465
CfoI	GCGC	1 cut(s)	193
Cfr10I	RCCGGY	2 cut(s)	427, 450
Cfr13I	GGNCC	1 cut(s)	118
CspAI	ACCGGT	1 cut(s)	450
CviAII	CATG	5 cut(s)	89, 244, 355, 466, 642
DdeI	CTNAG	4 cut(s)	23, 394, 408, 606
DpnI	GATC	3 cut(s)	51, 260, 353
DpnII	GATC	3 cut(s)	49, 258, 351
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
Eam1104I	CTCTTC	2 cut(s)	215, 492
EarI	CTCTTC	2 cut(s)	215, 492
EciI	GGCGGA	1 cut(s)	43
Ecl136II	GAGCTC	1 cut(s)	225
Eco24I	GRGCYC	1 cut(s)	227
Eco31I	GGTCTC	1 cut(s)	652
Eco32I	GATATC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	118
Eco47III	AGCGCT	1 cut(s)	192
Eco53kI	GAGCTC	1 cut(s)	225
Eco57I	CTGAAG	1 cut(s)	516
Eco72I	CACGTG	1 cut(s)	115
EcoICRI	GAGCTC	1 cut(s)	225
EcoRII	CCWGG	1 cut(s)	280
EcoRV	GATATC	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	227
Esp3I	CGTCTC	1 cut(s)	609
FaeI	CATG	5 cut(s)	92, 247, 358, 469, 645
FaiI	YATR	9 cut(s)	90, 245, 263, 297, 356, 417, 419, 467, 643
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	5 cut(s)	88, 243, 354, 465, 641
FbaI	TGATCA	2 cut(s)	258, 351
Fnu4HI	GCNGC	4 cut(s)	86, 194, 569, 611
FokI	GGATG	5 cut(s)	116, 139, 224, 298, 356
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	4 cut(s)	86, 194, 569, 611
FspBI	CTAG	1 cut(s)	596
GlaI	GCGC	1 cut(s)	192
GluI	GCNGC	4 cut(s)	86, 194, 569, 611
HaeII	RGCGCY	1 cut(s)	194
HapII	CCGG	6 cut(s)	57, 78, 121, 344, 428, 451
HhaI	GCGC	1 cut(s)	193
Hin1II	CATG	5 cut(s)	92, 247, 358, 469, 645
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	5 cut(s)	19, 31, 62, 320, 376
HpaII	CCGG	6 cut(s)	57, 78, 121, 344, 428, 451
HphI	GGTGA	4 cut(s)	71, 262, 361, 442
Hpy166II	GTNNAC	3 cut(s)	118, 175, 448
Hpy188I	TCNGA	3 cut(s)	36, 364, 442
Hpy188III	TCNNGA	4 cut(s)	145, 335, 373, 466
Hpy8I	GTNNAC	3 cut(s)	118, 175, 448
Hpy99I	CGWCG	1 cut(s)	446
HpyAV	CCTTC	4 cut(s)	35, 118, 241, 395
HpyCH4III	ACNGT	2 cut(s)	179, 582
HpyCH4IV	ACGT	3 cut(s)	114, 444, 462
HpyCH4V	TGCA	5 cut(s)	88, 159, 196, 591, 670
HpyF10VI	GCNNNNNNNGC	3 cut(s)	433, 574, 631
HpyF3I	CTNAG	4 cut(s)	23, 394, 408, 606
HpySE526I	ACGT	3 cut(s)	114, 444, 462
Hsp92II	CATG	5 cut(s)	92, 247, 358, 469, 645
HspAI	GCGC	1 cut(s)	191
Ksp22I	TGATCA	2 cut(s)	258, 351
Kzo9I	GATC	3 cut(s)	49, 258, 351
LguI	GCTCTTC	1 cut(s)	215
LmnI	GCTCC	1 cut(s)	404
Lsp1109I	GCAGC	4 cut(s)	72, 180, 580, 597
LweI	GCATC	4 cut(s)	60, 380, 551, 608
MaeI	CTAG	1 cut(s)	596
MaeII	ACGT	3 cut(s)	114, 444, 462
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	3 cut(s)	51, 260, 353
MboI	GATC	3 cut(s)	49, 258, 351
MboII	GAAGA	2 cut(s)	232, 509
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	2 cut(s)	253, 381
MlyI	GAGTC	1 cut(s)	370
MmeI	TCCRAC	1 cut(s)	465
MnlI	CCTC	5 cut(s)	391, 403, 467, 470, 565
MroXI	GAANNNNTTC	1 cut(s)	523
MslI	CAYNNNNRTG	1 cut(s)	248
MspA1I	CMGCKG	1 cut(s)	610
MspI	CCGG	6 cut(s)	57, 78, 121, 344, 428, 451
MspR9I	CCNGG	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	3 cut(s)	433, 574, 631
NdeII	GATC	3 cut(s)	49, 258, 351
NlaIII	CATG	5 cut(s)	92, 247, 358, 469, 645
NmuCI	GTSAC	1 cut(s)	163
NspI	RCATGY	1 cut(s)	92
PagI	TCATGA	1 cut(s)	465
PciSI	GCTCTTC	1 cut(s)	215
PdmI	GAANNNNTTC	1 cut(s)	523
PfeI	GAWTC	4 cut(s)	19, 31, 62, 320
PinAI	ACCGGT	1 cut(s)	450
PkrI	GCNGC	4 cut(s)	87, 195, 570, 612
PleI	GAGTC	1 cut(s)	370
PmaCI	CACGTG	1 cut(s)	115
PmlI	CACGTG	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	370
Ppu21I	YACGTR	1 cut(s)	115
Psp124BI	GAGCTC	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	280
PspCI	CACGTG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	280
PspPI	GGNCC	1 cut(s)	118
PvuII	CAGCTG	1 cut(s)	610
RseI	CAYNNNNRTG	1 cut(s)	248
SacI	GAGCTC	1 cut(s)	227
SapI	GCTCTTC	1 cut(s)	215
SatI	GCNGC	4 cut(s)	86, 194, 569, 611
Sau3AI	GATC	3 cut(s)	49, 258, 351
Sau96I	GGNCC	1 cut(s)	118
SchI	GAGTC	1 cut(s)	370
ScrFI	CCNGG	1 cut(s)	282
SduI	GDGCHC	1 cut(s)	227
SfaNI	GCATC	4 cut(s)	60, 380, 551, 608
SinI	GGWCC	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	2 cut(s)	253, 381
SsiI	CCGC	2 cut(s)	28, 566
SspMI	CTAG	1 cut(s)	596
SstI	GAGCTC	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	280
TaaI	ACNGT	2 cut(s)	179, 582
TaiI	ACGT	3 cut(s)	117, 447, 465
TaqI	TCGA	2 cut(s)	334, 379
TaqII	GACCGA	2 cut(s)	53, 676
TasI	AATT	2 cut(s)	253, 381
TfiI	GAWTC	4 cut(s)	19, 31, 62, 320
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	4 cut(s)	85, 193, 568, 610
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	2 cut(s)	260, 312
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	118
XapI	RAATTY	1 cut(s)	253
XceI	RCATGY	1 cut(s)	92
XmnI	GAANNNNTTC	1 cut(s)	523
XspI	CTAG	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.