Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0012837

Physical Location & Seq

Genomic Coordinates Forward (+)

1930890 .. 1932848

Gene Structure 1959 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG027800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCCACCGCCGGTGAGGTTTTACGGCGAAATGTGTCGGAAATTACTGCTGTTGAGAGTGGAACCAGGGCTCTGCAGTATCTGGGCTTGGATGGAGAGAAGAAGAGCTCAGTTGGATTTGATGGTATGAAGGTGAATCTAATAATAACAGACTACTCAATGCCTGGGATGACAGGTTATGAGCTGCTAAAAAAGATCAAGGAATCATCAGCTTTTAGAGAAGTTCCAGTGGTGATCATGTCCTCAGAGAACATCCTCACTCGAATCGATAGATGTTTGGAGGAAGGAGCCGAAGAGTTTATAGTAAAGCCGGTAAAACTTTCAGATGTGAACCGCTTGAAAAATTTCATGATGGGAGGAGAAAGAAAAGAGAATGGAGTGAAGAAGGTTCAGAAAAGACCGCTTCAAGTTGACTATAACAATTCTTCATCGCCACCCTCGCCTTTACCACAATTGTCACCATCATTTGCTTGTAATCTAGCATCACTTCACTCATCACCATCTTCATCGCCATCATCTCCCCTACAACATCTGGCTTCAAAGAGACCTAGATTGCACACCATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010114 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:0098727 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

189

Amino Acids

20.78

Weight (kDa)

9.07

Isoelectric Point (pI)

67.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	7 - 109	2.2e-15	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48100 AT5G62920
fragaria_vesca	FvH4_5g16240
malus_domestica	MD06G1182400.v1.1 MD14G1188400.v1.1
prunus_persica	Prupe.5G180500_v2.0.a1 Prupe.5G180500_v2.0.a1
pyrus_communis	pycom06g16130 pycom14g15610
rosa_chinensis	RchiOBHm_Chr7g0179851
rosa_laevigata	RLG00000005318
rosa_roxburghii	Rroxscaffold_3G00273400
rosa_rugosa	Rorug06G0428800
rosa_samantha	Rh7AG028600 Rh7BG027800 Rh7CG029500 Rh7DG028900
rosa_wichuraiana	Rw7G002290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	9, 334, 401
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	343
AgsI	TTSAA	3 cut(s)	340, 407, 540
AjnI	CCWGG	2 cut(s)	65, 163
AluBI	AGCT	3 cut(s)	108, 184, 212
AluI	AGCT	3 cut(s)	108, 184, 212
Alw21I	GWGCWC	1 cut(s)	110
Alw26I	GTCTC	1 cut(s)	538
AlwNI	CAGNNNCTG	1 cut(s)	82
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	184
ApoI	RAATTY	1 cut(s)	343
Asp700I	GAANNNNTTC	1 cut(s)	344
AsuHPI	GGTGA	5 cut(s)	26, 145, 244, 450, 489
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	73, 110
Bbv12I	GWGCWC	1 cut(s)	110
BbvI	GCAGC	1 cut(s)	171
BccI	CCATC	6 cut(s)	86, 116, 346, 469, 508, 520
BceAI	ACGGC	1 cut(s)	41
BciT130I	CCWGG	2 cut(s)	67, 165
BclI	TGATCA	1 cut(s)	234
BcoDI	GTCTC	1 cut(s)	538
BfaI	CTAG	2 cut(s)	479, 549
BfmI	CTRYAG	1 cut(s)	74
BisI	GCNGC	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	186
Bme1390I	CCNGG	2 cut(s)	67, 165
BmiI	GGNNCC	2 cut(s)	64, 289
BmrFI	CCNGG	2 cut(s)	67, 165
BmsI	GCATC	1 cut(s)	491
Bsa29I	ATCGAT	1 cut(s)	267
BsaI	GGTCTC	1 cut(s)	538
BsaJI	CCNNGG	3 cut(s)	66, 164, 561
Bse118I	RCCGGY	2 cut(s)	11, 310
Bse1I	ACTGG	1 cut(s)	227
BseBI	CCWGG	2 cut(s)	67, 165
BseCI	ATCGAT	1 cut(s)	267
BseDI	CCNNGG	3 cut(s)	66, 164, 561
BseGI	GGATG	3 cut(s)	97, 174, 252
BseMII	CTCAG	2 cut(s)	123, 258
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	1 cut(s)	372
BseXI	GCAGC	1 cut(s)	171
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	267
BsiHKAI	GWGCWC	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	12, 311
BsmAI	GTCTC	1 cut(s)	538
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	538
Bsp1286I	GDGCHC	2 cut(s)	73, 110
Bsp143I	GATC	2 cut(s)	195, 234
Bsp19I	CCATGG	1 cut(s)	561
BspACI	CCGC	3 cut(s)	9, 334, 401
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	122, 257
BspDI	ATCGAT	1 cut(s)	267
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	2 cut(s)	64, 289
BspMAI	CTGCAG	1 cut(s)	78
BspQI	GCTCTTC	1 cut(s)	98
BspTNI	GGTCTC	1 cut(s)	538
BsrFI	RCCGGY	2 cut(s)	11, 310
BsrI	ACTGG	1 cut(s)	227
BssAI	RCCGGY	2 cut(s)	11, 310
BssECI	CCNNGG	3 cut(s)	66, 164, 561
BssMI	GATC	2 cut(s)	195, 234
BssT1I	CCWWGG	1 cut(s)	561
Bst2UI	CCWGG	2 cut(s)	67, 165
Bst6I	CTCTTC	2 cut(s)	98, 288
BstDEI	CTNAG	2 cut(s)	109, 244
BstDSI	CCRYGG	1 cut(s)	561
BstF5I	GGATG	3 cut(s)	97, 174, 252
BstKTI	GATC	2 cut(s)	198, 237
BstMAI	GTCTC	1 cut(s)	538
BstMBI	GATC	2 cut(s)	195, 234
BstMWI	GCNNNNNNNGC	1 cut(s)	439
BstNI	CCWGG	2 cut(s)	67, 165
BstSCI	CCNGG	2 cut(s)	65, 163
BstSFI	CTRYAG	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	171
Bsu15I	ATCGAT	1 cut(s)	267
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	267
BtgI	CCRYGG	1 cut(s)	561
BtgZI	GCGATG	2 cut(s)	414, 492
BtsCI	GGATG	3 cut(s)	97, 174, 252
BtsIMutI	CAGTG	1 cut(s)	234
CaiI	CAGNNNCTG	1 cut(s)	82
CciI	TCATGA	1 cut(s)	348
Cfr10I	RCCGGY	2 cut(s)	11, 310
ClaI	ATCGAT	1 cut(s)	267
CviAII	CATG	3 cut(s)	238, 349, 562
CviJI	RGCY	9 cut(s)	5, 71, 87, 108, 184, 212, 290, 310, 536
CviKI_1	RGCY	9 cut(s)	5, 71, 87, 108, 184, 212, 290, 310, 536
DdeI	CTNAG	2 cut(s)	109, 244
DpnI	GATC	2 cut(s)	197, 236
DpnII	GATC	2 cut(s)	195, 234
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	98, 288
EarI	CTCTTC	2 cut(s)	98, 288
Ecl136II	GAGCTC	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	561
Eco24I	GRGCYC	2 cut(s)	73, 110
Eco31I	GGTCTC	1 cut(s)	538
Eco53kI	GAGCTC	1 cut(s)	108
EcoICRI	GAGCTC	1 cut(s)	108
EcoRII	CCWGG	2 cut(s)	65, 163
EcoT14I	CCWWGG	1 cut(s)	561
EcoT38I	GRGCYC	2 cut(s)	73, 110
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	3 cut(s)	241, 352, 565
FaiI	YATR	7 cut(s)	128, 180, 239, 302, 350, 417, 563
FatI	CATG	3 cut(s)	237, 348, 561
FbaI	TGATCA	1 cut(s)	234
Fnu4HI	GCNGC	1 cut(s)	185
FokI	GGATG	3 cut(s)	104, 181, 239
FriOI	GRGCYC	2 cut(s)	73, 110
Fsp4HI	GCNGC	1 cut(s)	185
FspBI	CTAG	2 cut(s)	479, 549
GluI	GCNGC	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	12, 311
Hin1II	CATG	3 cut(s)	241, 352, 565
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	3 cut(s)	136, 203, 264
HpaII	CCGG	2 cut(s)	12, 311
HphI	GGTGA	5 cut(s)	26, 145, 244, 450, 489
Hpy166II	GTNNAC	2 cut(s)	331, 412
Hpy188I	TCNGA	4 cut(s)	40, 247, 325, 393
Hpy188III	TCNNGA	1 cut(s)	349
Hpy8I	GTNNAC	2 cut(s)	331, 412
HpyAV	CCTTC	3 cut(s)	124, 278, 379
HpyCH4V	TGCA	2 cut(s)	76, 556
HpyF10VI	GCNNNNNNNGC	1 cut(s)	439
HpyF3I	CTNAG	2 cut(s)	109, 244
Hsp92II	CATG	3 cut(s)	241, 352, 565
Ksp22I	TGATCA	1 cut(s)	234
Kzo9I	GATC	2 cut(s)	195, 234
LguI	GCTCTTC	1 cut(s)	98
LmnI	GCTCC	1 cut(s)	287
Lsp1109I	GCAGC	1 cut(s)	171
LweI	GCATC	1 cut(s)	491
MaeI	CTAG	2 cut(s)	479, 549
MaeIII	GTNAC	1 cut(s)	456
MalI	GATC	2 cut(s)	197, 236
MboI	GATC	2 cut(s)	195, 234
MboII	GAAGA	6 cut(s)	112, 115, 305, 394, 417, 495
MfeI	CAATTG	1 cut(s)	452
MhlI	GDGCHC	2 cut(s)	73, 110
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	42, 343, 421, 452
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	18, 94
MnlI	CCTC	6 cut(s)	10, 253, 266, 274, 350, 448
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	344
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	12, 311
MspR9I	CCNGG	2 cut(s)	67, 165
MunI	CAATTG	1 cut(s)	452
MvaI	CCWGG	2 cut(s)	67, 165
MwoI	GCNNNNNNNGC	1 cut(s)	439
NcoI	CCATGG	1 cut(s)	561
NdeII	GATC	2 cut(s)	195, 234
NlaIII	CATG	3 cut(s)	241, 352, 565
NlaIV	GGNNCC	2 cut(s)	64, 289
NmuCI	GTSAC	1 cut(s)	456
PagI	TCATGA	1 cut(s)	348
PciSI	GCTCTTC	1 cut(s)	98
PdmI	GAANNNNTTC	1 cut(s)	344
PfeI	GAWTC	3 cut(s)	136, 203, 264
PkrI	GCNGC	1 cut(s)	186
Psp124BI	GAGCTC	1 cut(s)	110
Psp6I	CCWGG	2 cut(s)	65, 163
PspGI	CCWGG	2 cut(s)	65, 163
PspN4I	GGNNCC	2 cut(s)	64, 289
PstI	CTGCAG	1 cut(s)	78
PstNI	CAGNNNCTG	1 cut(s)	82
SacI	GAGCTC	1 cut(s)	110
SapI	GCTCTTC	1 cut(s)	98
SatI	GCNGC	1 cut(s)	185
Sau3AI	GATC	2 cut(s)	195, 234
ScrFI	CCNGG	2 cut(s)	67, 165
SduI	GDGCHC	2 cut(s)	73, 110
SetI	ASST	8 cut(s)	21, 110, 135, 178, 186, 214, 390, 550
SfaNI	GCATC	1 cut(s)	491
SfcI	CTRYAG	1 cut(s)	74
SgrAI	CRCCGGYG	1 cut(s)	11
Sse9I	AATT	4 cut(s)	42, 343, 421, 452
SsiI	CCGC	3 cut(s)	9, 334, 401
SspMI	CTAG	2 cut(s)	479, 549
SstI	GAGCTC	1 cut(s)	110
StyD4I	CCNGG	2 cut(s)	65, 163
StyI	CCWWGG	1 cut(s)	561
TaqI	TCGA	2 cut(s)	262, 267
TasI	AATT	4 cut(s)	42, 343, 421, 452
TfiI	GAWTC	3 cut(s)	136, 203, 264
TscAI	CASTG	1 cut(s)	234
TseFI	GTSAC	1 cut(s)	456
TseI	GCWGC	1 cut(s)	184
Tsp45I	GTSAC	1 cut(s)	456
TspDTI	ATGAA	4 cut(s)	143, 337, 417, 495
TspRI	CASTG	1 cut(s)	234
XapI	RAATTY	1 cut(s)	343
XmnI	GAANNNNTTC	1 cut(s)	344
XspI	CTAG	2 cut(s)	479, 549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.