Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0012837

Physical Location & Seq

Genomic Coordinates Reverse (-)

66748176 .. 66750884

Gene Structure 2709 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005318

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCCACCGCCGGTGAGGTTTTAAGGCGAAATGTGCCGGAAAGTTTTGAGCTTTCTGAGAAGGAGCTTCATGTTCTTGCTGTGGATGATAGCATCATAGACAGGAAGGTCATTGAGAAGCTGCTTAAGATTTCTTGCTGTAAAGTGACTGCCGTTGAGAGTGGAACAAGGGCTCTGCAGTATCTGGGCTTGGATGGAGAGAAGAAGAGCTCAGTTGGTTTTGATGGTCTGAAGGTGAATCTAATAATAACAGACTACTCAATGCCTGGGATGACAGGATATGAGCTGCTAAAAAAGATCAAGGAATCATCAGCTTTTAGAGAAGTTCCAGTGGTGATCATGTCCTCAGAGAACATCCTCACTCGAATCGATAGATGTTTGGAGGAAGGAGCCGAAGAGTTTATAGTAAAGCCGGTAAAACTTTCAGATGTGAACCGCTTGAAAACTTTCATGATGGGCGGAGAAAGAAAAGAGAAAGGGGCGAAGAAGGTTCAGAAAAGACCGCTTCAAGTTGACTACAACAATTCTTCATCGACACCCTCGCCTTTACCACAACTGTCACCATCATTTGCTTGTAATCTAGCATCACTTCACTCATCACCATCTTCTTCACCATCATCTCCCCTAGCCAGATGTTCCTCAAAGAGACCTAGATTGCACAGCACAACAGTTCTGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATTTGTGGTCAGTCAACAGCTCTGTGGTTTGCCGAAGCCATGTGGCGGCATCTCACAGGCAAGTCTTTGTGATGGTGGGTCAGGGCTAGCTTGGAATTTTTCTTCATACTGCAATCAGAGTCTTAAACTTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010114 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:0098727 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

282

Amino Acids

30.67

Weight (kDa)

8.86

Isoelectric Point (pI)

55.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	25 - 143	3.3e-19	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48100 AT5G62920
fragaria_vesca	FvH4_5g16240
malus_domestica	MD06G1182400.v1.1 MD14G1188400.v1.1
prunus_persica	Prupe.5G180500_v2.0.a1 Prupe.5G180500_v2.0.a1
pyrus_communis	pycom06g16130 pycom14g15610
rosa_chinensis	RchiOBHm_Chr7g0179851
rosa_laevigata	RLG00000005318
rosa_roxburghii	Rroxscaffold_3G00273400
rosa_rugosa	Rorug06G0428800
rosa_samantha	Rh7AG028600 Rh7BG027800 Rh7CG029500 Rh7DG028900
rosa_wichuraiana	Rw7G002290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	107
AciI	CCGC	5 cut(s)	9, 436, 459, 503, 756
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	805
AcuI	CTGAAG	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	755
AflII	CTTAAG	1 cut(s)	125
AgsI	TTSAA	2 cut(s)	442, 509
AjnI	CCWGG	1 cut(s)	265
AluBI	AGCT	8 cut(s)	52, 67, 121, 210, 286, 314, 730, 800
AluI	AGCT	8 cut(s)	52, 67, 121, 210, 286, 314, 730, 800
Alw21I	GWGCWC	1 cut(s)	212
Alw26I	GTCTC	1 cut(s)	640
AlwNI	CAGNNNCTG	1 cut(s)	184
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	121, 286
ApoI	RAATTY	1 cut(s)	805
Asp700I	GAANNNNTTC	1 cut(s)	446
AsuHPI	GGTGA	6 cut(s)	26, 247, 346, 552, 591, 603
AsuNHI	GCTAGC	1 cut(s)	796
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	175, 212
Bbv12I	GWGCWC	1 cut(s)	212
BbvI	GCAGC	2 cut(s)	108, 273
BccI	CCATC	7 cut(s)	188, 218, 448, 571, 610, 622, 776
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	267
BclI	TGATCA	1 cut(s)	336
BcoDI	GTCTC	1 cut(s)	640
BfaI	CTAG	4 cut(s)	581, 626, 651, 797
BfmI	CTRYAG	1 cut(s)	176
BfrI	CTTAAG	1 cut(s)	125
BisI	GCNGC	3 cut(s)	122, 287, 757
BlsI	GCNGC	3 cut(s)	123, 288, 758
Bme1390I	CCNGG	1 cut(s)	267
BmiI	GGNNCC	1 cut(s)	391
BmrFI	CCNGG	1 cut(s)	267
BmsI	GCATC	3 cut(s)	102, 593, 768
BmtI	GCTAGC	1 cut(s)	800
Bsa29I	ATCGAT	1 cut(s)	369
BsaI	GGTCTC	1 cut(s)	640
BsaJI	CCNNGG	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	1 cut(s)	755
Bse118I	RCCGGY	2 cut(s)	11, 412
Bse1I	ACTGG	1 cut(s)	329
BseBI	CCWGG	1 cut(s)	267
BseCI	ATCGAT	1 cut(s)	369
BseDI	CCNNGG	1 cut(s)	266
BseGI	GGATG	4 cut(s)	91, 199, 276, 354
BseLI	CCNNNNNNNGG	1 cut(s)	755
BseMII	CTCAG	3 cut(s)	48, 225, 360
BseNI	ACTGG	1 cut(s)	329
BseXI	GCAGC	2 cut(s)	108, 273
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	369
BsiHKAI	GWGCWC	1 cut(s)	212
BsiSI	CCGG	3 cut(s)	12, 38, 413
BslI	CCNNNNNNNGG	1 cut(s)	755
BsmAI	GTCTC	1 cut(s)	640
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	640
Bsp1286I	GDGCHC	2 cut(s)	175, 212
Bsp143I	GATC	2 cut(s)	297, 336
BspACI	CCGC	5 cut(s)	9, 436, 459, 503, 756
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	49, 224, 359
BspDI	ATCGAT	1 cut(s)	369
BspHI	TCATGA	1 cut(s)	450
BspLI	GGNNCC	1 cut(s)	391
BspMAI	CTGCAG	1 cut(s)	180
BspOI	GCTAGC	1 cut(s)	800
BspQI	GCTCTTC	1 cut(s)	200
BspTI	CTTAAG	1 cut(s)	125
BspTNI	GGTCTC	1 cut(s)	640
BsrFI	RCCGGY	2 cut(s)	11, 412
BsrI	ACTGG	1 cut(s)	329
BssAI	RCCGGY	2 cut(s)	11, 412
BssECI	CCNNGG	1 cut(s)	266
BssMI	GATC	2 cut(s)	297, 336
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	2 cut(s)	558, 670
Bst6I	CTCTTC	2 cut(s)	200, 390
BstAFI	CTTAAG	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	798
BstDEI	CTNAG	3 cut(s)	57, 211, 346
BstF5I	GGATG	4 cut(s)	91, 199, 276, 354
BstKTI	GATC	2 cut(s)	300, 339
BstMAI	GTCTC	1 cut(s)	640
BstMBI	GATC	2 cut(s)	297, 336
BstMWI	GCNNNNNNNGC	1 cut(s)	34
BstNI	CCWGG	1 cut(s)	267
BstSCI	CCNGG	1 cut(s)	265
BstSFI	CTRYAG	1 cut(s)	176
BstV1I	GCAGC	2 cut(s)	108, 273
Bsu15I	ATCGAT	1 cut(s)	369
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	369
BtsCI	GGATG	4 cut(s)	91, 199, 276, 354
BtsIMutI	CAGTG	1 cut(s)	336
Cac8I	GCNNGC	1 cut(s)	798
CaiI	CAGNNNCTG	1 cut(s)	184
CciI	TCATGA	1 cut(s)	450
Cfr10I	RCCGGY	2 cut(s)	11, 412
ClaI	ATCGAT	1 cut(s)	369
CviAII	CATG	4 cut(s)	71, 340, 451, 750
DdeI	CTNAG	3 cut(s)	57, 211, 346
DpnI	GATC	2 cut(s)	299, 338
DpnII	GATC	2 cut(s)	297, 336
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	200, 390
EarI	CTCTTC	2 cut(s)	200, 390
EciI	GGCGGA	1 cut(s)	474
Ecl136II	GAGCTC	1 cut(s)	210
Eco24I	GRGCYC	2 cut(s)	175, 212
Eco31I	GGTCTC	1 cut(s)	640
Eco53kI	GAGCTC	1 cut(s)	210
Eco57I	CTGAAG	1 cut(s)	251
EcoICRI	GAGCTC	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	265
EcoT38I	GRGCYC	2 cut(s)	175, 212
FaeI	CATG	4 cut(s)	74, 343, 454, 753
FaiI	YATR	8 cut(s)	72, 98, 282, 341, 404, 452, 751, 817
FatI	CATG	4 cut(s)	70, 339, 450, 749
FbaI	TGATCA	1 cut(s)	336
Fnu4HI	GCNGC	3 cut(s)	122, 287, 757
FokI	GGATG	4 cut(s)	98, 206, 283, 341
FriOI	GRGCYC	2 cut(s)	175, 212
Fsp4HI	GCNGC	3 cut(s)	122, 287, 757
FspBI	CTAG	4 cut(s)	581, 626, 651, 797
GluI	GCNGC	3 cut(s)	122, 287, 757
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	12, 38, 413
Hin1II	CATG	4 cut(s)	74, 343, 454, 753
HincII	GTYRAC	2 cut(s)	514, 725
HindII	GTYRAC	2 cut(s)	514, 725
HinfI	GANTC	4 cut(s)	238, 305, 366, 829
HpaII	CCGG	3 cut(s)	12, 38, 413
HphI	GGTGA	6 cut(s)	26, 247, 346, 552, 591, 603
Hpy166II	GTNNAC	3 cut(s)	433, 514, 725
Hpy188I	TCNGA	6 cut(s)	58, 231, 349, 427, 495, 828
Hpy188III	TCNNGA	1 cut(s)	451
Hpy8I	GTNNAC	3 cut(s)	433, 514, 725
HpyAV	CCTTC	5 cut(s)	55, 100, 226, 380, 481
HpyCH4III	ACNGT	2 cut(s)	558, 670
HpyCH4V	TGCA	3 cut(s)	178, 658, 822
HpyF10VI	GCNNNNNNNGC	1 cut(s)	34
HpyF3I	CTNAG	3 cut(s)	57, 211, 346
Hsp92II	CATG	4 cut(s)	74, 343, 454, 753
Ksp22I	TGATCA	1 cut(s)	336
Kzo9I	GATC	2 cut(s)	297, 336
LguI	GCTCTTC	1 cut(s)	200
LmnI	GCTCC	2 cut(s)	64, 389
Lsp1109I	GCAGC	2 cut(s)	108, 273
LweI	GCATC	3 cut(s)	102, 593, 768
MaeI	CTAG	4 cut(s)	581, 626, 651, 797
MaeIII	GTNAC	2 cut(s)	145, 558
MalI	GATC	2 cut(s)	299, 338
MboI	GATC	2 cut(s)	297, 336
MhlI	GDGCHC	2 cut(s)	175, 212
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	523, 805
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	838
MnlI	CCTC	6 cut(s)	10, 355, 368, 376, 550, 649
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	446
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	23, 126, 834, 844
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	125
MspI	CCGG	3 cut(s)	12, 38, 413
MspR9I	CCNGG	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	267
MwoI	GCNNNNNNNGC	1 cut(s)	34
NdeII	GATC	2 cut(s)	297, 336
NheI	GCTAGC	1 cut(s)	796
NlaIII	CATG	4 cut(s)	74, 343, 454, 753
NlaIV	GGNNCC	1 cut(s)	391
NmuCI	GTSAC	2 cut(s)	145, 558
PagI	TCATGA	1 cut(s)	450
PciSI	GCTCTTC	1 cut(s)	200
PdmI	GAANNNNTTC	1 cut(s)	446
PfeI	GAWTC	3 cut(s)	238, 305, 366
PkrI	GCNGC	3 cut(s)	123, 288, 758
PleI	GAGTC	1 cut(s)	837
PpsI	GAGTC	1 cut(s)	837
Psp124BI	GAGCTC	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	265
PspN4I	GGNNCC	1 cut(s)	391
PstI	CTGCAG	1 cut(s)	180
PstNI	CAGNNNCTG	1 cut(s)	184
SacI	GAGCTC	1 cut(s)	212
SapI	GCTCTTC	1 cut(s)	200
SaqAI	TTAA	4 cut(s)	23, 126, 834, 844
SatI	GCNGC	3 cut(s)	122, 287, 757
Sau3AI	GATC	2 cut(s)	297, 336
SchI	GAGTC	1 cut(s)	838
ScrFI	CCNGG	1 cut(s)	267
SduI	GDGCHC	2 cut(s)	175, 212
SfaNI	GCATC	3 cut(s)	102, 593, 768
SfcI	CTRYAG	1 cut(s)	176
SgrAI	CRCCGGYG	1 cut(s)	11
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	2 cut(s)	523, 805
SsiI	CCGC	5 cut(s)	9, 436, 459, 503, 756
SspMI	CTAG	4 cut(s)	581, 626, 651, 797
SstI	GAGCTC	1 cut(s)	212
StyD4I	CCNGG	1 cut(s)	265
TaaI	ACNGT	2 cut(s)	558, 670
TaqI	TCGA	3 cut(s)	364, 369, 533
TasI	AATT	2 cut(s)	523, 805
TauI	GCSGC	1 cut(s)	759
TfiI	GAWTC	3 cut(s)	238, 305, 366
Tru1I	TTAA	4 cut(s)	23, 126, 834, 844
Tru9I	TTAA	4 cut(s)	23, 126, 834, 844
TscAI	CASTG	1 cut(s)	336
TseFI	GTSAC	2 cut(s)	145, 558
TseI	GCWGC	2 cut(s)	121, 286
Tsp45I	GTSAC	2 cut(s)	145, 558
TspDTI	ATGAA	4 cut(s)	59, 439, 519, 804
TspRI	CASTG	1 cut(s)	336
Vha464I	CTTAAG	1 cut(s)	125
XapI	RAATTY	1 cut(s)	805
XmnI	GAANNNNTTC	1 cut(s)	446
XspI	CTAG	4 cut(s)	581, 626, 651, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.