Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011244

Physical Location & Seq

Genomic Coordinates Forward (+)

17929581 .. 17931713

Gene Structure 2133 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G48420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCCACTGTGAAAATCTCTCTTTCCTTGGCTTCGCTATCACCATCTTCTTCTTCTTCTTCAATTCAATCTAAGTTATCACCATCTTTCATTCCCAATGCGGCACCTGCAAAGGCGGTGAAGTTGCGATTCAATGGAAAGTCCCTGAGAGCAAAACCAATGGTATACAGATCATCTCGCTCCGTTGGAGTCACCTGCTCTGCTTCATCTTCTCTGACGACTCTTCCCTCTGCTCTTCTCTTCGATTGCGATGGCGTTCTTGTTGATACCGAGAAGGACGGTCACAGGATCTCCTTCAACGACACTTTCAAAGAGAGAGATTTGAATGTTACGTGGGATGTTGATTTATACGGCGAGTTACTTAAAATCGGTGGTGGTAAAGAAAGGATGACTGCGTATTTTAACAAGGTTGGTTGGCCAGAGAAAGCTCCTAAAGATGAAGCAGAGAGGAAAGAGTTCATAGCTGGACTTCACAAGCAGAAGACTGAGCTTTTCATGGTTCTTATCGAGAAAAAGCTGCTTCCGCTTCGACCCGGTGTTGCAAAGTTGGTTGATCAAGCTTTAACAAACGGAGTCAAAGTAGCTGTGTGCAGTACTTCAAATGAGAAGGCGGTTTCTGCTATAGTTTCATGCTTGCTTGGACCAGAACGAGCAGAGAAAATCAAGATATTCGCAGGAGACGTAGTCCCCAAAAAGAAACCTGATCCAGCCATCTACAACTTAGCAGCTGAAACCCTTGGAGTTGATCCCTCAAAATGTGTAGTGGTTGAAGACAGCGCGATCGGGCTAGCAGCTGCAAAAGCTGCGGGAATGACTTGTATAGTTACAAAGAGTGGATACACGGCTGATGAAGATTTCGAGAACGCAGATGCGGTTTTCGACTGCATTGGAGACCCTCCAGAAGAGAGATTTGATTTGGCATTCTGTGGAAGTCTTCTCCGGAAACAGTTCGTTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

319

Amino Acids

34.25

Weight (kDa)

8.31

Isoelectric Point (pI)

32.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	78 - 270	1.2e-26	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	80 - 275	6.9e-17	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	233 - 293	1.9e-08	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48420
fragaria_vesca	FvH4_5g07070 FvH4_5g07070 FvH4_5g07070
malus_domestica	MD06G1160600.v1.1 MD14G1165800.v1.1
prunus_persica	Prupe.5G159700_v2.0.a1 Prupe.5G159800_v2.0.a1
pyrus_communis	pycom06g14360 pycom14g13840
rosa_chinensis	RchiOBHm_Chr7g0191481
rosa_laevigata	RLG00000004445
rosa_multiflora	Rmu_sc0002661.1_g000011
rosa_roxburghii	Rroxscaffold_157G00438420 Rroxscaffold_3G00263760
rosa_rugosa	Rorug06G0510500
rosa_samantha	Rh7AG118700 Rh7BG120700 Rh7CG123500 Rh7DG121600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	115, 203
Acc36I	ACCTGC	2 cut(s)	115, 203
AccB1I	GGYRCC	1 cut(s)	103
AccI	GTMKAC	1 cut(s)	165
AccII	CGCG	1 cut(s)	779
AccIII	TCCGGA	1 cut(s)	939
AciI	CCGC	6 cut(s)	101, 116, 524, 611, 806, 872
AclWI	GGATC	3 cut(s)	296, 698, 740
AcoI	YGGCCR	2 cut(s)	3, 416
AfaI	GTAC	1 cut(s)	595
AgsI	TTSAA	8 cut(s)	63, 68, 133, 298, 310, 325, 600, 770
AluBI	AGCT	9 cut(s)	428, 464, 490, 517, 560, 584, 728, 794, 803
AluI	AGCT	9 cut(s)	428, 464, 490, 517, 560, 584, 728, 794, 803
Alw26I	GTCTC	2 cut(s)	672, 885
AlwI	GGATC	3 cut(s)	296, 698, 740
Aor13HI	TCCGGA	1 cut(s)	939
AoxI	GGCC	2 cut(s)	3, 416
ApeKI	GCWGC	5 cut(s)	517, 725, 791, 794, 803
Asp700I	GAANNNNTTC	2 cut(s)	455, 947
AspLEI	GCGC	1 cut(s)	779
AspS9I	GGNCC	1 cut(s)	641
AsuC2I	CCSGG	1 cut(s)	534
AsuHPI	GGTGA	4 cut(s)	33, 72, 130, 184
AsuNHI	GCTAGC	1 cut(s)	787
AvaII	GGWCC	1 cut(s)	641
BalI	TGGCCA	2 cut(s)	5, 418
BanI	GGYRCC	1 cut(s)	103
BbsI	GAAGAC	3 cut(s)	488, 777, 926
BbvI	GCAGC	5 cut(s)	504, 737, 781, 790, 803
BccI	CCATC	4 cut(s)	52, 91, 245, 719
BceAI	ACGGC	2 cut(s)	367, 858
BciVI	GTATCC	1 cut(s)	830
BclI	TGATCA	1 cut(s)	553
BcnI	CCSGG	1 cut(s)	534
BcoDI	GTCTC	2 cut(s)	672, 885
BfaI	CTAG	1 cut(s)	788
BfmI	CTRYAG	1 cut(s)	621
BfuAI	ACCTGC	2 cut(s)	115, 203
BfuI	GTATCC	1 cut(s)	830
BisI	GCNGC	6 cut(s)	102, 518, 726, 792, 795, 804
BlsI	GCNGC	6 cut(s)	103, 519, 727, 793, 796, 805
BmcAI	AGTACT	1 cut(s)	595
Bme1390I	CCNGG	1 cut(s)	534
Bme18I	GGWCC	1 cut(s)	641
BmgT120I	GGNCC	1 cut(s)	641
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	534
BmsI	GCATC	1 cut(s)	859
BmtI	GCTAGC	1 cut(s)	791
BpiI	GAAGAC	3 cut(s)	488, 777, 926
BpmI	CTGGAG	1 cut(s)	882
BpuMI	CCSGG	1 cut(s)	534
BsaAI	YACGTR	1 cut(s)	333
BsaI	GGTCTC	1 cut(s)	885
BsaJI	CCNNGG	2 cut(s)	27, 736
BsaWI	WCCGGW	1 cut(s)	939
BsaXI	ACNNNNNCTCC	6 cut(s)	275, 305, 564, 594, 669, 699
BseAI	TCCGGA	1 cut(s)	939
BseDI	CCNNGG	2 cut(s)	27, 736
BseGI	GGATG	2 cut(s)	343, 393
BseMII	CTCAG	2 cut(s)	137, 477
BseXI	GCAGC	5 cut(s)	504, 737, 781, 790, 803
BsgI	GTGCAG	1 cut(s)	610
Bsh1236I	CGCG	1 cut(s)	779
Bsh1285I	CGRYCG	1 cut(s)	783
BshFI	GGCC	2 cut(s)	5, 418
BshNI	GGYRCC	1 cut(s)	103
BsiEI	CGRYCG	1 cut(s)	783
BsiSI	CCGG	2 cut(s)	534, 940
BslFI	GGGAC	2 cut(s)	127, 671
BsmAI	GTCTC	2 cut(s)	672, 885
BsmBI	CGTCTC	1 cut(s)	672
BsmFI	GGGAC	2 cut(s)	127, 671
BsmI	GAATGC	1 cut(s)	920
BsnI	GGCC	2 cut(s)	5, 418
Bso31I	GGTCTC	1 cut(s)	885
Bsp13I	TCCGGA	1 cut(s)	939
Bsp143I	GATC	6 cut(s)	170, 288, 553, 703, 745, 780
BspACI	CCGC	6 cut(s)	101, 116, 524, 611, 806, 872
BspANI	GGCC	2 cut(s)	5, 418
BspCNI	CTCAG	2 cut(s)	138, 478
BspEI	TCCGGA	1 cut(s)	939
BspFNI	CGCG	1 cut(s)	779
BspLI	GGNNCC	1 cut(s)	105
BspMI	ACCTGC	2 cut(s)	115, 203
BspOI	GCTAGC	1 cut(s)	791
BspPI	GGATC	3 cut(s)	296, 698, 740
BspQI	GCTCTTC	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	103
BspTNI	GGTCTC	1 cut(s)	885
BssECI	CCNNGG	2 cut(s)	27, 736
BssMI	GATC	6 cut(s)	170, 288, 553, 703, 745, 780
BssNAI	GTATAC	1 cut(s)	166
BssT1I	CCWWGG	2 cut(s)	27, 736
Bst1107I	GTATAC	1 cut(s)	166
Bst4CI	ACNGT	3 cut(s)	10, 281, 948
Bst6I	CTCTTC	4 cut(s)	228, 240, 245, 897
BstAPI	GCANNNNNTGC	1 cut(s)	803
BstBAI	YACGTR	1 cut(s)	333
BstC8I	GCNNGC	2 cut(s)	635, 789
BstDEI	CTNAG	4 cut(s)	72, 146, 486, 721
BstF5I	GGATG	2 cut(s)	343, 393
BstFNI	CGCG	1 cut(s)	779
BstHHI	GCGC	1 cut(s)	779
BstKTI	GATC	6 cut(s)	173, 291, 556, 706, 748, 783
BstMAI	GTCTC	2 cut(s)	672, 885
BstMBI	GATC	6 cut(s)	170, 288, 553, 703, 745, 780
BstMCI	CGRYCG	1 cut(s)	783
BstMWI	GCNNNNNNNGC	5 cut(s)	107, 523, 617, 800, 803
BstSCI	CCNGG	1 cut(s)	532
BstSFI	CTRYAG	1 cut(s)	621
BstUI	CGCG	1 cut(s)	779
BstV1I	GCAGC	5 cut(s)	504, 737, 781, 790, 803
BstV2I	GAAGAC	3 cut(s)	488, 777, 926
BstX2I	RGATCY	1 cut(s)	288
BstYI	RGATCY	1 cut(s)	288
BstZ17I	GTATAC	1 cut(s)	166
BsuI	GTATCC	1 cut(s)	830
BsuRI	GGCC	2 cut(s)	5, 418
BtgZI	GCGATG	1 cut(s)	264
BtsCI	GGATG	2 cut(s)	343, 393
BtsIMutI	CAGTG	1 cut(s)	6
BveI	ACCTGC	2 cut(s)	115, 203
Cac8I	GCNNGC	2 cut(s)	635, 789
CfoI	GCGC	1 cut(s)	779
Cfr13I	GGNCC	1 cut(s)	641
Csp6I	GTAC	1 cut(s)	594
CviAII	CATG	2 cut(s)	496, 630
CviQI	GTAC	1 cut(s)	594
DdeI	CTNAG	4 cut(s)	72, 146, 486, 721
DpnI	GATC	6 cut(s)	172, 290, 555, 705, 747, 782
DpnII	GATC	6 cut(s)	170, 288, 553, 703, 745, 780
EaeI	YGGCCR	2 cut(s)	3, 416
Eam1104I	CTCTTC	4 cut(s)	228, 240, 245, 897
EarI	CTCTTC	4 cut(s)	228, 240, 245, 897
Eco130I	CCWWGG	2 cut(s)	27, 736
Eco31I	GGTCTC	1 cut(s)	885
Eco47I	GGWCC	1 cut(s)	641
EcoT14I	CCWWGG	2 cut(s)	27, 736
ErhI	CCWWGG	2 cut(s)	27, 736
Esp3I	CGTCTC	1 cut(s)	672
FaeI	CATG	2 cut(s)	499, 633
FaiI	YATR	7 cut(s)	166, 349, 461, 497, 623, 631, 821
FaqI	GGGAC	2 cut(s)	127, 671
FatI	CATG	2 cut(s)	495, 629
FauI	CCCGC	1 cut(s)	799
FbaI	TGATCA	1 cut(s)	553
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	6 cut(s)	102, 518, 726, 792, 795, 804
FokI	GGATG	2 cut(s)	350, 400
Fsp4HI	GCNGC	6 cut(s)	102, 518, 726, 792, 795, 804
FspBI	CTAG	1 cut(s)	788
GlaI	GCGC	1 cut(s)	778
GluI	GCNGC	6 cut(s)	102, 518, 726, 792, 795, 804
GsuI	CTGGAG	1 cut(s)	882
HaeIII	GGCC	2 cut(s)	5, 418
HapII	CCGG	2 cut(s)	534, 940
HhaI	GCGC	1 cut(s)	779
Hin1II	CATG	2 cut(s)	499, 633
Hin6I	GCGC	1 cut(s)	777
HinP1I	GCGC	1 cut(s)	777
HindIII	AAGCTT	1 cut(s)	558
HinfI	GANTC	4 cut(s)	129, 189, 220, 573
HpaII	CCGG	2 cut(s)	534, 940
HphI	GGTGA	4 cut(s)	33, 72, 130, 184
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	5 cut(s)	508, 664, 859, 899, 940
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	3 cut(s)	268, 304, 601
HpyCH4III	ACNGT	3 cut(s)	10, 281, 948
HpyCH4IV	ACGT	2 cut(s)	332, 681
HpyCH4V	TGCA	5 cut(s)	110, 542, 591, 797, 885
HpyF10VI	GCNNNNNNNGC	5 cut(s)	107, 523, 617, 800, 803
HpyF3I	CTNAG	4 cut(s)	72, 146, 486, 721
HpySE526I	ACGT	2 cut(s)	332, 681
Hsp92II	CATG	2 cut(s)	499, 633
HspAI	GCGC	1 cut(s)	777
Kpn2I	TCCGGA	1 cut(s)	939
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	6 cut(s)	170, 288, 553, 703, 745, 780
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	2 cut(s)	185, 433
Lsp1109I	GCAGC	5 cut(s)	504, 737, 781, 790, 803
LweI	GCATC	1 cut(s)	859
MaeI	CTAG	1 cut(s)	788
MaeII	ACGT	2 cut(s)	332, 681
MaeIII	GTNAC	5 cut(s)	190, 281, 328, 357, 823
MalI	GATC	6 cut(s)	172, 290, 555, 705, 747, 782
MboI	GATC	6 cut(s)	170, 288, 553, 703, 745, 780
MflI	RGATCY	1 cut(s)	288
MlsI	TGGCCA	2 cut(s)	5, 418
MluCI	AATT	1 cut(s)	63
MluNI	TGGCCA	2 cut(s)	5, 418
MlyI	GAGTC	3 cut(s)	198, 214, 582
MmeI	TCCRAC	1 cut(s)	166
MnlI	CCTC	4 cut(s)	238, 441, 760, 906
Mox20I	TGGCCA	2 cut(s)	5, 418
MroI	TCCGGA	1 cut(s)	939
MroXI	GAANNNNTTC	2 cut(s)	455, 947
MscI	TGGCCA	2 cut(s)	5, 418
MseI	TTAA	4 cut(s)	363, 402, 563, 958
Msp20I	TGGCCA	2 cut(s)	5, 418
MspA1I	CMGCKG	2 cut(s)	728, 794
MspI	CCGG	2 cut(s)	534, 940
MspR9I	CCNGG	1 cut(s)	534
Mva1269I	GAATGC	1 cut(s)	920
MvnI	CGCG	1 cut(s)	779
MwoI	GCNNNNNNNGC	5 cut(s)	107, 523, 617, 800, 803
NciI	CCSGG	1 cut(s)	534
NdeII	GATC	6 cut(s)	170, 288, 553, 703, 745, 780
NheI	GCTAGC	1 cut(s)	787
NlaIII	CATG	2 cut(s)	499, 633
NlaIV	GGNNCC	1 cut(s)	105
NmuCI	GTSAC	2 cut(s)	190, 281
PaqCI	CACCTGC	2 cut(s)	115, 203
PciSI	GCTCTTC	1 cut(s)	240
PcsI	WCGNNNNNNNCGW	1 cut(s)	678
PctI	GAATGC	1 cut(s)	920
PdmI	GAANNNNTTC	2 cut(s)	455, 947
PfeI	GAWTC	1 cut(s)	129
PflFI	GACNNNGTC	1 cut(s)	683
PkrI	GCNGC	6 cut(s)	103, 519, 727, 793, 796, 805
Ple19I	CGATCG	1 cut(s)	783
PleI	GAGTC	3 cut(s)	197, 214, 581
PpsI	GAGTC	3 cut(s)	197, 214, 581
Ppu21I	YACGTR	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	641
PsuI	RGATCY	1 cut(s)	288
PsyI	GACNNNGTC	1 cut(s)	683
PvuI	CGATCG	1 cut(s)	783
PvuII	CAGCTG	2 cut(s)	728, 794
RsaI	GTAC	1 cut(s)	595
RsaNI	GTAC	1 cut(s)	594
SapI	GCTCTTC	1 cut(s)	240
SaqAI	TTAA	4 cut(s)	363, 402, 563, 958
SatI	GCNGC	6 cut(s)	102, 518, 726, 792, 795, 804
Sau3AI	GATC	6 cut(s)	170, 288, 553, 703, 745, 780
Sau96I	GGNCC	1 cut(s)	641
ScaI	AGTACT	1 cut(s)	595
SchI	GAGTC	3 cut(s)	198, 214, 582
ScrFI	CCNGG	1 cut(s)	534
SfaNI	GCATC	1 cut(s)	859
SfcI	CTRYAG	1 cut(s)	621
SinI	GGWCC	1 cut(s)	641
Sse9I	AATT	1 cut(s)	63
SsiI	CCGC	6 cut(s)	101, 116, 524, 611, 806, 872
SspMI	CTAG	1 cut(s)	788
StyD4I	CCNGG	1 cut(s)	532
StyI	CCWWGG	2 cut(s)	27, 736
TaaI	ACNGT	3 cut(s)	10, 281, 948
TaiI	ACGT	2 cut(s)	335, 684
TaqI	TCGA	5 cut(s)	243, 507, 529, 858, 879
TasI	AATT	1 cut(s)	63
TatI	WGTACW	1 cut(s)	593
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	1 cut(s)	129
Tru1I	TTAA	4 cut(s)	363, 402, 563, 958
Tru9I	TTAA	4 cut(s)	363, 402, 563, 958
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	2 cut(s)	190, 281
TseI	GCWGC	5 cut(s)	517, 725, 791, 794, 803
Tsp45I	GTSAC	2 cut(s)	190, 281
TspDTI	ATGAA	7 cut(s)	79, 195, 448, 453, 484, 618, 864
TspGWI	ACGGA	2 cut(s)	172, 585
TspRI	CASTG	1 cut(s)	13
Tth111I	GACNNNGTC	1 cut(s)	683
VpaK11BI	GGWCC	1 cut(s)	641
XmiI	GTMKAC	1 cut(s)	165
XmnI	GAANNNNTTC	2 cut(s)	455, 947
XspI	CTAG	1 cut(s)	788
ZrmI	AGTACT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.