Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0011244

Physical Location & Seq

Genomic Coordinates Reverse (-)

19124534 .. 19127021

Gene Structure 2488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g14360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCGTCCTGTCATACCTTAGCTACATTATCTTTTATAAACCCGTTGCCATCTCACAAAAACACAACCCCCATTGCCAACCTCAAATCCCAAGAAAGGACCTTACAATCTTCACTGGTGGGCACAGCAATAATAATTGGCAAAACAATGAGCAGCAAGATTGGAACAACATCTAGCTCTGCTTCTGCTTCTTCTACTCTTCCTTCTGCTCTTCTCTTCGATTGCGATGGTGTGCTTGTCGACACGGAGAAGGACGGTCACCGGATTTCTTTCAACAACACTTTCAAAGAGAAAGAATTGGGTGTTACTTGGGATGTCGATTTATTCGGCGAATTGCTCAAGATTGCAGGTGGAAAAGAAAGAATGACAACCTATTTTAACAACACGGGTTGGCCGGAAAATGCTCCGAAGAGTGAAGAAGAAAGAAAAGCATTCGTAGTTTCACTTCACAAGCGAAAGACAGAGTTGTTCTTGGCCCTTATTGAGAAAAAGTCACTGCCGCTTCGGCCAGGGGTTGCAAAGCTGATAGATGAGGCTTTAGCAGAAGGAGTTAAAGTTGCTGTCTGCAGCGCCTCCAATGAGAAGGCGGTTTCTGCAATAGTTTCAATCTTGCTGGGACCAGAACGGGCAGAAAAAATCAAGATATTTGCTGGAGAAGTGGTTCCTCGCAAGAAGCCTGATCCCGCTATCTATTTATTGGCTGCTAACACTCTCGGCGTTGATCCTTCAAGTTGTGTAGTAATTGAGGACAGTGCTATAGGCCTTGCAGCTGCTAAAGCTGCTGGAATGAAGTGTGTCATAACCAAGAGCGGATACACAGTTGATGAAGATTTTCAGAAGGCAGATGCAGTTTTTGACGTCATCGGAGATCCTCCAGAGGAGCGATTTGACTTGGCATTCTGCAGAAGCCTTCTCAAGCAATCTGTGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

311

Amino Acids

33.31

Weight (kDa)

6.47

Isoelectric Point (pI)

38.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	70 - 262	9.7e-26	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	72 - 266	1.8e-16	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	224 - 285	2.9e-08	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48420
fragaria_vesca	FvH4_5g07070 FvH4_5g07070 FvH4_5g07070
malus_domestica	MD06G1160600.v1.1 MD14G1165800.v1.1
prunus_persica	Prupe.5G159700_v2.0.a1 Prupe.5G159800_v2.0.a1
pyrus_communis	pycom06g14360 pycom14g13840
rosa_chinensis	RchiOBHm_Chr7g0191481
rosa_laevigata	RLG00000004445
rosa_multiflora	Rmu_sc0002661.1_g000011
rosa_roxburghii	Rroxscaffold_157G00438420 Rroxscaffold_3G00263760
rosa_rugosa	Rorug06G0510500
rosa_samantha	Rh7AG118700 Rh7BG120700 Rh7CG123500 Rh7DG121600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	38
AarI	CACCTGC	1 cut(s)	338
AatII	GACGTC	1 cut(s)	861
Acc36I	ACCTGC	1 cut(s)	338
AccBSI	CCGCTC	1 cut(s)	810
AccI	GTMKAC	1 cut(s)	240
AciI	CCGC	4 cut(s)	500, 587, 684, 810
AclWI	GGATC	3 cut(s)	674, 716, 863
AcoI	YGGCCR	2 cut(s)	392, 506
AcyI	GRCGYC	2 cut(s)	5, 858
AfaI	GTAC	1 cut(s)	929
AfiI	CCNNNNNNNGG	1 cut(s)	96
AgsI	TTSAA	4 cut(s)	274, 286, 606, 729
AjnI	CCWGG	1 cut(s)	508
AloI	GAACNNNNNNTCC	2 cut(s)	645, 677
AluBI	AGCT	5 cut(s)	23, 177, 523, 770, 779
AluI	AGCT	5 cut(s)	23, 177, 523, 770, 779
AlwI	GGATC	3 cut(s)	674, 716, 863
AoxI	GGCC	4 cut(s)	392, 474, 506, 760
ApeKI	GCWGC	6 cut(s)	153, 567, 701, 767, 770, 779
Asp700I	GAANNNNTTC	2 cut(s)	660, 831
AspLEI	GCGC	1 cut(s)	572
AspS9I	GGNCC	3 cut(s)	99, 475, 617
AsuHPI	GGTGA	1 cut(s)	251
AvaII	GGWCC	2 cut(s)	99, 617
BaeGI	GKGCMC	1 cut(s)	125
BarI	GAAGNNNNNNTAC	2 cut(s)	429, 461
BbvI	GCAGC	6 cut(s)	165, 579, 688, 757, 766, 779
BccI	CCATC	2 cut(s)	58, 221
BciT130I	CCWGG	1 cut(s)	510
BciVI	GTATCC	1 cut(s)	806
BfaI	CTAG	2 cut(s)	174, 931
BfmI	CTRYAG	3 cut(s)	565, 756, 901
BfoI	RGCGCY	1 cut(s)	573
BfuAI	ACCTGC	1 cut(s)	338
BfuI	GTATCC	1 cut(s)	806
BglI	GCCNNNNNGGC	1 cut(s)	505
BisI	GCNGC	7 cut(s)	154, 500, 568, 702, 768, 771, 780
BlsI	GCNGC	7 cut(s)	155, 501, 569, 703, 769, 772, 781
Bme1390I	CCNGG	1 cut(s)	510
Bme18I	GGWCC	2 cut(s)	99, 617
BmgT120I	GGNCC	3 cut(s)	99, 475, 617
BmiI	GGNNCC	2 cut(s)	618, 663
BmrFI	CCNGG	1 cut(s)	510
BmsI	GCATC	1 cut(s)	835
BpmI	CTGGAG	2 cut(s)	672, 858
Bpu10I	CCTNAGC	1 cut(s)	19
BpuEI	CTTGAG	2 cut(s)	323, 899
BsaHI	GRCGYC	2 cut(s)	5, 858
BsaJI	CCNNGG	1 cut(s)	509
BsaWI	WCCGGW	1 cut(s)	261
BsaXI	ACNNNNNCTCC	4 cut(s)	540, 570, 645, 675
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse1I	ACTGG	1 cut(s)	120
Bse3DI	GCAATG	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	1 cut(s)	509
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMI	GCAATG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	120
BseRI	GAGGAG	1 cut(s)	893
BseSI	GKGCMC	1 cut(s)	125
BseXI	GCAGC	6 cut(s)	165, 579, 688, 757, 766, 779
BseYI	CCCAGC	1 cut(s)	613
BshFI	GGCC	4 cut(s)	394, 476, 508, 762
BsiSI	CCGG	2 cut(s)	262, 395
BslFI	GGGAC	1 cut(s)	630
BslI	CCNNNNNNNGG	1 cut(s)	96
BsmFI	GGGAC	1 cut(s)	630
BsmI	GAATGC	2 cut(s)	431, 896
BsnI	GGCC	4 cut(s)	394, 476, 508, 762
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	3 cut(s)	679, 721, 868
BspACI	CCGC	4 cut(s)	500, 587, 684, 810
BspANI	GGCC	4 cut(s)	394, 476, 508, 762
BspLI	GGNNCC	2 cut(s)	618, 663
BspMAI	CTGCAG	2 cut(s)	569, 905
BspMI	ACCTGC	1 cut(s)	338
BspPI	GGATC	3 cut(s)	674, 716, 863
BspQI	GCTCTTC	1 cut(s)	216
BsrBI	CCGCTC	1 cut(s)	810
BsrDI	GCAATG	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	509
BssMI	GATC	3 cut(s)	679, 721, 868
BssNI	GRCGYC	2 cut(s)	5, 858
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	3 cut(s)	257, 752, 820
Bst6I	CTCTTC	4 cut(s)	204, 216, 221, 404
BstACI	GRCGYC	2 cut(s)	5, 858
BstDEI	CTNAG	1 cut(s)	19
BstEII	GGTNACC	1 cut(s)	257
BstF5I	GGATG	1 cut(s)	319
BstH2I	RGCGCY	1 cut(s)	573
BstHHI	GCGC	1 cut(s)	572
BstKTI	GATC	3 cut(s)	682, 724, 871
BstMBI	GATC	3 cut(s)	679, 721, 868
BstMWI	GCNNNNNNNGC	4 cut(s)	505, 593, 776, 779
BstNI	CCWGG	1 cut(s)	510
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	508
BstSFI	CTRYAG	3 cut(s)	565, 756, 901
BstSLI	GKGCMC	1 cut(s)	125
BstV1I	GCAGC	6 cut(s)	165, 579, 688, 757, 766, 779
BstX2I	RGATCY	1 cut(s)	868
BstYI	RGATCY	1 cut(s)	868
BsuI	GTATCC	1 cut(s)	806
BsuRI	GGCC	4 cut(s)	394, 476, 508, 762
BtgZI	GCGATG	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	319
BtsI	GCAGTG	1 cut(s)	494
BtsIMutI	CAGTG	3 cut(s)	113, 494, 757
BveI	ACCTGC	1 cut(s)	338
CfoI	GCGC	1 cut(s)	572
Cfr13I	GGNCC	3 cut(s)	99, 475, 617
Csp6I	GTAC	1 cut(s)	928
CviQI	GTAC	1 cut(s)	928
DdeI	CTNAG	1 cut(s)	19
DpnI	GATC	3 cut(s)	681, 723, 870
DpnII	GATC	3 cut(s)	679, 721, 868
EaeI	YGGCCR	2 cut(s)	392, 506
Eam1104I	CTCTTC	4 cut(s)	204, 216, 221, 404
EarI	CTCTTC	4 cut(s)	204, 216, 221, 404
Eco147I	AGGCCT	1 cut(s)	762
Eco47I	GGWCC	2 cut(s)	99, 617
Eco91I	GGTNACC	1 cut(s)	257
EcoO109I	RGGNCCY	1 cut(s)	99
EcoO65I	GGTNACC	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	508
FaiI	YATR	4 cut(s)	15, 38, 758, 800
FaqI	GGGAC	1 cut(s)	630
FauI	CCCGC	1 cut(s)	691
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	7 cut(s)	154, 500, 568, 702, 768, 771, 780
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	7 cut(s)	154, 500, 568, 702, 768, 771, 780
FspBI	CTAG	2 cut(s)	174, 931
GlaI	GCGC	1 cut(s)	571
GluI	GCNGC	7 cut(s)	154, 500, 568, 702, 768, 771, 780
GsaI	CCCAGC	1 cut(s)	617
GsuI	CTGGAG	2 cut(s)	672, 858
HaeII	RGCGCY	1 cut(s)	573
HaeIII	GGCC	4 cut(s)	394, 476, 508, 762
HapII	CCGG	2 cut(s)	262, 395
HhaI	GCGC	1 cut(s)	572
Hin1I	GRCGYC	2 cut(s)	5, 858
Hin6I	GCGC	1 cut(s)	570
HinP1I	GCGC	1 cut(s)	570
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HpaII	CCGG	2 cut(s)	262, 395
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	2 cut(s)	241, 928
Hpy188I	TCNGA	3 cut(s)	408, 837, 866
Hpy188III	TCNNGA	3 cut(s)	340, 640, 875
Hpy8I	GTNNAC	2 cut(s)	241, 928
HpyAV	CCTTC	7 cut(s)	213, 244, 539, 577, 735, 832, 920
HpyCH4III	ACNGT	3 cut(s)	257, 752, 820
HpyCH4IV	ACGT	1 cut(s)	858
HpyCH4V	TGCA	7 cut(s)	347, 518, 567, 596, 767, 848, 903
HpyF10VI	GCNNNNNNNGC	4 cut(s)	505, 593, 776, 779
HpyF3I	CTNAG	1 cut(s)	19
HpySE526I	ACGT	1 cut(s)	858
Hsp92I	GRCGYC	2 cut(s)	5, 858
HspAI	GCGC	1 cut(s)	570
Kzo9I	GATC	3 cut(s)	679, 721, 868
LguI	GCTCTTC	1 cut(s)	216
LmnI	GCTCC	2 cut(s)	409, 880
Lsp1109I	GCAGC	6 cut(s)	165, 579, 688, 757, 766, 779
LweI	GCATC	1 cut(s)	835
MaeI	CTAG	2 cut(s)	174, 931
MaeII	ACGT	1 cut(s)	858
MaeIII	GTNAC	3 cut(s)	257, 304, 492
MalI	GATC	3 cut(s)	681, 723, 870
MbiI	CCGCTC	1 cut(s)	810
MboI	GATC	3 cut(s)	679, 721, 868
MboII	GAAGA	9 cut(s)	102, 183, 191, 203, 208, 421, 428, 431, 839
MflI	RGATCY	1 cut(s)	868
MhlI	GDGCHC	1 cut(s)	125
MluCI	AATT	4 cut(s)	135, 296, 332, 741
MnlI	CCTC	7 cut(s)	92, 526, 583, 675, 739, 871, 882
MroXI	GAANNNNTTC	2 cut(s)	660, 831
MseI	TTAA	2 cut(s)	378, 552
MspA1I	CMGCKG	1 cut(s)	770
MspI	CCGG	2 cut(s)	262, 395
MspR9I	CCNGG	1 cut(s)	510
Mva1269I	GAATGC	2 cut(s)	431, 896
MvaI	CCWGG	1 cut(s)	510
MwoI	GCNNNNNNNGC	4 cut(s)	505, 593, 776, 779
NdeII	GATC	3 cut(s)	679, 721, 868
NlaIV	GGNNCC	2 cut(s)	618, 663
NmeAIII	GCCGAG	1 cut(s)	693
NmuCI	GTSAC	2 cut(s)	257, 492
PaqCI	CACCTGC	1 cut(s)	338
PceI	AGGCCT	1 cut(s)	762
PciSI	GCTCTTC	1 cut(s)	216
PctI	GAATGC	2 cut(s)	431, 896
PdmI	GAANNNNTTC	2 cut(s)	660, 831
PkrI	GCNGC	7 cut(s)	155, 501, 569, 703, 769, 772, 781
PpuMI	RGGWCCY	1 cut(s)	99
PsiI	TTATAA	1 cut(s)	38
Psp5II	RGGWCCY	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	508
PspEI	GGTNACC	1 cut(s)	257
PspFI	CCCAGC	1 cut(s)	613
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	2 cut(s)	618, 663
PspPI	GGNCC	3 cut(s)	99, 475, 617
PspPPI	RGGWCCY	1 cut(s)	99
PstI	CTGCAG	2 cut(s)	569, 905
PsuI	RGATCY	1 cut(s)	868
PvuII	CAGCTG	1 cut(s)	770
RsaI	GTAC	1 cut(s)	929
RsaNI	GTAC	1 cut(s)	928
SalI	GTCGAC	1 cut(s)	239
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	378, 552
SatI	GCNGC	7 cut(s)	154, 500, 568, 702, 768, 771, 780
Sau3AI	GATC	3 cut(s)	679, 721, 868
Sau96I	GGNCC	3 cut(s)	99, 475, 617
ScrFI	CCNGG	1 cut(s)	510
SduI	GDGCHC	1 cut(s)	125
SfaNI	GCATC	1 cut(s)	835
SfcI	CTRYAG	3 cut(s)	565, 756, 901
SinI	GGWCC	2 cut(s)	99, 617
SmlI	CTYRAG	2 cut(s)	338, 914
SmoI	CTYRAG	2 cut(s)	338, 914
Sse9I	AATT	4 cut(s)	135, 296, 332, 741
SseBI	AGGCCT	1 cut(s)	762
SsiI	CCGC	4 cut(s)	500, 587, 684, 810
SspMI	CTAG	2 cut(s)	174, 931
StuI	AGGCCT	1 cut(s)	762
StyD4I	CCNGG	1 cut(s)	508
TaaI	ACNGT	3 cut(s)	257, 752, 820
TaiI	ACGT	1 cut(s)	861
TaqI	TCGA	3 cut(s)	219, 240, 318
TasI	AATT	4 cut(s)	135, 296, 332, 741
TatI	WGTACW	1 cut(s)	927
TauI	GCSGC	1 cut(s)	502
Tru1I	TTAA	2 cut(s)	378, 552
Tru9I	TTAA	2 cut(s)	378, 552
TscAI	CASTG	3 cut(s)	120, 501, 757
TseFI	GTSAC	2 cut(s)	257, 492
TseI	GCWGC	6 cut(s)	153, 567, 701, 767, 770, 779
Tsp45I	GTSAC	2 cut(s)	257, 492
TspDTI	ATGAA	2 cut(s)	803, 840
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	3 cut(s)	120, 501, 757
VpaK11BI	GGWCC	2 cut(s)	99, 617
XmiI	GTMKAC	1 cut(s)	240
XmnI	GAANNNNTTC	2 cut(s)	660, 831
XspI	CTAG	2 cut(s)	174, 931
ZraI	GACGTC	1 cut(s)	859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.