Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002661.1

Orthogroup ID

OG0011244

Physical Location & Seq

Genomic Coordinates Forward (+)

96656 .. 102678

Gene Structure 6023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002661.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

atggccttcggtctttccttagctacattatcttctaccaaccctttacaatctcacaaaaagaccacctccatttccaacctcaaatcccatcaaagcaccttaccgtcttctctattgggcacaaaagttctcattagcaagacacagagaccaataataaggacacgtcattctcaggtcacttgttcagttgcttcttcttcttcgactctcccatcggctcttctatttgactgtgatggcgttcttgtcgatacggagaaagatgggcaccgcatttctttcaatgaaactttcaaagagaaagaattgggtgttacttgggatgtagatttgtatggcgaattgctcaagattggaggtggaaaagaaaggatgactgcctattttaacaagacgggttggccggaaaaagctccaaagggcgaggaagagagaaaagcattcatagcttcactgcacaagcgaaagactgaattgttcatggccctcattgagaagaagttgctgcctcttcgtccgggcgttgcaaagttgatagaccaggctttagcagaaggagttaaagttgctgtgtgcagcacttccaatgagaaggcggtatctgcaatagtttctttcttgctgggaccagagcgggcagagaaaatccagatatttgcaggagatgttgttccccgaaagaagcctgatccagccatctatgtattggcggctaacacactcaatgttgatccttcaagttgtgttgtggtagaggacagtggcataggccttgcagctgccaaagctgctggaatgaagtgtatagtaaccaagagcggttgtgttgtggtagaggacagtggcataggccttgcagctgcgaaagctgctggaatgaagtgtatagtaaccaagagcggatacacagccgatgaagactttcagaatgcagatgctgtctttgacttcataggagatcccccagaggagcggttcgacttggcattctgcagaagccttctcaagcattaccactacgggcctcaaaagttgaggttgttcaagtacaatgatgacggatacctccttgggttgatagatcaggctttagcagcagaaggagttaaagttgctgtgtgcagcagttccagtgagaaggcggttcggctgagttatgcatccgatgaagactttcagaatgcagatgctgtatttgacttcataggagatccccaagaggactacttggcattctgcagaagccctctcaagcagtacatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

423

Amino Acids

45.82

Weight (kDa)

6.67

Isoelectric Point (pI)

36.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48420
fragaria_vesca	FvH4_5g07070 FvH4_5g07070 FvH4_5g07070
malus_domestica	MD06G1160600.v1.1 MD14G1165800.v1.1
prunus_persica	Prupe.5G159700_v2.0.a1 Prupe.5G159800_v2.0.a1
pyrus_communis	pycom06g14360 pycom14g13840
rosa_chinensis	RchiOBHm_Chr7g0191481
rosa_laevigata	RLG00000004445
rosa_multiflora	Rmu_sc0002661.1_g000011
rosa_roxburghii	Rroxscaffold_157G00438420 Rroxscaffold_3G00263760
rosa_rugosa	Rorug06G0510500
rosa_samantha	Rh7AG118700 Rh7BG120700 Rh7CG123500 Rh7DG121600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	273
AccBSI	CCGCTC	4 cut(s)	640, 825, 906, 979
AciI	CCGC	8 cut(s)	277, 602, 640, 716, 825, 906, 979, 1148
AclWI	GGATC	4 cut(s)	689, 731, 959, 1211
AcoI	YGGCCR	1 cut(s)	407
AfaI	GTAC	2 cut(s)	1055, 1265
AflIII	ACRYGT	2 cut(s)	167, 1266
AgsI	TTSAA	4 cut(s)	289, 301, 744, 1051
AjiI	CACGTC	1 cut(s)	170
AjnI	CCWGG	1 cut(s)	546
AloI	GAACNNNNNNTCC	2 cut(s)	660, 692
AluBI	AGCT	7 cut(s)	23, 419, 455, 785, 794, 866, 875
AluI	AGCT	7 cut(s)	23, 419, 455, 785, 794, 866, 875
Alw26I	GTCTC	1 cut(s)	145
AlwI	GGATC	4 cut(s)	689, 731, 959, 1211
AlwNI	CAGNNNCTG	2 cut(s)	944, 1196
AoxI	GGCC	6 cut(s)	3, 407, 489, 775, 856, 1028
Asp700I	GAANNNNTTC	2 cut(s)	927, 1179
AspS9I	GGNCC	3 cut(s)	490, 632, 1028
AsuC2I	CCSGG	1 cut(s)	525
AvaII	GGWCC	1 cut(s)	632
BaeGI	GKGCMC	2 cut(s)	125, 276
BanI	GGYRCC	1 cut(s)	273
BbsI	GAAGAC	3 cut(s)	102, 930, 1182
BccI	CCATC	5 cut(s)	99, 226, 236, 263, 710
BciT130I	CCWGG	1 cut(s)	548
BciVI	GTATCC	2 cut(s)	902, 1061
BcnI	CCSGG	1 cut(s)	525
BcoDI	GTCTC	1 cut(s)	145
BfmI	CTRYAG	2 cut(s)	997, 1243
BfuI	GTATCC	2 cut(s)	902, 1061
Bme1390I	CCNGG	2 cut(s)	525, 548
Bme18I	GGWCC	1 cut(s)	632
BmgBI	CACGTC	1 cut(s)	170
BmgT120I	GGNCC	3 cut(s)	490, 632, 1028
BmiI	GGNNCC	2 cut(s)	275, 633
BmrFI	CCNGG	2 cut(s)	525, 548
BmsI	GCATC	3 cut(s)	931, 1175, 1183
BpiI	GAAGAC	3 cut(s)	102, 930, 1182
Bpu10I	CCTNAGC	1 cut(s)	19
BpuEI	CTTGAG	3 cut(s)	338, 995, 1241
BpuMI	CCSGG	1 cut(s)	525
BsaI	GGTCTC	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	1075
BsaXI	ACNNNNNCTCC	6 cut(s)	555, 585, 660, 690, 1101, 1131
Bse1I	ACTGG	1 cut(s)	1137
BseBI	CCWGG	1 cut(s)	548
BseDI	CCNNGG	1 cut(s)	1075
BseGI	GGATG	3 cut(s)	334, 384, 1166
BseMII	CTCAG	2 cut(s)	191, 1148
BseNI	ACTGG	1 cut(s)	1137
BseRI	GAGGAG	1 cut(s)	989
BseSI	GKGCMC	2 cut(s)	125, 276
BseYI	CCCAGC	1 cut(s)	628
BsgI	GTGCAG	3 cut(s)	446, 601, 1147
BshFI	GGCC	6 cut(s)	5, 409, 491, 777, 858, 1030
BshNI	GGYRCC	1 cut(s)	273
BsiSI	CCGG	2 cut(s)	410, 524
BslFI	GGGAC	1 cut(s)	645
BsmAI	GTCTC	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	645
BsmI	GAATGC	5 cut(s)	446, 940, 992, 1192, 1238
BsnI	GGCC	6 cut(s)	5, 409, 491, 777, 858, 1030
Bso31I	GGTCTC	1 cut(s)	145
Bsp1286I	GDGCHC	2 cut(s)	125, 276
Bsp143I	GATC	5 cut(s)	694, 736, 964, 1087, 1216
BspACI	CCGC	8 cut(s)	277, 602, 640, 716, 825, 906, 979, 1148
BspANI	GGCC	6 cut(s)	5, 409, 491, 777, 858, 1030
BspCNI	CTCAG	2 cut(s)	190, 1149
BspLI	GGNNCC	2 cut(s)	275, 633
BspMAI	CTGCAG	2 cut(s)	1001, 1247
BspPI	GGATC	4 cut(s)	689, 731, 959, 1211
BspQI	GCTCTTC	1 cut(s)	231
BspT107I	GGYRCC	1 cut(s)	273
BspTNI	GGTCTC	1 cut(s)	145
BsrBI	CCGCTC	4 cut(s)	640, 825, 906, 979
BsrI	ACTGG	1 cut(s)	1137
BssECI	CCNNGG	1 cut(s)	1075
BssMI	GATC	5 cut(s)	694, 736, 964, 1087, 1216
BssT1I	CCWWGG	1 cut(s)	1075
Bst2UI	CCWGG	1 cut(s)	548
Bst4CI	ACNGT	4 cut(s)	108, 239, 767, 848
Bst6I	CTCTTC	3 cut(s)	231, 429, 522
BstC8I	GCNNGC	1 cut(s)	642
BstDEI	CTNAG	3 cut(s)	19, 177, 1157
BstF5I	GGATG	3 cut(s)	334, 384, 1166
BstKTI	GATC	5 cut(s)	697, 739, 967, 1090, 1219
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	5 cut(s)	694, 736, 964, 1087, 1216
BstMWI	GCNNNNNNNGC	7 cut(s)	452, 608, 791, 794, 872, 875, 1100
BstNI	CCWGG	1 cut(s)	548
BstNSI	RCATGY	1 cut(s)	1270
BstSCI	CCNGG	2 cut(s)	523, 546
BstSFI	CTRYAG	2 cut(s)	997, 1243
BstSLI	GKGCMC	2 cut(s)	125, 276
BstV2I	GAAGAC	3 cut(s)	102, 930, 1182
BstX2I	RGATCY	2 cut(s)	964, 1216
BstYI	RGATCY	2 cut(s)	964, 1216
BsuI	GTATCC	2 cut(s)	902, 1061
BsuRI	GGCC	6 cut(s)	5, 409, 491, 777, 858, 1030
BtrI	CACGTC	1 cut(s)	170
BtsCI	GGATG	3 cut(s)	334, 384, 1166
BtsI	GCAGTG	1 cut(s)	458
BtsIMutI	CAGTG	4 cut(s)	458, 772, 853, 1144
Cac8I	GCNNGC	1 cut(s)	642
CaiI	CAGNNNCTG	2 cut(s)	944, 1196
Cfr13I	GGNCC	3 cut(s)	490, 632, 1028
Csp6I	GTAC	2 cut(s)	1054, 1264
CviAII	CATG	2 cut(s)	487, 1267
CviQI	GTAC	2 cut(s)	1054, 1264
DdeI	CTNAG	3 cut(s)	19, 177, 1157
DpnI	GATC	5 cut(s)	696, 738, 966, 1089, 1218
DpnII	GATC	5 cut(s)	694, 736, 964, 1087, 1216
EaeI	YGGCCR	1 cut(s)	407
Eam1104I	CTCTTC	3 cut(s)	231, 429, 522
EarI	CTCTTC	3 cut(s)	231, 429, 522
Eco130I	CCWWGG	1 cut(s)	1075
Eco147I	AGGCCT	2 cut(s)	777, 858
Eco31I	GGTCTC	1 cut(s)	145
Eco47I	GGWCC	1 cut(s)	632
EcoRII	CCWGG	1 cut(s)	546
EcoT14I	CCWWGG	1 cut(s)	1075
EcoT22I	ATGCAT	1 cut(s)	1168
ErhI	CCWWGG	1 cut(s)	1075
FaeI	CATG	2 cut(s)	490, 1270
FaqI	GGGAC	1 cut(s)	645
FatI	CATG	2 cut(s)	486, 1266
FauI	CCCGC	1 cut(s)	633
FokI	GGATG	3 cut(s)	341, 391, 1153
GsaI	CCCAGC	1 cut(s)	632
HaeIII	GGCC	6 cut(s)	5, 409, 491, 777, 858, 1030
HapII	CCGG	2 cut(s)	410, 524
Hin1II	CATG	2 cut(s)	490, 1270
HinfI	GANTC	1 cut(s)	211
HpaII	CCGG	2 cut(s)	410, 524
Hpy188I	TCNGA	3 cut(s)	933, 1171, 1185
Hpy188III	TCNNGA	2 cut(s)	355, 655
HpyAV	CCTTC	7 cut(s)	16, 554, 592, 750, 1016, 1100, 1138
HpyCH4III	ACNGT	4 cut(s)	108, 239, 767, 848
HpyCH4IV	ACGT	1 cut(s)	169
HpyF10VI	GCNNNNNNNGC	7 cut(s)	452, 608, 791, 794, 872, 875, 1100
HpyF3I	CTNAG	3 cut(s)	19, 177, 1157
HpySE526I	ACGT	1 cut(s)	169
Hsp92II	CATG	2 cut(s)	490, 1270
Kzo9I	GATC	5 cut(s)	694, 736, 964, 1087, 1216
LguI	GCTCTTC	1 cut(s)	231
LmnI	GCTCC	2 cut(s)	424, 976
LweI	GCATC	3 cut(s)	931, 1175, 1183
MaeII	ACGT	1 cut(s)	169
MaeIII	GTNAC	4 cut(s)	181, 319, 814, 895
MalI	GATC	5 cut(s)	696, 738, 966, 1089, 1218
MbiI	CCGCTC	4 cut(s)	640, 825, 906, 979
MboI	GATC	5 cut(s)	694, 736, 964, 1087, 1216
MflI	RGATCY	2 cut(s)	964, 1216
MhlI	GDGCHC	2 cut(s)	125, 276
MluCI	AATT	3 cut(s)	311, 347, 479
MlyI	GAGTC	1 cut(s)	205
MmeI	TCCRAC	1 cut(s)	102
Mph1103I	ATGCAT	1 cut(s)	1168
MroXI	GAANNNNTTC	2 cut(s)	927, 1179
MseI	TTAA	3 cut(s)	393, 567, 1113
MspA1I	CMGCKG	2 cut(s)	785, 866
MspI	CCGG	2 cut(s)	410, 524
MspR9I	CCNGG	2 cut(s)	525, 548
Mva1269I	GAATGC	5 cut(s)	446, 940, 992, 1192, 1238
MvaI	CCWGG	1 cut(s)	548
MwoI	GCNNNNNNNGC	7 cut(s)	452, 608, 791, 794, 872, 875, 1100
NciI	CCSGG	1 cut(s)	525
NdeII	GATC	5 cut(s)	694, 736, 964, 1087, 1216
NlaIII	CATG	2 cut(s)	490, 1270
NlaIV	GGNNCC	2 cut(s)	275, 633
NmuCI	GTSAC	1 cut(s)	181
NsiI	ATGCAT	1 cut(s)	1168
NspI	RCATGY	1 cut(s)	1270
PceI	AGGCCT	2 cut(s)	777, 858
PciI	ACATGT	1 cut(s)	1266
PciSI	GCTCTTC	1 cut(s)	231
PctI	GAATGC	5 cut(s)	446, 940, 992, 1192, 1238
PdmI	GAANNNNTTC	2 cut(s)	927, 1179
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PscI	ACATGT	1 cut(s)	1266
Psp6I	CCWGG	1 cut(s)	546
PspFI	CCCAGC	1 cut(s)	628
PspGI	CCWGG	1 cut(s)	546
PspN4I	GGNNCC	2 cut(s)	275, 633
PspPI	GGNCC	3 cut(s)	490, 632, 1028
PstI	CTGCAG	2 cut(s)	1001, 1247
PstNI	CAGNNNCTG	2 cut(s)	944, 1196
PsuI	RGATCY	2 cut(s)	964, 1216
PvuII	CAGCTG	2 cut(s)	785, 866
RsaI	GTAC	2 cut(s)	1055, 1265
RsaNI	GTAC	2 cut(s)	1054, 1264
SapI	GCTCTTC	1 cut(s)	231
SaqAI	TTAA	3 cut(s)	393, 567, 1113
Sau3AI	GATC	5 cut(s)	694, 736, 964, 1087, 1216
Sau96I	GGNCC	3 cut(s)	490, 632, 1028
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	2 cut(s)	525, 548
SduI	GDGCHC	2 cut(s)	125, 276
SfaNI	GCATC	3 cut(s)	931, 1175, 1183
SfcI	CTRYAG	2 cut(s)	997, 1243
SinI	GGWCC	1 cut(s)	632
SmlI	CTYRAG	3 cut(s)	353, 1010, 1256
SmoI	CTYRAG	3 cut(s)	353, 1010, 1256
Sse9I	AATT	3 cut(s)	311, 347, 479
SseBI	AGGCCT	2 cut(s)	777, 858
SsiI	CCGC	8 cut(s)	277, 602, 640, 716, 825, 906, 979, 1148
StuI	AGGCCT	2 cut(s)	777, 858
StyD4I	CCNGG	2 cut(s)	523, 546
StyI	CCWWGG	1 cut(s)	1075
TaaI	ACNGT	4 cut(s)	108, 239, 767, 848
TaiI	ACGT	1 cut(s)	172
TaqI	TCGA	3 cut(s)	209, 255, 984
TasI	AATT	3 cut(s)	311, 347, 479
TatI	WGTACW	2 cut(s)	1053, 1263
TauI	GCSGC	1 cut(s)	719
Tru1I	TTAA	3 cut(s)	393, 567, 1113
Tru9I	TTAA	3 cut(s)	393, 567, 1113
TscAI	CASTG	4 cut(s)	465, 772, 853, 1144
TseFI	GTSAC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	9 cut(s)	306, 439, 475, 818, 899, 936, 946, 1188, 1198
TspGWI	ACGGA	2 cut(s)	275, 1080
TspRI	CASTG	4 cut(s)	465, 772, 853, 1144
VpaK11BI	GGWCC	1 cut(s)	632
XceI	RCATGY	1 cut(s)	1270
XcmI	CCANNNNNNNNNTGG	1 cut(s)	709
XmnI	GAANNNNTTC	2 cut(s)	927, 1179
Zsp2I	ATGCAT	1 cut(s)	1168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.