Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0011244

Physical Location & Seq

Genomic Coordinates Reverse (-)

57601495 .. 57605242

Gene Structure 3748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00263760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCCTTAATCCACAATGATTTCAGAAATCGGGCGCTACATTATCTTCTACCAACCCTTTACAATCTCACAAAAAGACCACGTCCATTTCCAACCTCAAATCCCATCAAAGCACCTTACCATCTTCTCTATTGGGCACAAAAAGTTCTCACTAGCAAAACACAGAGACCAATAATAAGAACATGTCATTCTCAGGTCACTTGTTCAGCTGCTTCTTCTTCTTCGACTCTCCCATCGGCTCTTCTGTTTGACTGTGATGGCGTTCTTGTCGATACGGAGAAAGATGGGCACCGCATTTCTTTCAATGAAACTTTCAAAGAGAAAGAATTGGGTGTTACTTGGGATGTAGATTTGTATGGCGAATTGCTCAAGATTGGAGGTGGAAAAGAAAGGATGACTGCCTATTTTAACAAGACGGGTTGGCCGGAAAAAGCTCCGAAGAGTGAGGAAGAGAGAAAAGCATTCATAGCTTCACTGCACAAGCGAAAGACTGAATTGTTCATGGCCCTCATTGAGAAAAAGTTGCTGCCTCTTCGTCCGGGTGTTGCAAAGTTGATAGACCAGGCTTTAGCAGAAGGAGTTAAAGTTGCTGTGTGCAGCACTTCCAATGAGAAGGCGGTATCCGCAATAGTTTCTTTCTTGCTGGGACCAGAGCGGGCGGAGAAAATCCAGATATTTGCAGGAGATGTGGTTCCCCGAAAGAAGCCTGATCCCATTAACTTTACAAGACAAAAGTACACTACTGTTGCCATCTATGTATTGGCGGCTAACACGCTCAATGTTGATCCTTCAAGCTGTGTTGTGGTAGAAGACAGCGGCATAGGCCTTGCAGCTGCCAAAGCTGCTGGAATGAAGTGTATAGTAACCAAGAGCGGATACACAGCCGATGAAGACTTTCAGAATGCAGATGCTGTCTTTGACTTCATAGGAGATCCCCCAGAGGAGCGGTTCGACTTGGCATTCTGCAGAAGCCTTCTCAAGCAGTATGTGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

331

Amino Acids

36.72

Weight (kDa)

8.81

Isoelectric Point (pI)

33.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	80 - 283	6.5e-21	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	82 - 288	8.7e-13	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48420
fragaria_vesca	FvH4_5g07070 FvH4_5g07070 FvH4_5g07070
malus_domestica	MD06G1160600.v1.1 MD14G1165800.v1.1
prunus_persica	Prupe.5G159700_v2.0.a1 Prupe.5G159800_v2.0.a1
pyrus_communis	pycom06g14360 pycom14g13840
rosa_chinensis	RchiOBHm_Chr7g0191481
rosa_laevigata	RLG00000004445
rosa_multiflora	Rmu_sc0002661.1_g000011
rosa_roxburghii	Rroxscaffold_157G00438420 Rroxscaffold_3G00263760
rosa_rugosa	Rorug06G0510500
rosa_samantha	Rh7AG118700 Rh7BG120700 Rh7CG123500 Rh7DG121600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	288
AccBSI	CCGCTC	3 cut(s)	655, 873, 946
AciI	CCGC	9 cut(s)	292, 617, 624, 655, 659, 764, 816, 873, 946
AclWI	GGATC	3 cut(s)	704, 779, 926
AcoI	YGGCCR	1 cut(s)	422
AfaI	GTAC	1 cut(s)	737
AflIII	ACRYGT	1 cut(s)	182
AgsI	TTSAA	3 cut(s)	304, 316, 792
AjiI	CACGTC	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	561
AloI	GAACNNNNNNTCC	2 cut(s)	675, 707
AluBI	AGCT	7 cut(s)	209, 434, 470, 795, 833, 842, 993
AluI	AGCT	7 cut(s)	209, 434, 470, 795, 833, 842, 993
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	3 cut(s)	704, 779, 926
AlwNI	CAGNNNCTG	1 cut(s)	911
AoxI	GGCC	4 cut(s)	3, 422, 504, 823
ApeKI	GCWGC	6 cut(s)	209, 526, 597, 830, 833, 842
Asp700I	GAANNNNTTC	1 cut(s)	894
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	2 cut(s)	505, 647
AsuC2I	CCSGG	1 cut(s)	540
AvaII	GGWCC	1 cut(s)	647
BaeGI	GKGCMC	2 cut(s)	139, 291
BanI	GGYRCC	1 cut(s)	288
BbsI	GAAGAC	2 cut(s)	816, 897
BbvI	GCAGC	6 cut(s)	196, 513, 609, 820, 829, 842
BccI	CCATC	6 cut(s)	113, 129, 241, 251, 278, 758
BciT130I	CCWGG	1 cut(s)	563
BciVI	GTATCC	2 cut(s)	631, 869
BcnI	CCSGG	1 cut(s)	540
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	2 cut(s)	153, 994
BfmI	CTRYAG	1 cut(s)	964
BfoI	RGCGCY	1 cut(s)	38
BfuI	GTATCC	2 cut(s)	631, 869
BisI	GCNGC	8 cut(s)	210, 527, 598, 765, 817, 831, 834, 843
BlsI	GCNGC	8 cut(s)	211, 528, 599, 766, 818, 832, 835, 844
Bme1390I	CCNGG	2 cut(s)	540, 563
Bme18I	GGWCC	1 cut(s)	647
BmgBI	CACGTC	1 cut(s)	83
BmgT120I	GGNCC	2 cut(s)	505, 647
BmiI	GGNNCC	3 cut(s)	290, 648, 693
BmrFI	CCNGG	2 cut(s)	540, 563
BmsI	GCATC	1 cut(s)	898
BpiI	GAAGAC	2 cut(s)	816, 897
BpuEI	CTTGAG	2 cut(s)	353, 962
BpuMI	CCSGG	1 cut(s)	540
BsaI	GGTCTC	1 cut(s)	160
BsaXI	ACNNNNNCTCC	4 cut(s)	570, 600, 675, 705
BseBI	CCWGG	1 cut(s)	563
BseGI	GGATG	2 cut(s)	349, 399
BseMII	CTCAG	1 cut(s)	206
BseRI	GAGGAG	1 cut(s)	956
BseSI	GKGCMC	2 cut(s)	139, 291
BseXI	GCAGC	6 cut(s)	196, 513, 609, 820, 829, 842
BseYI	CCCAGC	1 cut(s)	643
BsgI	GTGCAG	2 cut(s)	461, 616
BshFI	GGCC	4 cut(s)	5, 424, 506, 825
BshNI	GGYRCC	1 cut(s)	288
BsiSI	CCGG	2 cut(s)	425, 539
BslFI	GGGAC	1 cut(s)	660
BsmAI	GTCTC	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	660
BsmI	GAATGC	3 cut(s)	461, 907, 959
BsnI	GGCC	4 cut(s)	5, 424, 506, 825
Bso31I	GGTCTC	1 cut(s)	160
Bsp1286I	GDGCHC	2 cut(s)	139, 291
Bsp143I	GATC	3 cut(s)	709, 784, 931
BspACI	CCGC	9 cut(s)	292, 617, 624, 655, 659, 764, 816, 873, 946
BspANI	GGCC	4 cut(s)	5, 424, 506, 825
BspCNI	CTCAG	1 cut(s)	205
BspLI	GGNNCC	3 cut(s)	290, 648, 693
BspMAI	CTGCAG	1 cut(s)	968
BspPI	GGATC	3 cut(s)	704, 779, 926
BspQI	GCTCTTC	1 cut(s)	246
BspT107I	GGYRCC	1 cut(s)	288
BspTNI	GGTCTC	1 cut(s)	160
BsrBI	CCGCTC	3 cut(s)	655, 873, 946
BssMI	GATC	3 cut(s)	709, 784, 931
Bst2UI	CCWGG	1 cut(s)	563
Bst4CI	ACNGT	2 cut(s)	254, 745
Bst6I	CTCTTC	4 cut(s)	246, 434, 444, 537
BstC8I	GCNNGC	1 cut(s)	657
BstDEI	CTNAG	1 cut(s)	192
BstF5I	GGATG	2 cut(s)	349, 399
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	3 cut(s)	712, 787, 934
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	3 cut(s)	709, 784, 931
BstMWI	GCNNNNNNNGC	5 cut(s)	467, 623, 822, 839, 842
BstNI	CCWGG	1 cut(s)	563
BstNSI	RCATGY	1 cut(s)	186
BstSCI	CCNGG	2 cut(s)	538, 561
BstSFI	CTRYAG	1 cut(s)	964
BstSLI	GKGCMC	2 cut(s)	139, 291
BstV1I	GCAGC	6 cut(s)	196, 513, 609, 820, 829, 842
BstV2I	GAAGAC	2 cut(s)	816, 897
BstX2I	RGATCY	1 cut(s)	931
BstYI	RGATCY	1 cut(s)	931
BsuI	GTATCC	2 cut(s)	631, 869
BsuRI	GGCC	4 cut(s)	5, 424, 506, 825
BtrI	CACGTC	1 cut(s)	83
BtsCI	GGATG	2 cut(s)	349, 399
BtsI	GCAGTG	1 cut(s)	473
BtsIMutI	CAGTG	1 cut(s)	473
Cac8I	GCNNGC	1 cut(s)	657
CaiI	CAGNNNCTG	1 cut(s)	911
CfoI	GCGC	1 cut(s)	37
Cfr13I	GGNCC	2 cut(s)	505, 647
Csp6I	GTAC	1 cut(s)	736
CviAII	CATG	2 cut(s)	183, 502
CviQI	GTAC	1 cut(s)	736
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	3 cut(s)	711, 786, 933
DpnII	GATC	3 cut(s)	709, 784, 931
EaeI	YGGCCR	1 cut(s)	422
Eam1104I	CTCTTC	4 cut(s)	246, 434, 444, 537
EarI	CTCTTC	4 cut(s)	246, 434, 444, 537
EciI	GGCGGA	1 cut(s)	674
Eco147I	AGGCCT	1 cut(s)	825
Eco31I	GGTCTC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	647
EcoRII	CCWGG	1 cut(s)	561
FaeI	CATG	2 cut(s)	186, 505
FaiI	YATR	9 cut(s)	184, 357, 467, 503, 756, 821, 860, 926, 987
FaqI	GGGAC	1 cut(s)	660
FatI	CATG	2 cut(s)	182, 501
FauI	CCCGC	1 cut(s)	648
Fnu4HI	GCNGC	8 cut(s)	210, 527, 598, 765, 817, 831, 834, 843
FokI	GGATG	2 cut(s)	356, 406
Fsp4HI	GCNGC	8 cut(s)	210, 527, 598, 765, 817, 831, 834, 843
FspBI	CTAG	2 cut(s)	153, 994
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	8 cut(s)	210, 527, 598, 765, 817, 831, 834, 843
GsaI	CCCAGC	1 cut(s)	647
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	4 cut(s)	5, 424, 506, 825
HapII	CCGG	2 cut(s)	425, 539
HhaI	GCGC	1 cut(s)	37
Hin1II	CATG	2 cut(s)	186, 505
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HinfI	GANTC	1 cut(s)	226
HpaII	CCGG	2 cut(s)	425, 539
Hpy166II	GTNNAC	1 cut(s)	738
Hpy188I	TCNGA	3 cut(s)	26, 438, 900
Hpy188III	TCNNGA	2 cut(s)	370, 670
Hpy8I	GTNNAC	1 cut(s)	738
HpyAV	CCTTC	4 cut(s)	569, 607, 798, 983
HpyCH4III	ACNGT	2 cut(s)	254, 745
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	7 cut(s)	478, 548, 597, 680, 830, 905, 966
HpyF10VI	GCNNNNNNNGC	5 cut(s)	467, 623, 822, 839, 842
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	1 cut(s)	82
Hsp92II	CATG	2 cut(s)	186, 505
HspAI	GCGC	1 cut(s)	35
Kzo9I	GATC	3 cut(s)	709, 784, 931
LguI	GCTCTTC	1 cut(s)	246
LmnI	GCTCC	2 cut(s)	439, 943
Lsp1109I	GCAGC	6 cut(s)	196, 513, 609, 820, 829, 842
LweI	GCATC	1 cut(s)	898
MaeI	CTAG	2 cut(s)	153, 994
MaeII	ACGT	1 cut(s)	82
MaeIII	GTNAC	3 cut(s)	196, 334, 862
MalI	GATC	3 cut(s)	711, 786, 933
MbiI	CCGCTC	3 cut(s)	655, 873, 946
MboI	GATC	3 cut(s)	709, 784, 931
MflI	RGATCY	1 cut(s)	931
MhlI	GDGCHC	2 cut(s)	139, 291
MluCI	AATT	3 cut(s)	326, 362, 494
MlyI	GAGTC	1 cut(s)	220
MmeI	TCCRAC	1 cut(s)	116
MnlI	CCTC	6 cut(s)	106, 371, 439, 518, 540, 934
MroXI	GAANNNNTTC	1 cut(s)	894
MseI	TTAA	4 cut(s)	8, 408, 582, 717
MspA1I	CMGCKG	3 cut(s)	209, 816, 833
MspI	CCGG	2 cut(s)	425, 539
MspR9I	CCNGG	2 cut(s)	540, 563
Mva1269I	GAATGC	3 cut(s)	461, 907, 959
MvaI	CCWGG	1 cut(s)	563
MwoI	GCNNNNNNNGC	5 cut(s)	467, 623, 822, 839, 842
NciI	CCSGG	1 cut(s)	540
NdeII	GATC	3 cut(s)	709, 784, 931
NlaIII	CATG	2 cut(s)	186, 505
NlaIV	GGNNCC	3 cut(s)	290, 648, 693
NmuCI	GTSAC	1 cut(s)	196
NspI	RCATGY	1 cut(s)	186
PceI	AGGCCT	1 cut(s)	825
PciI	ACATGT	1 cut(s)	182
PciSI	GCTCTTC	1 cut(s)	246
PctI	GAATGC	3 cut(s)	461, 907, 959
PdmI	GAANNNNTTC	1 cut(s)	894
PflFI	GACNNNGTC	1 cut(s)	81
PkrI	GCNGC	8 cut(s)	211, 528, 599, 766, 818, 832, 835, 844
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
PscI	ACATGT	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	561
PspFI	CCCAGC	1 cut(s)	643
PspGI	CCWGG	1 cut(s)	561
PspN4I	GGNNCC	3 cut(s)	290, 648, 693
PspPI	GGNCC	2 cut(s)	505, 647
PstI	CTGCAG	1 cut(s)	968
PstNI	CAGNNNCTG	1 cut(s)	911
PsuI	RGATCY	1 cut(s)	931
PsyI	GACNNNGTC	1 cut(s)	81
PvuII	CAGCTG	2 cut(s)	209, 833
RsaI	GTAC	1 cut(s)	737
RsaNI	GTAC	1 cut(s)	736
SapI	GCTCTTC	1 cut(s)	246
SaqAI	TTAA	4 cut(s)	8, 408, 582, 717
SatI	GCNGC	8 cut(s)	210, 527, 598, 765, 817, 831, 834, 843
Sau3AI	GATC	3 cut(s)	709, 784, 931
Sau96I	GGNCC	2 cut(s)	505, 647
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	2 cut(s)	540, 563
SduI	GDGCHC	2 cut(s)	139, 291
SfaNI	GCATC	1 cut(s)	898
SfcI	CTRYAG	1 cut(s)	964
SinI	GGWCC	1 cut(s)	647
SmlI	CTYRAG	2 cut(s)	368, 977
SmoI	CTYRAG	2 cut(s)	368, 977
Sse9I	AATT	3 cut(s)	326, 362, 494
SseBI	AGGCCT	1 cut(s)	825
SsiI	CCGC	9 cut(s)	292, 617, 624, 655, 659, 764, 816, 873, 946
SspMI	CTAG	2 cut(s)	153, 994
StuI	AGGCCT	1 cut(s)	825
StyD4I	CCNGG	2 cut(s)	538, 561
TaaI	ACNGT	2 cut(s)	254, 745
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	3 cut(s)	224, 270, 951
TasI	AATT	3 cut(s)	326, 362, 494
TatI	WGTACW	1 cut(s)	735
TauI	GCSGC	2 cut(s)	767, 819
Tru1I	TTAA	4 cut(s)	8, 408, 582, 717
Tru9I	TTAA	4 cut(s)	8, 408, 582, 717
TscAI	CASTG	1 cut(s)	480
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	6 cut(s)	209, 526, 597, 830, 833, 842
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	6 cut(s)	321, 454, 490, 866, 903, 913
TspGWI	ACGGA	1 cut(s)	290
TspRI	CASTG	1 cut(s)	480
Tth111I	GACNNNGTC	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	647
XceI	RCATGY	1 cut(s)	186
XcmI	CCANNNNNNNNNTGG	1 cut(s)	757
XmnI	GAANNNNTTC	1 cut(s)	894
XspI	CTAG	2 cut(s)	153, 994

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.