Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0011244

Physical Location & Seq

Genomic Coordinates Forward (+)

14123310 .. 14126553

Gene Structure 3244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G159800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCGTCAATGGCTGTCTGTTATTCCTTAGCTACATTATCTTCTACGAAACCTTTGCTATCTCACAAAAATACCACCTCCATTGCCAACCTCAAATCCCATGAAAGGACCTTGCAATCTTCACTTGTGGGTACAAAAATAGCCATTAGCAAAACAACAAGACCATTGAGCAGCAGGAGGCTTGGAACATCCAGTTCTGAGATCACTTGCTCAGCTTCTGCTTCTCCTCTTCCTTCGGCTCTTCTCTTTGATTGCGATGGCGTGCTTGTCGATACGGAGAAGGATGGCCACCGCATTTCTTTCAATGACACTTTCAAAGAGAAAGAATTGGGTGTTACTTGGGATGTAGATTTGTACGGCGAGTTGCTCAAGATTGGAGGTGGAAAAGAAAGGATGACAGCCTATTTTAACAAGACGGGTTGGCCAGAAAATGCTCCGAAAAGTGAAGAAGAAAGAAAAGCATTCATAGCTTCACTTCACAAAAGAAAGACAGAGTTGTTTATGGCCCTTATTGAGAAAAAGCTGCTGCCGCTTCGGCCAGGAGTTGCAAAGCTGATAGATCAGGCTTTAGCAGAAGGAGTTAAGGTTGCTGTGTGCAGCACTTCCAATGAGAAGGCGGTCTCTGCAATAGTTACATTCTTGCTGGGACCAGAACGGGCAGAAAAAATCAAGATATTCGCAGGAGATGTGGTTCCCCGGAAGAAGCCTGATCCAGCCATCTATGTATTGGCGGCTAACACTCTTGGTGTTGATCCTTCAAGTTGTGTTGTGATAGAGGACAGCGGCATAGGCCTTGCAGCTGCCAAAGCTGCTGGAATGAAGTGTATAGTAACTAAGAGCGGATACACAGCCAATGAAGACTTTCTGAATGCAGATGCAGTCTTTGACTTCATTGGAGATCCGCCGGAAGAGCGATTTGACTTGGCATTCTGCAGAAGCCTTCTCAAGCAGTACGTGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

321

Amino Acids

34.53

Weight (kDa)

8.36

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48420
fragaria_vesca	FvH4_5g07070 FvH4_5g07070 FvH4_5g07070
malus_domestica	MD06G1160600.v1.1 MD14G1165800.v1.1
prunus_persica	Prupe.5G159700_v2.0.a1 Prupe.5G159800_v2.0.a1
pyrus_communis	pycom06g14360 pycom14g13840
rosa_chinensis	RchiOBHm_Chr7g0191481
rosa_laevigata	RLG00000004445
rosa_multiflora	Rmu_sc0002661.1_g000011
rosa_roxburghii	Rroxscaffold_157G00438420 Rroxscaffold_3G00263760
rosa_rugosa	Rorug06G0510500
rosa_samantha	Rh7AG118700 Rh7BG120700 Rh7CG123500 Rh7DG121600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	840
AciI	CCGC	7 cut(s)	292, 530, 617, 731, 783, 840, 902
AclWI	GGATC	3 cut(s)	704, 746, 893
AcoI	YGGCCR	3 cut(s)	286, 422, 536
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	133, 356, 953
AfiI	CCNNNNNNNGG	1 cut(s)	105
AgsI	TTSAA	3 cut(s)	304, 316, 759
AjnI	CCWGG	1 cut(s)	538
AloI	GAACNNNNNNTCC	2 cut(s)	675, 707
AluBI	AGCT	8 cut(s)	32, 215, 470, 523, 553, 800, 809, 960
AluI	AGCT	8 cut(s)	32, 215, 470, 523, 553, 800, 809, 960
Alw26I	GTCTC	1 cut(s)	625
AlwI	GGATC	3 cut(s)	704, 746, 893
AlwNI	CAGNNNCTG	1 cut(s)	218
AoxI	GGCC	5 cut(s)	286, 422, 504, 536, 790
ApeKI	GCWGC	7 cut(s)	171, 523, 526, 597, 797, 800, 809
Asp700I	GAANNNNTTC	1 cut(s)	861
AspS9I	GGNCC	3 cut(s)	108, 505, 647
AsuC2I	CCSGG	1 cut(s)	697
AvaII	GGWCC	2 cut(s)	108, 647
BalI	TGGCCA	2 cut(s)	288, 424
BbsI	GAAGAC	1 cut(s)	864
BbvI	GCAGC	7 cut(s)	183, 510, 513, 609, 787, 796, 809
BccI	CCATC	3 cut(s)	251, 278, 725
BceAI	ACGGC	1 cut(s)	373
BcgI	CGANNNNNNTGC	2 cut(s)	37, 71
BciT130I	CCWGG	1 cut(s)	540
BciVI	GTATCC	1 cut(s)	836
BcnI	CCSGG	1 cut(s)	697
BcoDI	GTCTC	1 cut(s)	625
BfaI	CTAG	1 cut(s)	961
BfmI	CTRYAG	1 cut(s)	931
BfuI	GTATCC	1 cut(s)	836
BglI	GCCNNNNNGGC	1 cut(s)	535
BlpI	GCTNAGC	1 cut(s)	211
Bme1390I	CCNGG	2 cut(s)	540, 697
Bme18I	GGWCC	2 cut(s)	108, 647
BmgT120I	GGNCC	3 cut(s)	108, 505, 647
BmiI	GGNNCC	2 cut(s)	648, 693
BmrFI	CCNGG	2 cut(s)	540, 697
BmsI	GCATC	1 cut(s)	865
BpiI	GAAGAC	1 cut(s)	864
Bpu10I	CCTNAGC	1 cut(s)	28
Bpu1102I	GCTNAGC	1 cut(s)	211
BpuEI	CTTGAG	2 cut(s)	353, 929
BpuMI	CCSGG	1 cut(s)	697
BsaAI	YACGTR	1 cut(s)	955
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	625
BsaJI	CCNNGG	1 cut(s)	695
BsaXI	ACNNNNNCTCC	4 cut(s)	570, 600, 675, 705
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse1I	ACTGG	1 cut(s)	192
Bse3DI	GCAATG	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	1 cut(s)	695
BseGI	GGATG	4 cut(s)	188, 289, 349, 399
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	2 cut(s)	189, 225
BseNI	ACTGG	1 cut(s)	192
BseRI	GAGGAG	1 cut(s)	216
BseXI	GCAGC	7 cut(s)	183, 510, 513, 609, 787, 796, 809
BseYI	CCCAGC	1 cut(s)	643
BsgI	GTGCAG	1 cut(s)	616
BshFI	GGCC	5 cut(s)	288, 424, 506, 538, 792
BsiSI	CCGG	2 cut(s)	697, 905
BslFI	GGGAC	1 cut(s)	660
BslI	CCNNNNNNNGG	1 cut(s)	105
BsmAI	GTCTC	1 cut(s)	625
BsmFI	GGGAC	1 cut(s)	660
BsmI	GAATGC	3 cut(s)	461, 874, 926
BsnI	GGCC	5 cut(s)	288, 424, 506, 538, 792
Bso31I	GGTCTC	1 cut(s)	625
Bsp143I	GATC	5 cut(s)	201, 559, 709, 751, 898
Bsp1720I	GCTNAGC	1 cut(s)	211
BspACI	CCGC	7 cut(s)	292, 530, 617, 731, 783, 840, 902
BspANI	GGCC	5 cut(s)	288, 424, 506, 538, 792
BspCNI	CTCAG	2 cut(s)	190, 224
BspLI	GGNNCC	2 cut(s)	648, 693
BspMAI	CTGCAG	1 cut(s)	935
BspPI	GGATC	3 cut(s)	704, 746, 893
BspQI	GCTCTTC	2 cut(s)	246, 903
BspTNI	GGTCTC	1 cut(s)	625
BsrBI	CCGCTC	1 cut(s)	840
BsrDI	GCAATG	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	695
BssMI	GATC	5 cut(s)	201, 559, 709, 751, 898
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	540
Bst6I	CTCTTC	3 cut(s)	234, 246, 903
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	955
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	4 cut(s)	28, 198, 211, 834
BstF5I	GGATG	4 cut(s)	188, 289, 349, 399
BstKTI	GATC	5 cut(s)	204, 562, 712, 754, 901
BstMAI	GTCTC	1 cut(s)	625
BstMBI	GATC	5 cut(s)	201, 559, 709, 751, 898
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 467, 529, 535, 623, 789, 806, 809, 910
BstNI	CCWGG	1 cut(s)	540
BstSCI	CCNGG	2 cut(s)	538, 695
BstSFI	CTRYAG	1 cut(s)	931
BstV1I	GCAGC	7 cut(s)	183, 510, 513, 609, 787, 796, 809
BstV2I	GAAGAC	1 cut(s)	864
BstX2I	RGATCY	1 cut(s)	898
BstYI	RGATCY	1 cut(s)	898
BsuI	GTATCC	1 cut(s)	836
BsuRI	GGCC	5 cut(s)	288, 424, 506, 538, 792
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	4 cut(s)	188, 289, 349, 399
Cac8I	GCNNGC	1 cut(s)	263
CaiI	CAGNNNCTG	1 cut(s)	218
Cfr13I	GGNCC	3 cut(s)	108, 505, 647
Csp6I	GTAC	3 cut(s)	132, 355, 952
CspCI	CAANNNNNGTGG	2 cut(s)	64, 99
CviAII	CATG	1 cut(s)	101
CviQI	GTAC	3 cut(s)	132, 355, 952
DdeI	CTNAG	4 cut(s)	28, 198, 211, 834
DpnI	GATC	5 cut(s)	203, 561, 711, 753, 900
DpnII	GATC	5 cut(s)	201, 559, 709, 751, 898
EaeI	YGGCCR	3 cut(s)	286, 422, 536
Eam1104I	CTCTTC	3 cut(s)	234, 246, 903
EarI	CTCTTC	3 cut(s)	234, 246, 903
EciI	GGCGGA	1 cut(s)	891
Eco147I	AGGCCT	1 cut(s)	792
Eco31I	GGTCTC	1 cut(s)	625
Eco47I	GGWCC	2 cut(s)	108, 647
EcoO109I	RGGNCCY	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	538
FaeI	CATG	1 cut(s)	104
FaiI	YATR	6 cut(s)	102, 467, 503, 723, 788, 827
FaqI	GGGAC	1 cut(s)	660
FatI	CATG	1 cut(s)	100
FokI	GGATG	4 cut(s)	175, 296, 356, 406
FspBI	CTAG	1 cut(s)	961
GsaI	CCCAGC	1 cut(s)	647
HaeIII	GGCC	5 cut(s)	288, 424, 506, 538, 792
HapII	CCGG	2 cut(s)	697, 905
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	104
HpaII	CCGG	2 cut(s)	697, 905
Hpy188I	TCNGA	3 cut(s)	199, 438, 867
Hpy188III	TCNNGA	2 cut(s)	370, 670
HpyAV	CCTTC	6 cut(s)	243, 274, 569, 607, 765, 950
HpyCH4IV	ACGT	1 cut(s)	954
HpyCH4V	TGCA	8 cut(s)	115, 548, 597, 626, 797, 872, 878, 933
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 467, 529, 535, 623, 789, 806, 809, 910
HpyF3I	CTNAG	4 cut(s)	28, 198, 211, 834
HpySE526I	ACGT	1 cut(s)	954
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	104
Kzo9I	GATC	5 cut(s)	201, 559, 709, 751, 898
LguI	GCTCTTC	2 cut(s)	246, 903
LmnI	GCTCC	1 cut(s)	439
Lsp1109I	GCAGC	7 cut(s)	183, 510, 513, 609, 787, 796, 809
LweI	GCATC	1 cut(s)	865
MaeI	CTAG	1 cut(s)	961
MaeII	ACGT	1 cut(s)	954
MaeIII	GTNAC	3 cut(s)	334, 631, 829
MalI	GATC	5 cut(s)	203, 561, 711, 753, 900
MbiI	CCGCTC	1 cut(s)	840
MboI	GATC	5 cut(s)	201, 559, 709, 751, 898
MboII	GAAGA	9 cut(s)	33, 111, 221, 233, 458, 461, 712, 869, 920
MflI	RGATCY	1 cut(s)	898
MlsI	TGGCCA	2 cut(s)	288, 424
MluCI	AATT	1 cut(s)	326
MluNI	TGGCCA	2 cut(s)	288, 424
MnlI	CCTC	6 cut(s)	88, 101, 171, 237, 371, 769
Mox20I	TGGCCA	2 cut(s)	288, 424
MroXI	GAANNNNTTC	1 cut(s)	861
MscI	TGGCCA	2 cut(s)	288, 424
MseI	TTAA	2 cut(s)	408, 582
Msp20I	TGGCCA	2 cut(s)	288, 424
MspA1I	CMGCKG	2 cut(s)	783, 800
MspI	CCGG	2 cut(s)	697, 905
MspR9I	CCNGG	2 cut(s)	540, 697
Mva1269I	GAATGC	3 cut(s)	461, 874, 926
MvaI	CCWGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	9 cut(s)	11, 467, 529, 535, 623, 789, 806, 809, 910
NciI	CCSGG	1 cut(s)	697
NdeII	GATC	5 cut(s)	201, 559, 709, 751, 898
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	2 cut(s)	648, 693
PceI	AGGCCT	1 cut(s)	792
PciSI	GCTCTTC	2 cut(s)	246, 903
PctI	GAATGC	3 cut(s)	461, 874, 926
PdmI	GAANNNNTTC	1 cut(s)	861
Ppu21I	YACGTR	1 cut(s)	955
PpuMI	RGGWCCY	1 cut(s)	108
Psp5II	RGGWCCY	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	538
PspFI	CCCAGC	1 cut(s)	643
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	2 cut(s)	648, 693
PspPI	GGNCC	3 cut(s)	108, 505, 647
PspPPI	RGGWCCY	1 cut(s)	108
PstI	CTGCAG	1 cut(s)	935
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	898
PvuII	CAGCTG	1 cut(s)	800
RsaI	GTAC	3 cut(s)	133, 356, 953
RsaNI	GTAC	3 cut(s)	132, 355, 952
SapI	GCTCTTC	2 cut(s)	246, 903
SaqAI	TTAA	2 cut(s)	408, 582
Sau3AI	GATC	5 cut(s)	201, 559, 709, 751, 898
Sau96I	GGNCC	3 cut(s)	108, 505, 647
ScrFI	CCNGG	2 cut(s)	540, 697
SfaNI	GCATC	1 cut(s)	865
SfcI	CTRYAG	1 cut(s)	931
SinI	GGWCC	2 cut(s)	108, 647
SmlI	CTYRAG	2 cut(s)	368, 944
SmoI	CTYRAG	2 cut(s)	368, 944
Sse9I	AATT	1 cut(s)	326
SseBI	AGGCCT	1 cut(s)	792
SsiI	CCGC	7 cut(s)	292, 530, 617, 731, 783, 840, 902
SspMI	CTAG	1 cut(s)	961
StuI	AGGCCT	1 cut(s)	792
StyD4I	CCNGG	2 cut(s)	538, 695
TaiI	ACGT	1 cut(s)	957
TaqI	TCGA	1 cut(s)	270
TasI	AATT	1 cut(s)	326
TauI	GCSGC	3 cut(s)	532, 734, 786
Tru1I	TTAA	2 cut(s)	408, 582
Tru9I	TTAA	2 cut(s)	408, 582
TseI	GCWGC	7 cut(s)	171, 523, 526, 597, 797, 800, 809
TspDTI	ATGAA	5 cut(s)	117, 454, 833, 870, 880
TspGWI	ACGGA	1 cut(s)	290
VpaK11BI	GGWCC	2 cut(s)	108, 647
XcmI	CCANNNNNNNNNTGG	1 cut(s)	724
XmnI	GAANNNNTTC	1 cut(s)	861
XspI	CTAG	1 cut(s)	961

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.