Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0011244

Physical Location & Seq

Genomic Coordinates Forward (+)

16685390 .. 16687868

Gene Structure 2479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g13840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCGTCGATGGCTGTCTGTCATTCCTTAGCAACATTATCTTCTACGAAACCTTTGCTATCTCAAAAAAAGACAACCTCCATTGCCAACCTCAAATCCCACGAAAGGGTCTTACAATCTTCACTGTTGGGCACAAGAATACTGATTAGAAAAACAACGGTGCCATTTAGCGGCAGGGTTGGAACAACATCGACTTCTGAGGTCACTTGCTCTGCCTCTTCTTCCACTCTTCCTTCGGCTCTTCTCTTCGACTGCGATGGCGTGCTTGTCGATACAGAGAAGGACGGGCACCGCATTTCTTTCAACGACACTTTCAAAGAGAAAGAACTGGGTGTTACTTGGGATGTCGATTTATACGGCGAGTTGCTCAAGATTGGAGGTGGAAAAGAAAGGATGACAGCCTATTTTAACAAGACGGGTTGGCCAGAAAAAGCTCCGAAGAGTGAAGAAGAACGAAAAGCATTCATAGCTTCACTGCACAAGAGAAAGACGGAGTTGTTCATGGCCCTTATTGAGAAAAAGTTGCTGCCTCTTAGACCGGGAGTTGCAAAGCTGATAGACCAGGCTTTGGCAGACGGAGTTAAAGTTGCTGTGTGCAGCACTTCCAATGAGAAGGCGGTCTCTGCAATAGTTTCATTCTTGCTGGGACCAGAACGGGCAGAAAAAATCAAGATATTTGCAGGAGATGTCGTTCCTCGCAAGAAACCTGATCCGGCCATCTATGTATTGGCGGCTAACACTCTTGGTGTTGATCCTTCGAGTTGTGTTGTGATCGAGGACAGCGGCATAGGCCTTGCAGCTGCCAAAGCAGCAGGAATGAAGTGTATAGTAACGAAAAGCGGGTACACAGCCGAAGAAGACTTTCAGAATGCAGATGCGGTCTTTGACTTCATTGGAGATCCCCCGGAGGAGCGATTTGACTTGGGATTCTGTAGAAGCCTTCTCAAGCAGTACGTAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

321

Amino Acids

34.56

Weight (kDa)

8.36

Isoelectric Point (pI)

34.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48420
fragaria_vesca	FvH4_5g07070 FvH4_5g07070 FvH4_5g07070
malus_domestica	MD06G1160600.v1.1 MD14G1165800.v1.1
prunus_persica	Prupe.5G159700_v2.0.a1 Prupe.5G159800_v2.0.a1
pyrus_communis	pycom06g14360 pycom14g13840
rosa_chinensis	RchiOBHm_Chr7g0191481
rosa_laevigata	RLG00000004445
rosa_multiflora	Rmu_sc0002661.1_g000011
rosa_roxburghii	Rroxscaffold_157G00438420 Rroxscaffold_3G00263760
rosa_rugosa	Rorug06G0510500
rosa_samantha	Rh7AG118700 Rh7BG120700 Rh7CG123500 Rh7DG121600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	160, 288
AccB7I	CCANNNNNTGG	1 cut(s)	568
AciI	CCGC	7 cut(s)	171, 292, 617, 731, 783, 840, 878
AclWI	GGATC	3 cut(s)	704, 746, 893
AcoI	YGGCCR	2 cut(s)	422, 714
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	845, 953
AfiI	CCNNNNNNNGG	4 cut(s)	105, 106, 170, 568
AgsI	TTSAA	2 cut(s)	304, 316
AjnI	CCWGG	1 cut(s)	561
AloI	GAACNNNNNNTCC	2 cut(s)	675, 707
AluBI	AGCT	5 cut(s)	434, 470, 553, 800, 960
AluI	AGCT	5 cut(s)	434, 470, 553, 800, 960
Alw26I	GTCTC	1 cut(s)	625
AlwI	GGATC	3 cut(s)	704, 746, 893
AoxI	GGCC	4 cut(s)	422, 504, 714, 790
ApeKI	GCWGC	5 cut(s)	526, 597, 797, 800, 809
Asp700I	GAANNNNTTC	1 cut(s)	861
AspS9I	GGNCC	2 cut(s)	505, 647
AsuC2I	CCSGG	2 cut(s)	540, 905
AvaII	GGWCC	1 cut(s)	647
BaeGI	GKGCMC	2 cut(s)	134, 291
BalI	TGGCCA	1 cut(s)	424
BanI	GGYRCC	2 cut(s)	160, 288
BbsI	GAAGAC	1 cut(s)	864
BbvI	GCAGC	5 cut(s)	513, 609, 787, 809, 821
BccI	CCATC	3 cut(s)	4, 251, 725
BceAI	ACGGC	1 cut(s)	373
BcgI	CGANNNNNNTGC	2 cut(s)	37, 71
BciT130I	CCWGG	1 cut(s)	563
BcnI	CCSGG	2 cut(s)	540, 905
BcoDI	GTCTC	1 cut(s)	625
BfaI	CTAG	1 cut(s)	961
BfmI	CTRYAG	1 cut(s)	931
BisI	GCNGC	8 cut(s)	172, 527, 598, 732, 784, 798, 801, 810
BlsI	GCNGC	8 cut(s)	173, 528, 599, 733, 785, 799, 802, 811
Bme1390I	CCNGG	3 cut(s)	540, 563, 905
Bme18I	GGWCC	1 cut(s)	647
BmgT120I	GGNCC	2 cut(s)	505, 647
BmiI	GGNNCC	3 cut(s)	162, 290, 648
BmrFI	CCNGG	3 cut(s)	540, 563, 905
BmrI	ACTGGG	1 cut(s)	338
BmsI	GCATC	1 cut(s)	865
BmuI	ACTGGG	1 cut(s)	338
BpiI	GAAGAC	1 cut(s)	864
Bpu10I	CCTNAGC	1 cut(s)	28
BpuEI	CTTGAG	2 cut(s)	353, 929
BpuMI	CCSGG	2 cut(s)	540, 905
BsaAI	YACGTR	1 cut(s)	955
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	625
BsaJI	CCNNGG	1 cut(s)	903
BsaXI	ACNNNNNCTCC	4 cut(s)	570, 600, 675, 705
Bsc4I	CCNNNNNNNGG	4 cut(s)	105, 106, 170, 568
Bse1I	ACTGG	1 cut(s)	333
Bse3DI	GCAATG	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	563
BseDI	CCNNGG	1 cut(s)	903
BseGI	GGATG	2 cut(s)	349, 399
BseLI	CCNNNNNNNGG	4 cut(s)	105, 106, 170, 568
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	1 cut(s)	333
BseRI	GAGGAG	1 cut(s)	923
BseSI	GKGCMC	2 cut(s)	134, 291
BseXI	GCAGC	5 cut(s)	513, 609, 787, 809, 821
BseYI	CCCAGC	1 cut(s)	643
BsgI	GTGCAG	2 cut(s)	461, 616
BshFI	GGCC	4 cut(s)	424, 506, 716, 792
BshNI	GGYRCC	2 cut(s)	160, 288
BsiSI	CCGG	3 cut(s)	539, 713, 905
BslFI	GGGAC	1 cut(s)	660
BslI	CCNNNNNNNGG	4 cut(s)	105, 106, 170, 568
BsmAI	GTCTC	1 cut(s)	625
BsmFI	GGGAC	1 cut(s)	660
BsmI	GAATGC	2 cut(s)	461, 874
BsnI	GGCC	4 cut(s)	424, 506, 716, 792
Bso31I	GGTCTC	1 cut(s)	625
Bsp1286I	GDGCHC	2 cut(s)	134, 291
Bsp143I	GATC	4 cut(s)	709, 751, 771, 898
BspACI	CCGC	7 cut(s)	171, 292, 617, 731, 783, 840, 878
BspANI	GGCC	4 cut(s)	424, 506, 716, 792
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	3 cut(s)	162, 290, 648
BspPI	GGATC	3 cut(s)	704, 746, 893
BspQI	GCTCTTC	1 cut(s)	246
BspT107I	GGYRCC	2 cut(s)	160, 288
BspTNI	GGTCTC	1 cut(s)	625
BsrDI	GCAATG	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	333
BssECI	CCNNGG	1 cut(s)	903
BssMI	GATC	4 cut(s)	709, 751, 771, 898
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	563
Bst4CI	ACNGT	2 cut(s)	126, 160
Bst6I	CTCTTC	5 cut(s)	223, 234, 246, 251, 434
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	955
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	3 cut(s)	28, 198, 533
BstF5I	GGATG	2 cut(s)	349, 399
BstKTI	GATC	4 cut(s)	712, 754, 774, 901
BstMAI	GTCTC	1 cut(s)	625
BstMBI	GATC	4 cut(s)	709, 751, 771, 898
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 467, 623, 789, 806, 809
BstNI	CCWGG	1 cut(s)	563
BstSCI	CCNGG	3 cut(s)	538, 561, 903
BstSFI	CTRYAG	1 cut(s)	931
BstSLI	GKGCMC	2 cut(s)	134, 291
BstSNI	TACGTA	1 cut(s)	955
BstV1I	GCAGC	5 cut(s)	513, 609, 787, 809, 821
BstV2I	GAAGAC	1 cut(s)	864
BstX2I	RGATCY	1 cut(s)	898
BstYI	RGATCY	1 cut(s)	898
BsuRI	GGCC	4 cut(s)	424, 506, 716, 792
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	2 cut(s)	349, 399
BtsI	GCAGTG	1 cut(s)	473
BtsIMutI	CAGTG	2 cut(s)	122, 473
Cac8I	GCNNGC	1 cut(s)	263
Cfr13I	GGNCC	2 cut(s)	505, 647
Csp6I	GTAC	2 cut(s)	844, 952
CviAII	CATG	1 cut(s)	502
CviQI	GTAC	2 cut(s)	844, 952
DdeI	CTNAG	3 cut(s)	28, 198, 533
DpnI	GATC	4 cut(s)	711, 753, 773, 900
DpnII	GATC	4 cut(s)	709, 751, 771, 898
EaeI	YGGCCR	2 cut(s)	422, 714
Eam1104I	CTCTTC	5 cut(s)	223, 234, 246, 251, 434
EarI	CTCTTC	5 cut(s)	223, 234, 246, 251, 434
Eco105I	TACGTA	1 cut(s)	955
Eco147I	AGGCCT	1 cut(s)	792
Eco31I	GGTCTC	1 cut(s)	625
Eco47I	GGWCC	1 cut(s)	647
EcoRII	CCWGG	1 cut(s)	561
FaeI	CATG	1 cut(s)	505
FaiI	YATR	6 cut(s)	355, 467, 503, 723, 788, 827
FaqI	GGGAC	1 cut(s)	660
FatI	CATG	1 cut(s)	501
FauI	CCCGC	1 cut(s)	833
Fnu4HI	GCNGC	8 cut(s)	172, 527, 598, 732, 784, 798, 801, 810
FokI	GGATG	2 cut(s)	356, 406
Fsp4HI	GCNGC	8 cut(s)	172, 527, 598, 732, 784, 798, 801, 810
FspBI	CTAG	1 cut(s)	961
GluI	GCNGC	8 cut(s)	172, 527, 598, 732, 784, 798, 801, 810
GsaI	CCCAGC	1 cut(s)	647
HaeIII	GGCC	4 cut(s)	424, 506, 716, 792
HapII	CCGG	3 cut(s)	539, 713, 905
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	505
HinfI	GANTC	1 cut(s)	927
HpaII	CCGG	3 cut(s)	539, 713, 905
Hpy166II	GTNNAC	1 cut(s)	846
Hpy188I	TCNGA	3 cut(s)	199, 438, 867
Hpy188III	TCNNGA	2 cut(s)	370, 670
Hpy8I	GTNNAC	1 cut(s)	846
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	5 cut(s)	243, 274, 607, 765, 950
HpyCH4III	ACNGT	2 cut(s)	126, 160
HpyCH4IV	ACGT	1 cut(s)	954
HpyCH4V	TGCA	7 cut(s)	478, 548, 597, 626, 680, 797, 872
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 467, 623, 789, 806, 809
HpyF3I	CTNAG	3 cut(s)	28, 198, 533
HpySE526I	ACGT	1 cut(s)	954
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	505
Kzo9I	GATC	4 cut(s)	709, 751, 771, 898
LguI	GCTCTTC	1 cut(s)	246
LmnI	GCTCC	2 cut(s)	439, 910
Lsp1109I	GCAGC	5 cut(s)	513, 609, 787, 809, 821
LweI	GCATC	1 cut(s)	865
MaeI	CTAG	1 cut(s)	961
MaeII	ACGT	1 cut(s)	954
MaeIII	GTNAC	3 cut(s)	202, 334, 829
MalI	GATC	4 cut(s)	711, 753, 773, 900
MboI	GATC	4 cut(s)	709, 751, 771, 898
MflI	RGATCY	1 cut(s)	898
MhlI	GDGCHC	2 cut(s)	134, 291
MlsI	TGGCCA	1 cut(s)	424
MluNI	TGGCCA	1 cut(s)	424
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	9 cut(s)	88, 101, 193, 226, 371, 540, 705, 769, 901
Mox20I	TGGCCA	1 cut(s)	424
MroXI	GAANNNNTTC	1 cut(s)	861
MscI	TGGCCA	1 cut(s)	424
MseI	TTAA	2 cut(s)	408, 582
Msp20I	TGGCCA	1 cut(s)	424
MspA1I	CMGCKG	2 cut(s)	783, 800
MspI	CCGG	3 cut(s)	539, 713, 905
MspR9I	CCNGG	3 cut(s)	540, 563, 905
Mva1269I	GAATGC	2 cut(s)	461, 874
MvaI	CCWGG	1 cut(s)	563
MwoI	GCNNNNNNNGC	6 cut(s)	11, 467, 623, 789, 806, 809
NciI	CCSGG	2 cut(s)	540, 905
NdeII	GATC	4 cut(s)	709, 751, 771, 898
NlaIII	CATG	1 cut(s)	505
NlaIV	GGNNCC	3 cut(s)	162, 290, 648
NmuCI	GTSAC	1 cut(s)	202
PceI	AGGCCT	1 cut(s)	792
PciSI	GCTCTTC	1 cut(s)	246
PctI	GAATGC	2 cut(s)	461, 874
PdmI	GAANNNNTTC	1 cut(s)	861
PfeI	GAWTC	1 cut(s)	927
PflMI	CCANNNNNTGG	1 cut(s)	568
PkrI	GCNGC	8 cut(s)	173, 528, 599, 733, 785, 799, 802, 811
Ppu21I	YACGTR	1 cut(s)	955
Psp6I	CCWGG	1 cut(s)	561
PspFI	CCCAGC	1 cut(s)	643
PspGI	CCWGG	1 cut(s)	561
PspN4I	GGNNCC	3 cut(s)	162, 290, 648
PspPI	GGNCC	2 cut(s)	505, 647
PsuI	RGATCY	1 cut(s)	898
PvuII	CAGCTG	1 cut(s)	800
RsaI	GTAC	2 cut(s)	845, 953
RsaNI	GTAC	2 cut(s)	844, 952
SapI	GCTCTTC	1 cut(s)	246
SaqAI	TTAA	2 cut(s)	408, 582
SatI	GCNGC	8 cut(s)	172, 527, 598, 732, 784, 798, 801, 810
Sau3AI	GATC	4 cut(s)	709, 751, 771, 898
Sau96I	GGNCC	2 cut(s)	505, 647
ScrFI	CCNGG	3 cut(s)	540, 563, 905
SduI	GDGCHC	2 cut(s)	134, 291
SfaNI	GCATC	1 cut(s)	865
SfcI	CTRYAG	1 cut(s)	931
SinI	GGWCC	1 cut(s)	647
SmlI	CTYRAG	2 cut(s)	368, 944
SmoI	CTYRAG	2 cut(s)	368, 944
SnaBI	TACGTA	1 cut(s)	955
SseBI	AGGCCT	1 cut(s)	792
SsiI	CCGC	7 cut(s)	171, 292, 617, 731, 783, 840, 878
SspMI	CTAG	1 cut(s)	961
StuI	AGGCCT	1 cut(s)	792
StyD4I	CCNGG	3 cut(s)	538, 561, 903
TaaI	ACNGT	2 cut(s)	126, 160
TaiI	ACGT	1 cut(s)	957
TaqI	TCGA	7 cut(s)	8, 191, 249, 270, 348, 758, 774
TauI	GCSGC	3 cut(s)	174, 734, 786
TfiI	GAWTC	1 cut(s)	927
Tru1I	TTAA	2 cut(s)	408, 582
Tru9I	TTAA	2 cut(s)	408, 582
TscAI	CASTG	2 cut(s)	129, 480
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	5 cut(s)	526, 597, 797, 800, 809
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	5 cut(s)	454, 490, 624, 833, 880
TspGWI	ACGGA	2 cut(s)	506, 591
TspRI	CASTG	2 cut(s)	129, 480
Van91I	CCANNNNNTGG	1 cut(s)	568
VpaK11BI	GGWCC	1 cut(s)	647
XcmI	CCANNNNNNNNNTGG	1 cut(s)	724
XmnI	GAANNNNTTC	1 cut(s)	861
XspI	CTAG	1 cut(s)	961

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.