Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0011244

Physical Location & Seq

Genomic Coordinates Reverse (-)

4164526 .. 4168762

Gene Structure 4237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g07070.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCTACAATGGCCTTTGGTCTTTCCTCAGCTACATTATCTTGTACCAACTCTTTACTATCTCATAAAAATACCACCTTTATTTCCAGCCTCAAATCCCATCAGAGGACATTGCCATGTTCTCTATTGGGCACAAAAGTTTTTATTAGCAAAACAGAGAGACCAGTGGTAATAAGAACATGTCATTCTCAGATCACTTGCTCAGCTTCTTCTTCGACTCTCCCAGCGGCTCTACTGTTTGACTGTGACGGCGTTCTTGTCGATACGGAGAAAGATGGGCACCGCATTTCCTTCAATGATACTTTCAAGGAGAAAGAATTGGGTGTAACTTGGCATGTAGATTTGTATGGAGAGTTGCTCAAGATTGGAGGTGGAAAAGAAAGGATGACTGCCTATTTTAACAAGACGGGTTGGCCGGAAAAAGCTCCCAAGAGTGAGGAAGAGAGAAAAGCATTCATAGCTGGACTTCACAAGCGAAAGACGGAATTGTTCATGGCCCTCATTGAGAAAAAGTTGCTGCCTCTTCGTCCAGGCGTTGCAAAGTTGATAGATCAGGCTTTAGCAGAAGGAGTTAAAGTTGCTGTGTGCAGCACTTCAAACGAGAAGGCGGTATCTGCAATAGTTTCTTTCTTGCTGGGACCAGAAAGGGCAGAGAAAATCCAGATATTCGCAGGAGATGTGGTTCCCCGAAAGAAGCCTGATCCAGCCATCTATGAATTGGCGGCTAAGACGCTGAGTGTTGATCCTTCAAGTTGTGTTGTGATAGAAGACAGCGGCATAGGCCTTGCAGCTGCAAAAGCTGCTGGAATGAAGTGTATAGTAACCAAGAGCGGATACACAGCCGATGAAGACTTTCAGAATGCAGATGCTGTCTTCGACTTCATCGGAGATCCCCCAGAGGAGCGGTTCGACTTGGCATTCTGCAGAAGCCTTCTGAAGCAGTATGTGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

318

Amino Acids

34.44

Weight (kDa)

8.0

Isoelectric Point (pI)

35.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	77 - 252	9.4e-18	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	79 - 251	1.8e-09	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48420
fragaria_vesca	FvH4_5g07070 FvH4_5g07070 FvH4_5g07070
malus_domestica	MD06G1160600.v1.1 MD14G1165800.v1.1
prunus_persica	Prupe.5G159700_v2.0.a1 Prupe.5G159800_v2.0.a1
pyrus_communis	pycom06g14360 pycom14g13840
rosa_chinensis	RchiOBHm_Chr7g0191481
rosa_laevigata	RLG00000004445
rosa_multiflora	Rmu_sc0002661.1_g000011
rosa_roxburghii	Rroxscaffold_157G00438420 Rroxscaffold_3G00263760
rosa_rugosa	Rorug06G0510500
rosa_samantha	Rh7AG118700 Rh7BG120700 Rh7CG123500 Rh7DG121600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	279
AccBSI	CCGCTC	2 cut(s)	831, 904
AciI	CCGC	7 cut(s)	227, 283, 608, 722, 774, 831, 904
AclWI	GGATC	3 cut(s)	695, 737, 884
AcoI	YGGCCR	1 cut(s)	413
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	1 cut(s)	105
AflIII	ACRYGT	1 cut(s)	179
AgsI	TTSAA	4 cut(s)	295, 307, 597, 750
AjnI	CCWGG	1 cut(s)	529
AloI	GAACNNNNNNTCC	2 cut(s)	666, 698
AluBI	AGCT	7 cut(s)	32, 206, 425, 461, 791, 800, 951
AluI	AGCT	7 cut(s)	32, 206, 425, 461, 791, 800, 951
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	3 cut(s)	695, 737, 884
AlwNI	CAGNNNCTG	1 cut(s)	869
AoxI	GGCC	4 cut(s)	12, 413, 495, 781
ApeKI	GCWGC	5 cut(s)	517, 588, 788, 791, 800
Asp700I	GAANNNNTTC	1 cut(s)	852
AspS9I	GGNCC	2 cut(s)	496, 638
AvaII	GGWCC	1 cut(s)	638
BaeGI	GKGCMC	2 cut(s)	134, 282
BanI	GGYRCC	1 cut(s)	279
BbsI	GAAGAC	3 cut(s)	774, 855, 865
BbvCI	CCTCAGC	1 cut(s)	28
BbvI	GCAGC	5 cut(s)	504, 600, 778, 787, 800
BccI	CCATC	3 cut(s)	108, 269, 716
BceAI	ACGGC	1 cut(s)	265
BciT130I	CCWGG	1 cut(s)	531
BciVI	GTATCC	1 cut(s)	827
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	1 cut(s)	952
BfmI	CTRYAG	1 cut(s)	922
BfuI	GTATCC	1 cut(s)	827
BisI	GCNGC	8 cut(s)	228, 518, 589, 723, 775, 789, 792, 801
BlpI	GCTNAGC	1 cut(s)	202
BlsI	GCNGC	8 cut(s)	229, 519, 590, 724, 776, 790, 793, 802
Bme1390I	CCNGG	1 cut(s)	531
Bme18I	GGWCC	1 cut(s)	638
BmgT120I	GGNCC	2 cut(s)	496, 638
BmiI	GGNNCC	3 cut(s)	281, 639, 684
BmrFI	CCNGG	1 cut(s)	531
BmsI	GCATC	1 cut(s)	856
BpiI	GAAGAC	3 cut(s)	774, 855, 865
BplI	GAGNNNNNCTC	2 cut(s)	342, 374
Bpu10I	CCTNAGC	1 cut(s)	28
Bpu1102I	GCTNAGC	1 cut(s)	202
BpuEI	CTTGAG	1 cut(s)	344
BsaI	GGTCTC	1 cut(s)	154
BsaXI	ACNNNNNCTCC	4 cut(s)	561, 591, 666, 696
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse1I	ACTGG	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	110
BseBI	CCWGG	1 cut(s)	531
BseGI	GGATG	1 cut(s)	390
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMI	GCAATG	1 cut(s)	110
BseMII	CTCAG	4 cut(s)	42, 203, 216, 725
BseNI	ACTGG	1 cut(s)	164
BseRI	GAGGAG	1 cut(s)	914
BseSI	GKGCMC	2 cut(s)	134, 282
BseXI	GCAGC	5 cut(s)	504, 600, 778, 787, 800
BseYI	CCCAGC	2 cut(s)	223, 634
BsgI	GTGCAG	1 cut(s)	607
BshFI	GGCC	4 cut(s)	14, 415, 497, 783
BshNI	GGYRCC	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	416
BslFI	GGGAC	1 cut(s)	651
BslI	CCNNNNNNNGG	1 cut(s)	105
BsmAI	GTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	651
BsmI	GAATGC	3 cut(s)	452, 865, 917
BsnI	GGCC	4 cut(s)	14, 415, 497, 783
Bso31I	GGTCTC	1 cut(s)	154
Bsp1286I	GDGCHC	2 cut(s)	134, 282
Bsp143I	GATC	5 cut(s)	192, 550, 700, 742, 889
Bsp1720I	GCTNAGC	1 cut(s)	202
BspACI	CCGC	7 cut(s)	227, 283, 608, 722, 774, 831, 904
BspANI	GGCC	4 cut(s)	14, 415, 497, 783
BspCNI	CTCAG	4 cut(s)	41, 202, 215, 726
BspLI	GGNNCC	3 cut(s)	281, 639, 684
BspMAI	CTGCAG	1 cut(s)	926
BspPI	GGATC	3 cut(s)	695, 737, 884
BspT107I	GGYRCC	1 cut(s)	279
BspTNI	GGTCTC	1 cut(s)	154
BsrBI	CCGCTC	2 cut(s)	831, 904
BsrDI	GCAATG	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	164
BssMI	GATC	5 cut(s)	192, 550, 700, 742, 889
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	2 cut(s)	237, 245
Bst6I	CTCTTC	2 cut(s)	435, 528
BstAPI	GCANNNNNTGC	1 cut(s)	800
BstDEI	CTNAG	5 cut(s)	28, 189, 202, 726, 734
BstF5I	GGATG	1 cut(s)	390
BstKTI	GATC	5 cut(s)	195, 553, 703, 745, 892
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	5 cut(s)	192, 550, 700, 742, 889
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 458, 614, 780, 797, 800
BstNI	CCWGG	1 cut(s)	531
BstNSI	RCATGY	2 cut(s)	183, 338
BstSCI	CCNGG	1 cut(s)	529
BstSFI	CTRYAG	1 cut(s)	922
BstSLI	GKGCMC	2 cut(s)	134, 282
BstV1I	GCAGC	5 cut(s)	504, 600, 778, 787, 800
BstV2I	GAAGAC	3 cut(s)	774, 855, 865
BstX2I	RGATCY	1 cut(s)	889
BstYI	RGATCY	1 cut(s)	889
BsuI	GTATCC	1 cut(s)	827
BsuRI	GGCC	4 cut(s)	14, 415, 497, 783
BtsCI	GGATG	1 cut(s)	390
BtsIMutI	CAGTG	1 cut(s)	171
CaiI	CAGNNNCTG	1 cut(s)	869
Cfr13I	GGNCC	2 cut(s)	496, 638
CseI	GACGC	1 cut(s)	739
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	4 cut(s)	117, 180, 335, 493
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	5 cut(s)	28, 189, 202, 726, 734
DpnI	GATC	5 cut(s)	194, 552, 702, 744, 891
DpnII	GATC	5 cut(s)	192, 550, 700, 742, 889
EaeI	YGGCCR	1 cut(s)	413
Eam1104I	CTCTTC	2 cut(s)	435, 528
EarI	CTCTTC	2 cut(s)	435, 528
Eco147I	AGGCCT	1 cut(s)	783
Eco31I	GGTCTC	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	638
EcoRII	CCWGG	1 cut(s)	529
FaeI	CATG	4 cut(s)	120, 183, 338, 496
FaqI	GGGAC	1 cut(s)	651
FatI	CATG	4 cut(s)	116, 179, 334, 492
Fnu4HI	GCNGC	8 cut(s)	228, 518, 589, 723, 775, 789, 792, 801
FokI	GGATG	1 cut(s)	397
Fsp4HI	GCNGC	8 cut(s)	228, 518, 589, 723, 775, 789, 792, 801
FspBI	CTAG	1 cut(s)	952
GluI	GCNGC	8 cut(s)	228, 518, 589, 723, 775, 789, 792, 801
GsaI	CCCAGC	2 cut(s)	227, 638
HaeIII	GGCC	4 cut(s)	14, 415, 497, 783
HapII	CCGG	1 cut(s)	416
HgaI	GACGC	1 cut(s)	739
Hin1II	CATG	4 cut(s)	120, 183, 338, 496
HinfI	GANTC	1 cut(s)	217
HpaII	CCGG	1 cut(s)	416
Hpy188I	TCNGA	5 cut(s)	105, 192, 858, 887, 936
Hpy188III	TCNNGA	2 cut(s)	361, 661
HpyAV	CCTTC	5 cut(s)	301, 560, 598, 756, 941
HpyCH4III	ACNGT	2 cut(s)	237, 245
HpyCH4V	TGCA	7 cut(s)	539, 588, 617, 788, 794, 863, 924
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 458, 614, 780, 797, 800
HpyF3I	CTNAG	5 cut(s)	28, 189, 202, 726, 734
Hsp92II	CATG	4 cut(s)	120, 183, 338, 496
Kzo9I	GATC	5 cut(s)	192, 550, 700, 742, 889
LmnI	GCTCC	2 cut(s)	430, 901
Lsp1109I	GCAGC	5 cut(s)	504, 600, 778, 787, 800
LweI	GCATC	1 cut(s)	856
MaeI	CTAG	1 cut(s)	952
MaeIII	GTNAC	3 cut(s)	245, 325, 820
MalI	GATC	5 cut(s)	194, 552, 702, 744, 891
MbiI	CCGCTC	2 cut(s)	831, 904
MboI	GATC	5 cut(s)	192, 550, 700, 742, 889
MboII	GAAGA	7 cut(s)	201, 204, 452, 515, 779, 860, 865
MflI	RGATCY	1 cut(s)	889
MhlI	GDGCHC	2 cut(s)	134, 282
MluCI	AATT	3 cut(s)	317, 485, 716
MlyI	GAGTC	1 cut(s)	211
MnlI	CCTC	8 cut(s)	37, 99, 101, 362, 430, 509, 531, 892
MroXI	GAANNNNTTC	1 cut(s)	852
MseI	TTAA	2 cut(s)	399, 573
MslI	CAYNNNNRTG	1 cut(s)	115
MspA1I	CMGCKG	3 cut(s)	227, 774, 791
MspI	CCGG	1 cut(s)	416
MspR9I	CCNGG	1 cut(s)	531
Mva1269I	GAATGC	3 cut(s)	452, 865, 917
MvaI	CCWGG	1 cut(s)	531
MwoI	GCNNNNNNNGC	6 cut(s)	11, 458, 614, 780, 797, 800
NdeII	GATC	5 cut(s)	192, 550, 700, 742, 889
NlaIII	CATG	4 cut(s)	120, 183, 338, 496
NlaIV	GGNNCC	3 cut(s)	281, 639, 684
NmuCI	GTSAC	1 cut(s)	245
NspI	RCATGY	2 cut(s)	183, 338
PceI	AGGCCT	1 cut(s)	783
PciI	ACATGT	1 cut(s)	179
PctI	GAATGC	3 cut(s)	452, 865, 917
PdmI	GAANNNNTTC	1 cut(s)	852
PkrI	GCNGC	8 cut(s)	229, 519, 590, 724, 776, 790, 793, 802
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
PscI	ACATGT	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	529
PspFI	CCCAGC	2 cut(s)	223, 634
PspGI	CCWGG	1 cut(s)	529
PspN4I	GGNNCC	3 cut(s)	281, 639, 684
PspPI	GGNCC	2 cut(s)	496, 638
PstI	CTGCAG	1 cut(s)	926
PstNI	CAGNNNCTG	1 cut(s)	869
PsuI	RGATCY	1 cut(s)	889
PvuII	CAGCTG	1 cut(s)	791
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
RseI	CAYNNNNRTG	1 cut(s)	115
SaqAI	TTAA	2 cut(s)	399, 573
SatI	GCNGC	8 cut(s)	228, 518, 589, 723, 775, 789, 792, 801
Sau3AI	GATC	5 cut(s)	192, 550, 700, 742, 889
Sau96I	GGNCC	2 cut(s)	496, 638
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	531
SduI	GDGCHC	2 cut(s)	134, 282
SetI	ASST	9 cut(s)	34, 80, 208, 373, 427, 463, 793, 802, 953
SfaNI	GCATC	1 cut(s)	856
SfcI	CTRYAG	1 cut(s)	922
SinI	GGWCC	1 cut(s)	638
SmiMI	CAYNNNNRTG	1 cut(s)	115
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	3 cut(s)	317, 485, 716
SseBI	AGGCCT	1 cut(s)	783
SsiI	CCGC	7 cut(s)	227, 283, 608, 722, 774, 831, 904
SspMI	CTAG	1 cut(s)	952
StuI	AGGCCT	1 cut(s)	783
StyD4I	CCNGG	1 cut(s)	529
TaaI	ACNGT	2 cut(s)	237, 245
TaqI	TCGA	4 cut(s)	215, 261, 876, 909
TasI	AATT	3 cut(s)	317, 485, 716
TauI	GCSGC	3 cut(s)	230, 725, 777
Tru1I	TTAA	2 cut(s)	399, 573
Tru9I	TTAA	2 cut(s)	399, 573
TscAI	CASTG	1 cut(s)	171
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	5 cut(s)	517, 588, 788, 791, 800
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	6 cut(s)	445, 481, 729, 824, 861, 871
TspGWI	ACGGA	2 cut(s)	281, 497
TspRI	CASTG	1 cut(s)	171
VpaK11BI	GGWCC	1 cut(s)	638
XceI	RCATGY	2 cut(s)	183, 338
XcmI	CCANNNNNNNNNTGG	1 cut(s)	715
XmnI	GAANNNNTTC	1 cut(s)	852
XspI	CTAG	1 cut(s)	952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.