Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0011244

Physical Location & Seq

Genomic Coordinates Forward (+)

9583394 .. 9588469

Gene Structure 5076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG123500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCGTCAATGGCCTTCGGTCTTTCCTTAGCTACATTATCTTCTACCAACCCTTCACAATCTCACAAAAAGACCACCTCCATTTCCAACCTCAAATCCCATCAAAGCACCTTACCGTCTTCTCTATTGGGCACAAAAGTTCTCTTTAGCAAGACACAGAGACCAATAATAAGGACATGTCATTCTCAGGTCACTTGTTCAGTTGCTTCTTCTTCTTCGACTCTCCCATCGGCTCTTCTATTTGACTGTGATGGCGTTCTTGTCGATACGGAGAAAGATGGGCACCGCATTTCTTTCAATGAAACTTTCAAAGAGAAAGAATTGGGTGTTACTTGGGATGTAGATTTGTATGGCGAATTGCTCAAGATTGGAGGTGGAAAAGAAAGGATGACTGCCTATTTTAACAAGACGGGTTGGCCGGAAAAAGCTCCAAAGAGCGAGGAAGAGAGAAAAGCATTCATAGCTTCACTGCACAAGCGAAAGACTGAATTGTTCATGGCCCTCATTGAGAAGAAGTTGCTGCCTCTTCGTCCGGGCGTTGCAAAGTTGATAGACCAGGCTTTAGCAGAAGGAGTTAAAGTTGCTGTGTGCAGCACTTCCAATGAGAAGGCGGTATCTGCAATAGTTTCTTTCTTGCTGGGACCAGAGCGGGCAGAGAAAATCCAGATATTTGCAGGAGATGTGGTTCCCCGAAAGAAGCCTGATCCAGCCATCTATGTATTGGCGGCTAACACGCTCAATGTTGATCCTTCAAGGTACTGCAGGAAAAGAAGGCCTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

260

Amino Acids

28.48

Weight (kDa)

9.51

Isoelectric Point (pI)

39.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	78 - 253	3.7e-19	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	80 - 252	7.2e-10	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48420
fragaria_vesca	FvH4_5g07070 FvH4_5g07070 FvH4_5g07070
malus_domestica	MD06G1160600.v1.1 MD14G1165800.v1.1
prunus_persica	Prupe.5G159700_v2.0.a1 Prupe.5G159800_v2.0.a1
pyrus_communis	pycom06g14360 pycom14g13840
rosa_chinensis	RchiOBHm_Chr7g0191481
rosa_laevigata	RLG00000004445
rosa_multiflora	Rmu_sc0002661.1_g000011
rosa_roxburghii	Rroxscaffold_157G00438420 Rroxscaffold_3G00263760
rosa_rugosa	Rorug06G0510500
rosa_samantha	Rh7AG118700 Rh7BG120700 Rh7CG123500 Rh7DG121600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	282
AccBSI	CCGCTC	1 cut(s)	649
AciI	CCGC	4 cut(s)	286, 611, 649, 725
AclWI	GGATC	2 cut(s)	698, 740
AcoI	YGGCCR	1 cut(s)	416
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	758
AflIII	ACRYGT	1 cut(s)	176
AgsI	TTSAA	3 cut(s)	298, 310, 753
AjnI	CCWGG	1 cut(s)	555
AloI	GAACNNNNNNTCC	2 cut(s)	669, 701
AluBI	AGCT	3 cut(s)	32, 428, 464
AluI	AGCT	3 cut(s)	32, 428, 464
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	2 cut(s)	698, 740
AoxI	GGCC	4 cut(s)	12, 416, 498, 773
ApeKI	GCWGC	2 cut(s)	520, 591
AspS9I	GGNCC	2 cut(s)	499, 641
AsuC2I	CCSGG	1 cut(s)	534
AvaII	GGWCC	1 cut(s)	641
BaeGI	GKGCMC	2 cut(s)	134, 285
BanI	GGYRCC	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	111
BbvI	GCAGC	2 cut(s)	507, 603
BccI	CCATC	5 cut(s)	108, 235, 245, 272, 719
BciT130I	CCWGG	1 cut(s)	557
BcnI	CCSGG	1 cut(s)	534
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	1 cut(s)	781
BfmI	CTRYAG	1 cut(s)	760
BisI	GCNGC	3 cut(s)	521, 592, 726
BlsI	GCNGC	3 cut(s)	522, 593, 727
Bme1390I	CCNGG	2 cut(s)	534, 557
Bme18I	GGWCC	1 cut(s)	641
BmgT120I	GGNCC	2 cut(s)	499, 641
BmiI	GGNNCC	3 cut(s)	284, 642, 687
BmrFI	CCNGG	2 cut(s)	534, 557
BpiI	GAAGAC	1 cut(s)	111
Bpu10I	CCTNAGC	1 cut(s)	28
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	1 cut(s)	534
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	154
BsaXI	ACNNNNNCTCC	4 cut(s)	564, 594, 669, 699
BseBI	CCWGG	1 cut(s)	557
BseGI	GGATG	2 cut(s)	343, 393
BseMII	CTCAG	1 cut(s)	200
BseSI	GKGCMC	2 cut(s)	134, 285
BseXI	GCAGC	2 cut(s)	507, 603
BseYI	CCCAGC	1 cut(s)	637
BsgI	GTGCAG	2 cut(s)	455, 610
BshFI	GGCC	4 cut(s)	14, 418, 500, 775
BshNI	GGYRCC	1 cut(s)	282
BsiSI	CCGG	2 cut(s)	419, 533
BslFI	GGGAC	1 cut(s)	654
BsmAI	GTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	654
BsmI	GAATGC	1 cut(s)	455
BsnI	GGCC	4 cut(s)	14, 418, 500, 775
Bso31I	GGTCTC	1 cut(s)	154
Bsp1286I	GDGCHC	2 cut(s)	134, 285
Bsp143I	GATC	2 cut(s)	703, 745
BspACI	CCGC	4 cut(s)	286, 611, 649, 725
BspANI	GGCC	4 cut(s)	14, 418, 500, 775
BspCNI	CTCAG	1 cut(s)	199
BspLI	GGNNCC	3 cut(s)	284, 642, 687
BspMAI	CTGCAG	1 cut(s)	764
BspPI	GGATC	2 cut(s)	698, 740
BspQI	GCTCTTC	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	282
BspTNI	GGTCTC	1 cut(s)	154
BsrBI	CCGCTC	1 cut(s)	649
BssMI	GATC	2 cut(s)	703, 745
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	557
Bst4CI	ACNGT	2 cut(s)	117, 248
Bst6I	CTCTTC	3 cut(s)	240, 438, 531
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	651
BstDEI	CTNAG	2 cut(s)	28, 186
BstF5I	GGATG	2 cut(s)	343, 393
BstKTI	GATC	2 cut(s)	706, 748
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	2 cut(s)	703, 745
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 461, 617
BstNI	CCWGG	1 cut(s)	557
BstNSI	RCATGY	1 cut(s)	180
BstSCI	CCNGG	2 cut(s)	532, 555
BstSFI	CTRYAG	1 cut(s)	760
BstSLI	GKGCMC	2 cut(s)	134, 285
BstV1I	GCAGC	2 cut(s)	507, 603
BstV2I	GAAGAC	1 cut(s)	111
BsuRI	GGCC	4 cut(s)	14, 418, 500, 775
BtsCI	GGATG	2 cut(s)	343, 393
BtsI	GCAGTG	1 cut(s)	467
BtsIMutI	CAGTG	1 cut(s)	467
Cac8I	GCNNGC	1 cut(s)	651
Cfr13I	GGNCC	2 cut(s)	499, 641
Csp6I	GTAC	1 cut(s)	757
CviAII	CATG	2 cut(s)	177, 496
CviQI	GTAC	1 cut(s)	757
DdeI	CTNAG	2 cut(s)	28, 186
DpnI	GATC	2 cut(s)	705, 747
DpnII	GATC	2 cut(s)	703, 745
EaeI	YGGCCR	1 cut(s)	416
Eam1104I	CTCTTC	3 cut(s)	240, 438, 531
EarI	CTCTTC	3 cut(s)	240, 438, 531
Eco147I	AGGCCT	1 cut(s)	775
Eco31I	GGTCTC	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	641
EcoRII	CCWGG	1 cut(s)	555
FaeI	CATG	2 cut(s)	180, 499
FaiI	YATR	5 cut(s)	178, 351, 461, 497, 717
FaqI	GGGAC	1 cut(s)	654
FatI	CATG	2 cut(s)	176, 495
FauI	CCCGC	1 cut(s)	642
Fnu4HI	GCNGC	3 cut(s)	521, 592, 726
FokI	GGATG	2 cut(s)	350, 400
Fsp4HI	GCNGC	3 cut(s)	521, 592, 726
FspBI	CTAG	1 cut(s)	781
GluI	GCNGC	3 cut(s)	521, 592, 726
GsaI	CCCAGC	1 cut(s)	641
HaeIII	GGCC	4 cut(s)	14, 418, 500, 775
HapII	CCGG	2 cut(s)	419, 533
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	180, 499
HinfI	GANTC	1 cut(s)	220
HpaII	CCGG	2 cut(s)	419, 533
Hpy188III	TCNNGA	2 cut(s)	364, 664
HpyAV	CCTTC	6 cut(s)	25, 63, 563, 601, 759, 765
HpyCH4III	ACNGT	2 cut(s)	117, 248
HpyCH4V	TGCA	6 cut(s)	472, 542, 591, 620, 674, 762
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 461, 617
HpyF3I	CTNAG	2 cut(s)	28, 186
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	180, 499
Kzo9I	GATC	2 cut(s)	703, 745
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	1 cut(s)	433
Lsp1109I	GCAGC	2 cut(s)	507, 603
MaeI	CTAG	1 cut(s)	781
MaeIII	GTNAC	2 cut(s)	190, 328
MalI	GATC	2 cut(s)	705, 747
MbiI	CCGCTC	1 cut(s)	649
MboI	GATC	2 cut(s)	703, 745
MboII	GAAGA	9 cut(s)	33, 111, 201, 204, 207, 227, 455, 518, 523
MhlI	GDGCHC	2 cut(s)	134, 285
MluCI	AATT	3 cut(s)	320, 356, 488
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	6 cut(s)	88, 101, 365, 433, 512, 534
MseI	TTAA	2 cut(s)	402, 576
MspI	CCGG	2 cut(s)	419, 533
MspR9I	CCNGG	2 cut(s)	534, 557
Mva1269I	GAATGC	1 cut(s)	455
MvaI	CCWGG	1 cut(s)	557
MwoI	GCNNNNNNNGC	3 cut(s)	11, 461, 617
NciI	CCSGG	1 cut(s)	534
NdeII	GATC	2 cut(s)	703, 745
NlaIII	CATG	2 cut(s)	180, 499
NlaIV	GGNNCC	3 cut(s)	284, 642, 687
NmuCI	GTSAC	1 cut(s)	190
NspI	RCATGY	1 cut(s)	180
PceI	AGGCCT	1 cut(s)	775
PciI	ACATGT	1 cut(s)	176
PciSI	GCTCTTC	1 cut(s)	240
PctI	GAATGC	1 cut(s)	455
PkrI	GCNGC	3 cut(s)	522, 593, 727
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PscI	ACATGT	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	555
PspFI	CCCAGC	1 cut(s)	637
PspGI	CCWGG	1 cut(s)	555
PspN4I	GGNNCC	3 cut(s)	284, 642, 687
PspPI	GGNCC	2 cut(s)	499, 641
PstI	CTGCAG	1 cut(s)	764
RsaI	GTAC	1 cut(s)	758
RsaNI	GTAC	1 cut(s)	757
SapI	GCTCTTC	1 cut(s)	240
SaqAI	TTAA	2 cut(s)	402, 576
SatI	GCNGC	3 cut(s)	521, 592, 726
Sau3AI	GATC	2 cut(s)	703, 745
Sau96I	GGNCC	2 cut(s)	499, 641
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	2 cut(s)	534, 557
SduI	GDGCHC	2 cut(s)	134, 285
SetI	ASST	9 cut(s)	34, 80, 93, 113, 192, 376, 430, 466, 758
SfcI	CTRYAG	1 cut(s)	760
SinI	GGWCC	1 cut(s)	641
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	3 cut(s)	320, 356, 488
SseBI	AGGCCT	1 cut(s)	775
SsiI	CCGC	4 cut(s)	286, 611, 649, 725
SspMI	CTAG	1 cut(s)	781
StuI	AGGCCT	1 cut(s)	775
StyD4I	CCNGG	2 cut(s)	532, 555
TaaI	ACNGT	2 cut(s)	117, 248
TaqI	TCGA	2 cut(s)	218, 264
TaqII	GACCGA	1 cut(s)	8
TasI	AATT	3 cut(s)	320, 356, 488
TauI	GCSGC	1 cut(s)	728
Tru1I	TTAA	2 cut(s)	402, 576
Tru9I	TTAA	2 cut(s)	402, 576
TscAI	CASTG	1 cut(s)	474
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	2 cut(s)	520, 591
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	3 cut(s)	315, 448, 484
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	1 cut(s)	474
VpaK11BI	GGWCC	1 cut(s)	641
XceI	RCATGY	1 cut(s)	180
XcmI	CCANNNNNNNNNTGG	1 cut(s)	718
XspI	CTAG	1 cut(s)	781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.