Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0011244

Physical Location & Seq

Genomic Coordinates Forward (+)

14119853 .. 14122486

Gene Structure 2634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G159700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCGTCAATGGCTGTCTGTTATTCCTTAGCTACATTATCTTCTACGCTACCTTTGCTATCTCACAAAAAGACCACCTCCATTGCCAACCTCAAATCCCATGGAAGGAACTTACAATCTTCACTAGTGGGTGCAAAACTAGCCATTAGCAAAACAACAAGACCATTGAGCAGCAGGAGGCTTGGAACATCTAGTTCTGAGGTCACTTGCTCAACTTCTGCTTCCCCTCTTCCTTCGGCTCTTCTCTTCGATTGCGATGGCGTGCTTGTCGATACAGAGAAGGATGGCCACCGCGTTTCTTATAATGAAACTTTCAAAGAGAAAGAATTGGGTGTTACTTGGGATGTAGATTTGTACGCAGAGTTGCTCAAGATTGGAGGTGGAAAAGAAAGGATGACAGCCTATTTTAACAAGACGGGTTGGCCCGAAAATGCTCCGAAGAGTGAAGAAGAAAGAAAAGCATTTGTAGCTTCACTTCACAAGAGAAAGACAGAGTTGTTTGCGGCCCTTATTGAGAAAAGGCTGCTGCCGCTTCGGCCAGGAGTTGTAAAGCTGATAGATCAGGCTCTAGCAGAAGGAGTTAAAGTTGCTGTGTGCAGCACTTCCGTTGAGAAGGCGGTCTCCGCAATAGTTACATTCTTGCTGGGACCAGAACGGGCAGAAAAAATCAAGATATTTGCAGGTGATGTGGTTGCCCGCAAGAAGCCTGATCCAGCCATCTATGTATTGGCGGCTAACACTCTTGGTGTTGATCCTTCAAGTTGTGTTGTGATAGAAGACAGCGGCATAGGCCTTGCAGCTGCCAAAGCGGCTGGAATGAAGTGTATAGTAACTAAGAGCGGATACACAGCCAATCAAGAATTTCCGACTGCAGATGCAGTCTTCGACTTCATTGGAGATCCCCCGGAGGAGCAATTCGACTTGGCATTTTGCGGAAGCCTTCTCAAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

318

Amino Acids

33.93

Weight (kDa)

8.36

Isoelectric Point (pI)

39.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48420
fragaria_vesca	FvH4_5g07070 FvH4_5g07070 FvH4_5g07070
malus_domestica	MD06G1160600.v1.1 MD14G1165800.v1.1
prunus_persica	Prupe.5G159700_v2.0.a1 Prupe.5G159800_v2.0.a1
pyrus_communis	pycom06g14360 pycom14g13840
rosa_chinensis	RchiOBHm_Chr7g0191481
rosa_laevigata	RLG00000004445
rosa_multiflora	Rmu_sc0002661.1_g000011
rosa_roxburghii	Rroxscaffold_157G00438420 Rroxscaffold_3G00263760
rosa_rugosa	Rorug06G0510500
rosa_samantha	Rh7AG118700 Rh7BG120700 Rh7CG123500 Rh7DG121600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	303
AarI	CACCTGC	1 cut(s)	671
Acc36I	ACCTGC	1 cut(s)	671
AccBSI	CCGCTC	1 cut(s)	840
AccII	CGCG	1 cut(s)	294
AclWI	GGATC	3 cut(s)	704, 746, 893
AcoI	YGGCCR	2 cut(s)	286, 536
AcsI	RAATTY	1 cut(s)	860
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	1 cut(s)	105
AgsI	TTSAA	2 cut(s)	316, 759
AhlI	ACTAGT	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	538
AluBI	AGCT	4 cut(s)	32, 470, 553, 800
AluI	AGCT	4 cut(s)	32, 470, 553, 800
Alw26I	GTCTC	1 cut(s)	625
AlwI	GGATC	3 cut(s)	704, 746, 893
AoxI	GGCC	5 cut(s)	286, 422, 504, 536, 790
ApeKI	GCWGC	6 cut(s)	171, 523, 526, 597, 797, 800
ApoI	RAATTY	1 cut(s)	860
AspS9I	GGNCC	3 cut(s)	423, 505, 647
AsuC2I	CCSGG	1 cut(s)	905
AsuHPI	GGTGA	1 cut(s)	695
AvaII	GGWCC	1 cut(s)	647
BalI	TGGCCA	1 cut(s)	288
BarI	GAAGNNNNNNTAC	2 cut(s)	459, 491
BbsI	GAAGAC	2 cut(s)	783, 874
BbvI	GCAGC	6 cut(s)	183, 510, 513, 609, 787, 809
BccI	CCATC	3 cut(s)	251, 278, 725
BciT130I	CCWGG	1 cut(s)	540
BciVI	GTATCC	1 cut(s)	836
BcnI	CCSGG	1 cut(s)	905
BcoDI	GTCTC	1 cut(s)	625
BcuI	ACTAGT	1 cut(s)	124
BfaI	CTAG	4 cut(s)	125, 140, 192, 569
BfmI	CTRYAG	1 cut(s)	870
BfuAI	ACCTGC	1 cut(s)	671
BfuI	GTATCC	1 cut(s)	836
BglI	GCCNNNNNGGC	2 cut(s)	535, 809
Bme1390I	CCNGG	2 cut(s)	540, 905
Bme18I	GGWCC	1 cut(s)	647
BmgT120I	GGNCC	3 cut(s)	423, 505, 647
BmiI	GGNNCC	1 cut(s)	648
BmrFI	CCNGG	2 cut(s)	540, 905
BmsI	GCATC	1 cut(s)	865
BpiI	GAAGAC	2 cut(s)	783, 874
Bpu10I	CCTNAGC	1 cut(s)	28
BpuEI	CTTGAG	2 cut(s)	353, 929
BpuMI	CCSGG	1 cut(s)	905
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	625
BsaJI	CCNNGG	2 cut(s)	100, 903
BsaXI	ACNNNNNCTCC	2 cut(s)	570, 600
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse3DI	GCAATG	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	2 cut(s)	100, 903
BseGI	GGATG	3 cut(s)	289, 349, 399
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	923
BseXI	GCAGC	6 cut(s)	183, 510, 513, 609, 787, 809
BseYI	CCCAGC	1 cut(s)	643
BsgI	GTGCAG	1 cut(s)	616
Bsh1236I	CGCG	1 cut(s)	294
BshFI	GGCC	5 cut(s)	288, 424, 506, 538, 792
BsiSI	CCGG	1 cut(s)	905
BslFI	GGGAC	1 cut(s)	660
BslI	CCNNNNNNNGG	1 cut(s)	105
BsmAI	GTCTC	1 cut(s)	625
BsmFI	GGGAC	1 cut(s)	660
BsnI	GGCC	5 cut(s)	288, 424, 506, 538, 792
Bso31I	GGTCTC	1 cut(s)	625
Bsp143I	GATC	4 cut(s)	559, 709, 751, 898
Bsp19I	CCATGG	1 cut(s)	100
BspANI	GGCC	5 cut(s)	288, 424, 506, 538, 792
BspCNI	CTCAG	1 cut(s)	190
BspFNI	CGCG	1 cut(s)	294
BspLI	GGNNCC	1 cut(s)	648
BspMAI	CTGCAG	1 cut(s)	874
BspMI	ACCTGC	1 cut(s)	671
BspPI	GGATC	3 cut(s)	704, 746, 893
BspQI	GCTCTTC	1 cut(s)	246
BspTNI	GGTCTC	1 cut(s)	625
BsrBI	CCGCTC	1 cut(s)	840
BsrDI	GCAATG	1 cut(s)	81
BssECI	CCNNGG	2 cut(s)	100, 903
BssMI	GATC	4 cut(s)	559, 709, 751, 898
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	540
Bst6I	CTCTTC	4 cut(s)	234, 246, 251, 434
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	263, 697
BstDEI	CTNAG	3 cut(s)	28, 198, 834
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	3 cut(s)	289, 349, 399
BstFNI	CGCG	1 cut(s)	294
BstKTI	GATC	4 cut(s)	562, 712, 754, 901
BstMAI	GTCTC	1 cut(s)	625
BstMBI	GATC	4 cut(s)	559, 709, 751, 898
BstNI	CCWGG	1 cut(s)	540
BstSCI	CCNGG	2 cut(s)	538, 903
BstSFI	CTRYAG	1 cut(s)	870
BstUI	CGCG	1 cut(s)	294
BstV1I	GCAGC	6 cut(s)	183, 510, 513, 609, 787, 809
BstV2I	GAAGAC	2 cut(s)	783, 874
BstX2I	RGATCY	1 cut(s)	898
BstYI	RGATCY	1 cut(s)	898
BsuI	GTATCC	1 cut(s)	836
BsuRI	GGCC	5 cut(s)	288, 424, 506, 538, 792
BtgI	CCRYGG	1 cut(s)	100
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	3 cut(s)	289, 349, 399
BveI	ACCTGC	1 cut(s)	671
Cac8I	GCNNGC	2 cut(s)	263, 697
Cfr13I	GGNCC	3 cut(s)	423, 505, 647
Csp6I	GTAC	1 cut(s)	355
CspCI	CAANNNNNGTGG	2 cut(s)	64, 99
CviAII	CATG	1 cut(s)	101
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	3 cut(s)	28, 198, 834
DpnI	GATC	4 cut(s)	561, 711, 753, 900
DpnII	GATC	4 cut(s)	559, 709, 751, 898
EaeI	YGGCCR	2 cut(s)	286, 536
Eam1104I	CTCTTC	4 cut(s)	234, 246, 251, 434
EarI	CTCTTC	4 cut(s)	234, 246, 251, 434
Eco130I	CCWWGG	1 cut(s)	100
Eco147I	AGGCCT	1 cut(s)	792
Eco31I	GGTCTC	1 cut(s)	625
Eco47I	GGWCC	1 cut(s)	647
EcoRII	CCWGG	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	1 cut(s)	104
FaiI	YATR	5 cut(s)	102, 303, 723, 788, 827
FaqI	GGGAC	1 cut(s)	660
FatI	CATG	1 cut(s)	100
FauI	CCCGC	1 cut(s)	704
FokI	GGATG	3 cut(s)	296, 356, 406
FspBI	CTAG	4 cut(s)	125, 140, 192, 569
GsaI	CCCAGC	1 cut(s)	647
HaeIII	GGCC	5 cut(s)	288, 424, 506, 538, 792
HapII	CCGG	1 cut(s)	905
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	104
HpaII	CCGG	1 cut(s)	905
HphI	GGTGA	1 cut(s)	695
Hpy188I	TCNGA	3 cut(s)	199, 438, 867
Hpy188III	TCNNGA	3 cut(s)	370, 670, 857
HpyAV	CCTTC	7 cut(s)	99, 243, 274, 569, 607, 765, 950
HpyCH4V	TGCA	6 cut(s)	134, 597, 680, 797, 872, 878
HpyF3I	CTNAG	3 cut(s)	28, 198, 834
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	104
Kzo9I	GATC	4 cut(s)	559, 709, 751, 898
LguI	GCTCTTC	1 cut(s)	246
LmnI	GCTCC	2 cut(s)	439, 910
Lsp1109I	GCAGC	6 cut(s)	183, 510, 513, 609, 787, 809
LweI	GCATC	1 cut(s)	865
MaeI	CTAG	4 cut(s)	125, 140, 192, 569
MaeIII	GTNAC	4 cut(s)	202, 334, 631, 829
MalI	GATC	4 cut(s)	561, 711, 753, 900
MbiI	CCGCTC	1 cut(s)	840
MboI	GATC	4 cut(s)	559, 709, 751, 898
MflI	RGATCY	1 cut(s)	898
MlsI	TGGCCA	1 cut(s)	288
MluCI	AATT	3 cut(s)	326, 860, 914
MluNI	TGGCCA	1 cut(s)	288
MmeI	TCCRAC	1 cut(s)	890
MnlI	CCTC	7 cut(s)	88, 101, 171, 193, 237, 371, 901
Mox20I	TGGCCA	1 cut(s)	288
MscI	TGGCCA	1 cut(s)	288
MseI	TTAA	2 cut(s)	408, 582
Msp20I	TGGCCA	1 cut(s)	288
MspA1I	CMGCKG	2 cut(s)	783, 800
MspI	CCGG	1 cut(s)	905
MspR9I	CCNGG	2 cut(s)	540, 905
MvaI	CCWGG	1 cut(s)	540
MvnI	CGCG	1 cut(s)	294
NciI	CCSGG	1 cut(s)	905
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	4 cut(s)	559, 709, 751, 898
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	1 cut(s)	648
NmuCI	GTSAC	1 cut(s)	202
PaqCI	CACCTGC	1 cut(s)	671
PceI	AGGCCT	1 cut(s)	792
PciSI	GCTCTTC	1 cut(s)	246
PsiI	TTATAA	1 cut(s)	303
Psp6I	CCWGG	1 cut(s)	538
PspFI	CCCAGC	1 cut(s)	643
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	1 cut(s)	648
PspPI	GGNCC	3 cut(s)	423, 505, 647
PstI	CTGCAG	1 cut(s)	874
PsuI	RGATCY	1 cut(s)	898
PvuII	CAGCTG	1 cut(s)	800
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SapI	GCTCTTC	1 cut(s)	246
SaqAI	TTAA	2 cut(s)	408, 582
Sau3AI	GATC	4 cut(s)	559, 709, 751, 898
Sau96I	GGNCC	3 cut(s)	423, 505, 647
ScrFI	CCNGG	2 cut(s)	540, 905
SfaNI	GCATC	1 cut(s)	865
SfcI	CTRYAG	1 cut(s)	870
SinI	GGWCC	1 cut(s)	647
SmlI	CTYRAG	2 cut(s)	368, 944
SmoI	CTYRAG	2 cut(s)	368, 944
SpeI	ACTAGT	1 cut(s)	124
Sse9I	AATT	3 cut(s)	326, 860, 914
SseBI	AGGCCT	1 cut(s)	792
SspMI	CTAG	4 cut(s)	125, 140, 192, 569
StuI	AGGCCT	1 cut(s)	792
StyD4I	CCNGG	2 cut(s)	538, 903
StyI	CCWWGG	1 cut(s)	100
TaqI	TCGA	4 cut(s)	249, 270, 885, 918
TasI	AATT	3 cut(s)	326, 860, 914
TauI	GCSGC	5 cut(s)	506, 532, 734, 786, 812
Tru1I	TTAA	2 cut(s)	408, 582
Tru9I	TTAA	2 cut(s)	408, 582
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	6 cut(s)	171, 523, 526, 597, 797, 800
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	3 cut(s)	321, 833, 880
TspGWI	ACGGA	1 cut(s)	595
VpaK11BI	GGWCC	1 cut(s)	647
XapI	RAATTY	1 cut(s)	860
XcmI	CCANNNNNNNNNTGG	1 cut(s)	724
XspI	CTAG	4 cut(s)	125, 140, 192, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.