Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011244

Physical Location & Seq

Genomic Coordinates Forward (+)

10241995 .. 10245553

Gene Structure 3559 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17111

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCGTCAATGGCCTTCGGTCTTTCCTTAGCTACATTATCTTCTACCAACCCTTTACATTCTCACAAAAAGACCACCTCCATTTCCAACCTCAAATCCCATCAAAGCACCTTACCATCTTCTCTATTGGGCACAAAAGTTCTCATTAGCAAGACACAGAGACCAATAATAAGAACACGTCATTCTCAGGTCACTTGTTCAGTTGCTTCTTCTTCTTCGACTCTCCCATCGGCTCTTCTATTTGACTGTGATGGCGTTCTTGTCGATACGGAGAAAGATGGGCACCGCATTTCTTTCAATGAAACTTTCAAAGAGAAAGAATTGGGGGTTACTTGGGATGTAGATTTGTATGGCGAATTGCTCAAGATTGGAGGTGGAAAAGAAAGGATGACTGCCTATTTTAACAAGACGGGTTGGCCGGAAAAAGCTCCAAAGAGCGAGGAAGAGAGAAAAGCATTCATAGCTTCACTGCACAAGCGAAAGACTGAATTGTTCATGGCCCTCATTGAGAAGAAGTTGCTGCCTCTTCGTCCGGGCGTTGCAAAGTTGATAGACCAGGCTTTAGCAGAAGGAGTTAAAGTTGCTGTGTGCAGCACTTCCAATGAGAAGGCGGTATCTGCAATAGTTTCTTTCTTGCTGGGACCAGAGCGGGCAGAGAAAATCCAGATATTTGCAGGAGATGTGGTTCCCCGAAAGAAGCCTGATCCAGCCATCTATGTATTGGCGGCTAACACGCTCAATGTTGATCCTTCAAGTTGTGTTGTGGTAGAGGACAGTGGCATAGGCCTTGCAGCTGCCAAAGCTGCTGGAATGAAGTGTATAGTAACCAAGAGCGGATACACAGCCGATGAAGACTTTCAGAATGCAGATGCTGTCTTTGACTTCATAGGAGATCCCCCAGAGGAGCAGTTCGACTTGGCATTCTGCAGAAGCCTTCTCAAGCAGTATGTGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

318

Amino Acids

34.45

Weight (kDa)

8.12

Isoelectric Point (pI)

32.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	78 - 270	4.7e-26	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	80 - 275	1.4e-17	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	232 - 291	7.2e-08	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48420
fragaria_vesca	FvH4_5g07070 FvH4_5g07070 FvH4_5g07070
malus_domestica	MD06G1160600.v1.1 MD14G1165800.v1.1
prunus_persica	Prupe.5G159700_v2.0.a1 Prupe.5G159800_v2.0.a1
pyrus_communis	pycom06g14360 pycom14g13840
rosa_chinensis	RchiOBHm_Chr7g0191481
rosa_laevigata	RLG00000004445
rosa_multiflora	Rmu_sc0002661.1_g000011
rosa_roxburghii	Rroxscaffold_157G00438420 Rroxscaffold_3G00263760
rosa_rugosa	Rorug06G0510500
rosa_samantha	Rh7AG118700 Rh7BG120700 Rh7CG123500 Rh7DG121600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	282
AccBSI	CCGCTC	2 cut(s)	649, 834
AciI	CCGC	5 cut(s)	286, 611, 649, 725, 834
AclWI	GGATC	3 cut(s)	698, 740, 887
AcoI	YGGCCR	1 cut(s)	416
AcyI	GRCGYC	1 cut(s)	5
AflIII	ACRYGT	1 cut(s)	176
AgsI	TTSAA	3 cut(s)	298, 310, 753
AjiI	CACGTC	1 cut(s)	179
AjnI	CCWGG	1 cut(s)	555
AloI	GAACNNNNNNTCC	2 cut(s)	669, 701
AluBI	AGCT	6 cut(s)	32, 428, 464, 794, 803, 954
AluI	AGCT	6 cut(s)	32, 428, 464, 794, 803, 954
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	3 cut(s)	698, 740, 887
AlwNI	CAGNNNCTG	1 cut(s)	872
AoxI	GGCC	4 cut(s)	12, 416, 498, 784
ApeKI	GCWGC	5 cut(s)	520, 591, 791, 794, 803
Asp700I	GAANNNNTTC	1 cut(s)	855
AspS9I	GGNCC	2 cut(s)	499, 641
AsuC2I	CCSGG	1 cut(s)	534
AvaII	GGWCC	1 cut(s)	641
BaeGI	GKGCMC	2 cut(s)	134, 285
BanI	GGYRCC	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	858
BbvI	GCAGC	5 cut(s)	507, 603, 781, 790, 803
BccI	CCATC	6 cut(s)	108, 124, 235, 245, 272, 719
BciT130I	CCWGG	1 cut(s)	557
BciVI	GTATCC	1 cut(s)	830
BcnI	CCSGG	1 cut(s)	534
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	1 cut(s)	955
BfmI	CTRYAG	1 cut(s)	925
BfuI	GTATCC	1 cut(s)	830
BisI	GCNGC	6 cut(s)	521, 592, 726, 792, 795, 804
BlsI	GCNGC	6 cut(s)	522, 593, 727, 793, 796, 805
Bme1390I	CCNGG	2 cut(s)	534, 557
Bme18I	GGWCC	1 cut(s)	641
BmgBI	CACGTC	1 cut(s)	179
BmgT120I	GGNCC	2 cut(s)	499, 641
BmiI	GGNNCC	3 cut(s)	284, 642, 687
BmrFI	CCNGG	2 cut(s)	534, 557
BmsI	GCATC	1 cut(s)	859
BpiI	GAAGAC	1 cut(s)	858
Bpu10I	CCTNAGC	1 cut(s)	28
BpuEI	CTTGAG	2 cut(s)	347, 923
BpuMI	CCSGG	1 cut(s)	534
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	154
BsaXI	ACNNNNNCTCC	4 cut(s)	564, 594, 669, 699
BseBI	CCWGG	1 cut(s)	557
BseGI	GGATG	2 cut(s)	343, 393
BseMII	CTCAG	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	917
BseSI	GKGCMC	2 cut(s)	134, 285
BseXI	GCAGC	5 cut(s)	507, 603, 781, 790, 803
BseYI	CCCAGC	1 cut(s)	637
BsgI	GTGCAG	2 cut(s)	455, 610
BshFI	GGCC	4 cut(s)	14, 418, 500, 786
BshNI	GGYRCC	1 cut(s)	282
BsiSI	CCGG	2 cut(s)	419, 533
BslFI	GGGAC	1 cut(s)	654
BsmAI	GTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	654
BsmI	GAATGC	3 cut(s)	455, 868, 920
BsnI	GGCC	4 cut(s)	14, 418, 500, 786
Bso31I	GGTCTC	1 cut(s)	154
Bsp1286I	GDGCHC	2 cut(s)	134, 285
Bsp143I	GATC	3 cut(s)	703, 745, 892
BspACI	CCGC	5 cut(s)	286, 611, 649, 725, 834
BspANI	GGCC	4 cut(s)	14, 418, 500, 786
BspCNI	CTCAG	1 cut(s)	199
BspLI	GGNNCC	3 cut(s)	284, 642, 687
BspMAI	CTGCAG	1 cut(s)	929
BspPI	GGATC	3 cut(s)	698, 740, 887
BspQI	GCTCTTC	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	282
BspTNI	GGTCTC	1 cut(s)	154
BsrBI	CCGCTC	2 cut(s)	649, 834
BssMI	GATC	3 cut(s)	703, 745, 892
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	557
Bst4CI	ACNGT	2 cut(s)	248, 776
Bst6I	CTCTTC	3 cut(s)	240, 438, 531
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	651
BstDEI	CTNAG	2 cut(s)	28, 186
BstF5I	GGATG	2 cut(s)	343, 393
BstKTI	GATC	3 cut(s)	706, 748, 895
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	3 cut(s)	703, 745, 892
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 461, 617, 800, 803
BstNI	CCWGG	1 cut(s)	557
BstSCI	CCNGG	2 cut(s)	532, 555
BstSFI	CTRYAG	1 cut(s)	925
BstSLI	GKGCMC	2 cut(s)	134, 285
BstV1I	GCAGC	5 cut(s)	507, 603, 781, 790, 803
BstV2I	GAAGAC	1 cut(s)	858
BstX2I	RGATCY	1 cut(s)	892
BstYI	RGATCY	1 cut(s)	892
BsuI	GTATCC	1 cut(s)	830
BsuRI	GGCC	4 cut(s)	14, 418, 500, 786
BtrI	CACGTC	1 cut(s)	179
BtsCI	GGATG	2 cut(s)	343, 393
BtsI	GCAGTG	1 cut(s)	467
BtsIMutI	CAGTG	2 cut(s)	467, 781
Cac8I	GCNNGC	1 cut(s)	651
CaiI	CAGNNNCTG	1 cut(s)	872
Cfr13I	GGNCC	2 cut(s)	499, 641
CviAII	CATG	1 cut(s)	496
DdeI	CTNAG	2 cut(s)	28, 186
DpnI	GATC	3 cut(s)	705, 747, 894
DpnII	GATC	3 cut(s)	703, 745, 892
EaeI	YGGCCR	1 cut(s)	416
Eam1104I	CTCTTC	3 cut(s)	240, 438, 531
EarI	CTCTTC	3 cut(s)	240, 438, 531
Eco147I	AGGCCT	1 cut(s)	786
Eco31I	GGTCTC	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	641
EcoRII	CCWGG	1 cut(s)	555
FaeI	CATG	1 cut(s)	499
FaiI	YATR	8 cut(s)	351, 461, 497, 717, 782, 821, 887, 948
FaqI	GGGAC	1 cut(s)	654
FatI	CATG	1 cut(s)	495
FauI	CCCGC	1 cut(s)	642
Fnu4HI	GCNGC	6 cut(s)	521, 592, 726, 792, 795, 804
FokI	GGATG	2 cut(s)	350, 400
Fsp4HI	GCNGC	6 cut(s)	521, 592, 726, 792, 795, 804
FspBI	CTAG	1 cut(s)	955
GluI	GCNGC	6 cut(s)	521, 592, 726, 792, 795, 804
GsaI	CCCAGC	1 cut(s)	641
HaeIII	GGCC	4 cut(s)	14, 418, 500, 786
HapII	CCGG	2 cut(s)	419, 533
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	499
HinfI	GANTC	1 cut(s)	220
HpaII	CCGG	2 cut(s)	419, 533
Hpy188I	TCNGA	1 cut(s)	861
Hpy188III	TCNNGA	2 cut(s)	364, 664
HpyAV	CCTTC	5 cut(s)	25, 563, 601, 759, 944
HpyCH4III	ACNGT	2 cut(s)	248, 776
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	8 cut(s)	472, 542, 591, 620, 674, 791, 866, 927
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 461, 617, 800, 803
HpyF3I	CTNAG	2 cut(s)	28, 186
HpySE526I	ACGT	1 cut(s)	178
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	499
Kzo9I	GATC	3 cut(s)	703, 745, 892
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	2 cut(s)	433, 904
Lsp1109I	GCAGC	5 cut(s)	507, 603, 781, 790, 803
LweI	GCATC	1 cut(s)	859
MaeI	CTAG	1 cut(s)	955
MaeII	ACGT	1 cut(s)	178
MaeIII	GTNAC	3 cut(s)	190, 328, 823
MalI	GATC	3 cut(s)	705, 747, 894
MbiI	CCGCTC	2 cut(s)	649, 834
MboI	GATC	3 cut(s)	703, 745, 892
MflI	RGATCY	1 cut(s)	892
MhlI	GDGCHC	2 cut(s)	134, 285
MluCI	AATT	3 cut(s)	320, 356, 488
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	8 cut(s)	88, 101, 365, 433, 512, 534, 763, 895
MroXI	GAANNNNTTC	1 cut(s)	855
MseI	TTAA	2 cut(s)	402, 576
MspA1I	CMGCKG	1 cut(s)	794
MspI	CCGG	2 cut(s)	419, 533
MspR9I	CCNGG	2 cut(s)	534, 557
Mva1269I	GAATGC	3 cut(s)	455, 868, 920
MvaI	CCWGG	1 cut(s)	557
MwoI	GCNNNNNNNGC	5 cut(s)	11, 461, 617, 800, 803
NciI	CCSGG	1 cut(s)	534
NdeII	GATC	3 cut(s)	703, 745, 892
NlaIII	CATG	1 cut(s)	499
NlaIV	GGNNCC	3 cut(s)	284, 642, 687
NmuCI	GTSAC	1 cut(s)	190
PceI	AGGCCT	1 cut(s)	786
PciSI	GCTCTTC	1 cut(s)	240
PctI	GAATGC	3 cut(s)	455, 868, 920
PdmI	GAANNNNTTC	1 cut(s)	855
PkrI	GCNGC	6 cut(s)	522, 593, 727, 793, 796, 805
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
Psp6I	CCWGG	1 cut(s)	555
PspFI	CCCAGC	1 cut(s)	637
PspGI	CCWGG	1 cut(s)	555
PspN4I	GGNNCC	3 cut(s)	284, 642, 687
PspPI	GGNCC	2 cut(s)	499, 641
PstI	CTGCAG	1 cut(s)	929
PstNI	CAGNNNCTG	1 cut(s)	872
PsuI	RGATCY	1 cut(s)	892
PvuII	CAGCTG	1 cut(s)	794
SapI	GCTCTTC	1 cut(s)	240
SaqAI	TTAA	2 cut(s)	402, 576
SatI	GCNGC	6 cut(s)	521, 592, 726, 792, 795, 804
Sau3AI	GATC	3 cut(s)	703, 745, 892
Sau96I	GGNCC	2 cut(s)	499, 641
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	2 cut(s)	534, 557
SduI	GDGCHC	2 cut(s)	134, 285
SfaNI	GCATC	1 cut(s)	859
SfcI	CTRYAG	1 cut(s)	925
SinI	GGWCC	1 cut(s)	641
SmlI	CTYRAG	2 cut(s)	362, 938
SmoI	CTYRAG	2 cut(s)	362, 938
Sse9I	AATT	3 cut(s)	320, 356, 488
SseBI	AGGCCT	1 cut(s)	786
SsiI	CCGC	5 cut(s)	286, 611, 649, 725, 834
SspMI	CTAG	1 cut(s)	955
StuI	AGGCCT	1 cut(s)	786
StyD4I	CCNGG	2 cut(s)	532, 555
TaaI	ACNGT	2 cut(s)	248, 776
TaiI	ACGT	1 cut(s)	181
TaqI	TCGA	3 cut(s)	218, 264, 912
TaqII	GACCGA	1 cut(s)	8
TasI	AATT	3 cut(s)	320, 356, 488
TauI	GCSGC	1 cut(s)	728
Tru1I	TTAA	2 cut(s)	402, 576
Tru9I	TTAA	2 cut(s)	402, 576
TscAI	CASTG	2 cut(s)	474, 781
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	5 cut(s)	520, 591, 791, 794, 803
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	6 cut(s)	315, 448, 484, 827, 864, 874
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	2 cut(s)	474, 781
VpaK11BI	GGWCC	1 cut(s)	641
XcmI	CCANNNNNNNNNTGG	1 cut(s)	718
XmnI	GAANNNNTTC	1 cut(s)	855
XspI	CTAG	1 cut(s)	955

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.