Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0011244

Physical Location & Seq

Genomic Coordinates Reverse (-)

30191962 .. 30195587

Gene Structure 3626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1160600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCGTCAATGGCGTCCTGTCATACCTTAGCTACATTATCTTTTATAAACCCGTTGCCATCTCACAAAAACACAACCCCCATTGCCAACCTTAAATCCCAAGAAAGGACCTTACAATCTTCACTGGTGGGCACAGCAATAATCATTGGCAAAACAATGAGCAGCAAGATTGGAACAACATCTAGCTCTGCTTCTGCTTCTTCTTTTTCTACTCTTCCTTCTGCTCTTCTCTTCGATTGCGATGGTGTGCTTGTCGACACGGAGAAGGACGGCCACCGGATTTCTTTCAACAACACTTTCAAAGAGAAAGAATTGGGTGTTACTTGGGATGTCGATTTATTCGGCGAATTGCTCAAGATTGCAGGTGGAAAAGAAAGAATGACAACCTATTTTAACAACACGGGTTGGCCGGAAAATGCTCCGAAGAGTGAAGAAGAAAGAAAAGCATTCGTAGTTTCACTTCACAAGCGAAAGACAGAGTTGTTCTTGGCCCTTATTGAGAAAAAGTCACTGCCGCTTCGGCCAGGGGTTGCAAAGCTGATAGATCAGGCTTTAGCAGAAGGAGTTAAGGTTGCCGTCTGCAGCGCTTCCAATGAGAAGGCGGTCTCTGCAATAGTTTCAATCTTGCTGGGACCAGAACGGGCAGAAAAAATCAAGATATTCGCCGGAGAAGTGGTTCCTCGCAAGAAGCCTGATCCCGCTATCTATTTATTGGCGGCTAACACTCTCGGCGTTGATCCTTCAAGTTGTGTGGTAATCGAGGACAGTGCTATAGGCCTTGCAGCTGCCAAAGCTGCTGGAATGAAGTGTGTCATAACCAAGAGCGGATACACAGTTGATGAAGATTTTCAGAATGCAGATGCAGTTTTTGACGTCATCGGAGATCCTCCAGAGGAGCGATTTGACTTGGCATTCTGCAGAAGCCTTCTCAAGCAATCTGTGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

316

Amino Acids

33.74

Weight (kDa)

6.46

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	75 - 267	1e-25	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	77 - 271	3.6e-16	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	229 - 291	4.7e-08	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48420
fragaria_vesca	FvH4_5g07070 FvH4_5g07070 FvH4_5g07070
malus_domestica	MD06G1160600.v1.1 MD14G1165800.v1.1
prunus_persica	Prupe.5G159700_v2.0.a1 Prupe.5G159800_v2.0.a1
pyrus_communis	pycom06g14360 pycom14g13840
rosa_chinensis	RchiOBHm_Chr7g0191481
rosa_laevigata	RLG00000004445
rosa_multiflora	Rmu_sc0002661.1_g000011
rosa_roxburghii	Rroxscaffold_157G00438420 Rroxscaffold_3G00263760
rosa_rugosa	Rorug06G0510500
rosa_samantha	Rh7AG118700 Rh7BG120700 Rh7CG123500 Rh7DG121600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	47
AarI	CACCTGC	1 cut(s)	353
AatII	GACGTC	1 cut(s)	876
Acc36I	ACCTGC	1 cut(s)	353
AccBSI	CCGCTC	1 cut(s)	825
AccI	GTMKAC	1 cut(s)	255
AciI	CCGC	5 cut(s)	515, 602, 699, 716, 825
AclWI	GGATC	3 cut(s)	689, 731, 878
AcoI	YGGCCR	3 cut(s)	271, 407, 521
AcyI	GRCGYC	3 cut(s)	5, 14, 873
AfeI	AGCGCT	1 cut(s)	586
AfiI	CCNNNNNNNGG	1 cut(s)	105
AgsI	TTSAA	4 cut(s)	289, 301, 621, 744
AjnI	CCWGG	1 cut(s)	523
AloI	GAACNNNNNNTCC	2 cut(s)	660, 692
AluBI	AGCT	6 cut(s)	32, 186, 538, 785, 794, 945
AluI	AGCT	6 cut(s)	32, 186, 538, 785, 794, 945
Alw26I	GTCTC	1 cut(s)	610
AlwI	GGATC	3 cut(s)	689, 731, 878
Aor51HI	AGCGCT	1 cut(s)	586
AoxI	GGCC	5 cut(s)	271, 407, 489, 521, 775
ApeKI	GCWGC	5 cut(s)	162, 582, 782, 785, 794
Asp700I	GAANNNNTTC	2 cut(s)	675, 846
AspLEI	GCGC	1 cut(s)	587
AspS9I	GGNCC	3 cut(s)	108, 490, 632
AvaII	GGWCC	2 cut(s)	108, 632
BaeGI	GKGCMC	1 cut(s)	134
BarI	GAAGNNNNNNTAC	2 cut(s)	444, 476
BbvI	GCAGC	5 cut(s)	174, 594, 772, 781, 794
BccI	CCATC	2 cut(s)	67, 236
BceAI	ACGGC	2 cut(s)	286, 560
BcgI	CGANNNNNNTGC	2 cut(s)	749, 783
BciT130I	CCWGG	1 cut(s)	525
BciVI	GTATCC	1 cut(s)	821
BcoDI	GTCTC	1 cut(s)	610
BfaI	CTAG	2 cut(s)	183, 946
BfmI	CTRYAG	3 cut(s)	580, 771, 916
BfoI	RGCGCY	1 cut(s)	588
BfuAI	ACCTGC	1 cut(s)	353
BfuI	GTATCC	1 cut(s)	821
BglI	GCCNNNNNGGC	1 cut(s)	520
BisI	GCNGC	7 cut(s)	163, 515, 583, 717, 783, 786, 795
BlsI	GCNGC	7 cut(s)	164, 516, 584, 718, 784, 787, 796
Bme1390I	CCNGG	1 cut(s)	525
Bme18I	GGWCC	2 cut(s)	108, 632
BmgT120I	GGNCC	3 cut(s)	108, 490, 632
BmiI	GGNNCC	2 cut(s)	633, 678
BmrFI	CCNGG	1 cut(s)	525
BmsI	GCATC	1 cut(s)	850
BpmI	CTGGAG	1 cut(s)	873
Bpu10I	CCTNAGC	1 cut(s)	28
BpuEI	CTTGAG	2 cut(s)	338, 914
BsaHI	GRCGYC	3 cut(s)	5, 14, 873
BsaI	GGTCTC	1 cut(s)	610
BsaJI	CCNNGG	1 cut(s)	524
BsaWI	WCCGGW	1 cut(s)	276
BsaXI	ACNNNNNCTCC	4 cut(s)	555, 585, 660, 690
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse1I	ACTGG	1 cut(s)	129
Bse3DI	GCAATG	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	525
BseDI	CCNNGG	1 cut(s)	524
BseGI	GGATG	1 cut(s)	334
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMI	GCAATG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	908
BseSI	GKGCMC	1 cut(s)	134
BseXI	GCAGC	5 cut(s)	174, 594, 772, 781, 794
BseYI	CCCAGC	1 cut(s)	628
BshFI	GGCC	5 cut(s)	273, 409, 491, 523, 777
BsiSI	CCGG	3 cut(s)	277, 410, 666
BslFI	GGGAC	1 cut(s)	645
BslI	CCNNNNNNNGG	1 cut(s)	105
BsmAI	GTCTC	1 cut(s)	610
BsmFI	GGGAC	1 cut(s)	645
BsmI	GAATGC	3 cut(s)	446, 859, 911
BsnI	GGCC	5 cut(s)	273, 409, 491, 523, 777
Bso31I	GGTCTC	1 cut(s)	610
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	4 cut(s)	544, 694, 736, 883
BspACI	CCGC	5 cut(s)	515, 602, 699, 716, 825
BspANI	GGCC	5 cut(s)	273, 409, 491, 523, 777
BspLI	GGNNCC	2 cut(s)	633, 678
BspMAI	CTGCAG	2 cut(s)	584, 920
BspMI	ACCTGC	1 cut(s)	353
BspPI	GGATC	3 cut(s)	689, 731, 878
BspQI	GCTCTTC	1 cut(s)	231
BspTNI	GGTCTC	1 cut(s)	610
BsrBI	CCGCTC	1 cut(s)	825
BsrDI	GCAATG	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	129
BssECI	CCNNGG	1 cut(s)	524
BssMI	GATC	4 cut(s)	544, 694, 736, 883
BssNI	GRCGYC	3 cut(s)	5, 14, 873
Bst2UI	CCWGG	1 cut(s)	525
Bst4CI	ACNGT	2 cut(s)	767, 835
Bst6I	CTCTTC	4 cut(s)	219, 231, 236, 419
BstACI	GRCGYC	3 cut(s)	5, 14, 873
BstDEI	CTNAG	1 cut(s)	28
BstF5I	GGATG	1 cut(s)	334
BstH2I	RGCGCY	1 cut(s)	588
BstHHI	GCGC	1 cut(s)	587
BstKTI	GATC	4 cut(s)	547, 697, 739, 886
BstMAI	GTCTC	1 cut(s)	610
BstMBI	GATC	4 cut(s)	544, 694, 736, 883
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 520, 608, 791, 794
BstNI	CCWGG	1 cut(s)	525
BstSCI	CCNGG	1 cut(s)	523
BstSFI	CTRYAG	3 cut(s)	580, 771, 916
BstSLI	GKGCMC	1 cut(s)	134
BstV1I	GCAGC	5 cut(s)	174, 594, 772, 781, 794
BstX2I	RGATCY	1 cut(s)	883
BstYI	RGATCY	1 cut(s)	883
BsuI	GTATCC	1 cut(s)	821
BsuRI	GGCC	5 cut(s)	273, 409, 491, 523, 777
BtgZI	GCGATG	1 cut(s)	255
BtsCI	GGATG	1 cut(s)	334
BtsI	GCAGTG	1 cut(s)	509
BtsIMutI	CAGTG	3 cut(s)	122, 509, 772
BveI	ACCTGC	1 cut(s)	353
CfoI	GCGC	1 cut(s)	587
Cfr13I	GGNCC	3 cut(s)	108, 490, 632
CseI	GACGC	1 cut(s)	3
CspCI	CAANNNNNGTGG	2 cut(s)	732, 767
DdeI	CTNAG	1 cut(s)	28
DpnI	GATC	4 cut(s)	546, 696, 738, 885
DpnII	GATC	4 cut(s)	544, 694, 736, 883
EaeI	YGGCCR	3 cut(s)	271, 407, 521
Eam1104I	CTCTTC	4 cut(s)	219, 231, 236, 419
EarI	CTCTTC	4 cut(s)	219, 231, 236, 419
Eco147I	AGGCCT	1 cut(s)	777
Eco31I	GGTCTC	1 cut(s)	610
Eco47I	GGWCC	2 cut(s)	108, 632
Eco47III	AGCGCT	1 cut(s)	586
EcoO109I	RGGNCCY	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	523
FaiI	YATR	4 cut(s)	24, 47, 773, 815
FaqI	GGGAC	1 cut(s)	645
FauI	CCCGC	1 cut(s)	706
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	7 cut(s)	163, 515, 583, 717, 783, 786, 795
FokI	GGATG	1 cut(s)	341
Fsp4HI	GCNGC	7 cut(s)	163, 515, 583, 717, 783, 786, 795
FspBI	CTAG	2 cut(s)	183, 946
GlaI	GCGC	1 cut(s)	586
GluI	GCNGC	7 cut(s)	163, 515, 583, 717, 783, 786, 795
GsaI	CCCAGC	1 cut(s)	632
GsuI	CTGGAG	1 cut(s)	873
HaeII	RGCGCY	1 cut(s)	588
HaeIII	GGCC	5 cut(s)	273, 409, 491, 523, 777
HapII	CCGG	3 cut(s)	277, 410, 666
HgaI	GACGC	1 cut(s)	3
HhaI	GCGC	1 cut(s)	587
Hin1I	GRCGYC	3 cut(s)	5, 14, 873
Hin6I	GCGC	1 cut(s)	585
HinP1I	GCGC	1 cut(s)	585
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HpaII	CCGG	3 cut(s)	277, 410, 666
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	3 cut(s)	423, 852, 881
Hpy188III	TCNNGA	3 cut(s)	355, 655, 890
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	6 cut(s)	228, 259, 554, 592, 750, 935
HpyCH4III	ACNGT	2 cut(s)	767, 835
HpyCH4IV	ACGT	1 cut(s)	873
HpyCH4V	TGCA	8 cut(s)	362, 533, 582, 611, 782, 857, 863, 918
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 520, 608, 791, 794
HpyF3I	CTNAG	1 cut(s)	28
HpySE526I	ACGT	1 cut(s)	873
Hsp92I	GRCGYC	3 cut(s)	5, 14, 873
HspAI	GCGC	1 cut(s)	585
Kzo9I	GATC	4 cut(s)	544, 694, 736, 883
LguI	GCTCTTC	1 cut(s)	231
LmnI	GCTCC	2 cut(s)	424, 895
Lsp1109I	GCAGC	5 cut(s)	174, 594, 772, 781, 794
LweI	GCATC	1 cut(s)	850
MaeI	CTAG	2 cut(s)	183, 946
MaeII	ACGT	1 cut(s)	873
MaeIII	GTNAC	2 cut(s)	319, 507
MalI	GATC	4 cut(s)	546, 696, 738, 885
MbiI	CCGCTC	1 cut(s)	825
MboI	GATC	4 cut(s)	544, 694, 736, 883
MboII	GAAGA	9 cut(s)	111, 192, 206, 218, 223, 436, 443, 446, 854
MflI	RGATCY	1 cut(s)	883
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	2 cut(s)	311, 347
MnlI	CCTC	4 cut(s)	690, 754, 886, 897
MroXI	GAANNNNTTC	2 cut(s)	675, 846
MseI	TTAA	3 cut(s)	93, 393, 567
MspA1I	CMGCKG	1 cut(s)	785
MspI	CCGG	3 cut(s)	277, 410, 666
MspR9I	CCNGG	1 cut(s)	525
Mva1269I	GAATGC	3 cut(s)	446, 859, 911
MvaI	CCWGG	1 cut(s)	525
MwoI	GCNNNNNNNGC	5 cut(s)	11, 520, 608, 791, 794
NdeII	GATC	4 cut(s)	544, 694, 736, 883
NlaIV	GGNNCC	2 cut(s)	633, 678
NmeAIII	GCCGAG	1 cut(s)	708
NmuCI	GTSAC	1 cut(s)	507
PaqCI	CACCTGC	1 cut(s)	353
PceI	AGGCCT	1 cut(s)	777
PciSI	GCTCTTC	1 cut(s)	231
PctI	GAATGC	3 cut(s)	446, 859, 911
PdmI	GAANNNNTTC	2 cut(s)	675, 846
PkrI	GCNGC	7 cut(s)	164, 516, 584, 718, 784, 787, 796
PpuMI	RGGWCCY	1 cut(s)	108
PsiI	TTATAA	1 cut(s)	47
Psp5II	RGGWCCY	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	523
PspFI	CCCAGC	1 cut(s)	628
PspGI	CCWGG	1 cut(s)	523
PspN4I	GGNNCC	2 cut(s)	633, 678
PspPI	GGNCC	3 cut(s)	108, 490, 632
PspPPI	RGGWCCY	1 cut(s)	108
PstI	CTGCAG	2 cut(s)	584, 920
PsuI	RGATCY	1 cut(s)	883
PvuII	CAGCTG	1 cut(s)	785
SalI	GTCGAC	1 cut(s)	254
SapI	GCTCTTC	1 cut(s)	231
SaqAI	TTAA	3 cut(s)	93, 393, 567
SatI	GCNGC	7 cut(s)	163, 515, 583, 717, 783, 786, 795
Sau3AI	GATC	4 cut(s)	544, 694, 736, 883
Sau96I	GGNCC	3 cut(s)	108, 490, 632
ScrFI	CCNGG	1 cut(s)	525
SduI	GDGCHC	1 cut(s)	134
SfaNI	GCATC	1 cut(s)	850
SfcI	CTRYAG	3 cut(s)	580, 771, 916
SinI	GGWCC	2 cut(s)	108, 632
SmlI	CTYRAG	2 cut(s)	353, 929
SmoI	CTYRAG	2 cut(s)	353, 929
Sse9I	AATT	2 cut(s)	311, 347
SseBI	AGGCCT	1 cut(s)	777
SsiI	CCGC	5 cut(s)	515, 602, 699, 716, 825
SspMI	CTAG	2 cut(s)	183, 946
StuI	AGGCCT	1 cut(s)	777
StyD4I	CCNGG	1 cut(s)	523
TaaI	ACNGT	2 cut(s)	767, 835
TaiI	ACGT	1 cut(s)	876
TaqI	TCGA	4 cut(s)	234, 255, 333, 759
TasI	AATT	2 cut(s)	311, 347
TauI	GCSGC	2 cut(s)	517, 719
Tru1I	TTAA	3 cut(s)	93, 393, 567
Tru9I	TTAA	3 cut(s)	93, 393, 567
TscAI	CASTG	3 cut(s)	129, 516, 772
TseFI	GTSAC	1 cut(s)	507
TseI	GCWGC	5 cut(s)	162, 582, 782, 785, 794
Tsp45I	GTSAC	1 cut(s)	507
TspDTI	ATGAA	2 cut(s)	818, 855
TspGWI	ACGGA	1 cut(s)	275
TspRI	CASTG	3 cut(s)	129, 516, 772
VpaK11BI	GGWCC	2 cut(s)	108, 632
XmiI	GTMKAC	1 cut(s)	255
XmnI	GAANNNNTTC	2 cut(s)	675, 846
XspI	CTAG	2 cut(s)	183, 946
ZraI	GACGTC	1 cut(s)	874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.