Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012969

Physical Location & Seq

Genomic Coordinates Forward (+)

18196308 .. 18198492

Gene Structure 2185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G49100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGTTTATATCGCATCGTGGGACGAATTCGTTGATCGATCTGTTCAGCTTTTTCGAGCTGATCCGGAATCTACTCGGTATGTGATGAAGTATAGACACTGTGACGGCAAGTTGGTTCTTAAGGTTACTGATAACAAAGAGTGTCTCAAGTTCAAGACAGACCAAGCACAAGAAGCGAAGAAGATGGAGAAACTGAATAACATATTTTTCACCCTCATGGCCAGAGGACCTGATGTCGATCTCTCAGAAGTCACCGGGAAAGAACAGATGGAGACACAGCCTGCCAAGAAAGGAAGAGGAAGGAAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005047 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005785 GO:0005786 GO:0005789 GO:0005791 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006616 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042886 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045047 GO:0045184 GO:0046907 GO:0048500 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098796 GO:0098827 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP9-21

Protein Analysis

103

Amino Acids

12.02

Weight (kDa)

9.12

Isoelectric Point (pI)

28.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP9-21	PF05486	5 - 66	4.1e-15	Signal recognition particle 9 kDa protein (SRP9)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49100 AT3G49100
fragaria_vesca	FvH4_2g22310
malus_domestica	MD05G1204500.v1.1 MD10G1191500.v1.1
prunus_persica	Prupe.8G230800_v2.0.a1
pyrus_communis	pycom05g19080 pycom10g16510
rosa_chinensis	RchiOBHm_Chr6g0289311
rosa_laevigata	RLG00000012314
rosa_multiflora	Rmu_sc0001527.1_g000023
rosa_roxburghii	Rroxscaffold_7G00179350
rosa_rugosa	Rorug06G0202600
rosa_samantha	Rh6AG313500 Rh6BG321000 Rh6CG327200 Rh6DG312900
rosa_wichuraiana	Rw6G027100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	64
AclWI	GGATC	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	1 cut(s)	26
AflII	CTTAAG	1 cut(s)	119
AgsI	TTSAA	1 cut(s)	154
AhdI	GACNNNNNGTC	1 cut(s)	233
AluBI	AGCT	2 cut(s)	49, 59
AluI	AGCT	2 cut(s)	49, 59
Alw26I	GTCTC	2 cut(s)	149, 266
AlwI	GGATC	1 cut(s)	56
Aor13HI	TCCGGA	1 cut(s)	64
AoxI	GGCC	1 cut(s)	219
ApoI	RAATTY	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	227
AsuC2I	CCSGG	1 cut(s)	256
AsuHPI	GGTGA	2 cut(s)	202, 244
AvaII	GGWCC	1 cut(s)	227
BalI	TGGCCA	1 cut(s)	221
BccI	CCATC	2 cut(s)	178, 262
BceAI	ACGGC	1 cut(s)	121
BcnI	CCSGG	1 cut(s)	256
BcoDI	GTCTC	2 cut(s)	149, 266
BfrI	CTTAAG	1 cut(s)	119
Bme1390I	CCNGG	1 cut(s)	256
Bme18I	GGWCC	1 cut(s)	227
BmeRI	GACNNNNNGTC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	227
BmrFI	CCNGG	1 cut(s)	256
BmsI	GCATC	1 cut(s)	23
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	256
Bsa29I	ATCGAT	1 cut(s)	37
BsaBI	GATNNNNATC	1 cut(s)	237
BsaWI	WCCGGW	1 cut(s)	64
Bse8I	GATNNNNATC	1 cut(s)	237
BseAI	TCCGGA	1 cut(s)	64
BseCI	ATCGAT	1 cut(s)	37
BseJI	GATNNNNATC	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	258
BshFI	GGCC	1 cut(s)	221
BshVI	ATCGAT	1 cut(s)	37
BsiSI	CCGG	2 cut(s)	65, 255
BslFI	GGGAC	1 cut(s)	35
BsmAI	GTCTC	2 cut(s)	149, 266
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	221
Bsp13I	TCCGGA	1 cut(s)	64
Bsp143I	GATC	4 cut(s)	34, 38, 61, 238
BspANI	GGCC	1 cut(s)	221
BspCNI	CTCAG	1 cut(s)	257
BspDI	ATCGAT	1 cut(s)	37
BspEI	TCCGGA	1 cut(s)	64
BspPI	GGATC	1 cut(s)	56
BspTI	CTTAAG	1 cut(s)	119
BssMI	GATC	4 cut(s)	34, 38, 61, 238
Bst4CI	ACNGT	1 cut(s)	101
Bst6I	CTCTTC	1 cut(s)	289
BstAFI	CTTAAG	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	1 cut(s)	244
BstKTI	GATC	4 cut(s)	37, 41, 64, 241
BstMAI	GTCTC	2 cut(s)	149, 266
BstMBI	GATC	4 cut(s)	34, 38, 61, 238
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	254
Bsu15I	ATCGAT	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	221
BsuTUI	ATCGAT	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	227
ClaI	ATCGAT	1 cut(s)	37
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	4 cut(s)	49, 59, 221, 280
CviKI_1	RGCY	4 cut(s)	49, 59, 221, 280
DdeI	CTNAG	1 cut(s)	244
DpnI	GATC	4 cut(s)	36, 40, 63, 240
DpnII	GATC	4 cut(s)	34, 38, 61, 238
DriI	GACNNNNNGTC	1 cut(s)	233
EaeI	YGGCCR	1 cut(s)	219
Eam1104I	CTCTTC	1 cut(s)	289
Eam1105I	GACNNNNNGTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	227
EcoO109I	RGGNCCY	1 cut(s)	227
EcoRI	GAATTC	1 cut(s)	26
FaeI	CATG	1 cut(s)	220
FaiI	YATR	5 cut(s)	9, 81, 93, 203, 218
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	221
HapII	CCGG	2 cut(s)	65, 255
Hin1II	CATG	1 cut(s)	220
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	2 cut(s)	65, 255
HphI	GGTGA	2 cut(s)	202, 244
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	2 cut(s)	65, 154
HpyAV	CCTTC	1 cut(s)	294
HpyCH4III	ACNGT	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	1 cut(s)	244
Hsp92II	CATG	1 cut(s)	220
Kpn2I	TCCGGA	1 cut(s)	64
Kzo9I	GATC	4 cut(s)	34, 38, 61, 238
LpnPI	CCDG	5 cut(s)	78, 235, 243, 268, 294
LweI	GCATC	1 cut(s)	23
MaeIII	GTNAC	3 cut(s)	101, 124, 250
MalI	GATC	4 cut(s)	36, 40, 63, 240
MboI	GATC	4 cut(s)	34, 38, 61, 238
MboII	GAAGA	3 cut(s)	190, 193, 306
MlsI	TGGCCA	1 cut(s)	221
MluCI	AATT	1 cut(s)	26
MluNI	TGGCCA	1 cut(s)	221
MnlI	CCTC	3 cut(s)	218, 224, 290
Mox20I	TGGCCA	1 cut(s)	221
MroI	TCCGGA	1 cut(s)	64
MscI	TGGCCA	1 cut(s)	221
MseI	TTAA	1 cut(s)	120
MslI	CAYNNNNRTG	1 cut(s)	215
Msp20I	TGGCCA	1 cut(s)	221
MspCI	CTTAAG	1 cut(s)	119
MspI	CCGG	2 cut(s)	65, 255
MspR9I	CCNGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	1 cut(s)	173
NciI	CCSGG	1 cut(s)	256
NdeII	GATC	4 cut(s)	34, 38, 61, 238
NlaIII	CATG	1 cut(s)	220
NmuCI	GTSAC	2 cut(s)	101, 250
PfeI	GAWTC	1 cut(s)	68
PpuMI	RGGWCCY	1 cut(s)	227
Psp5II	RGGWCCY	1 cut(s)	227
PspPI	GGNCC	1 cut(s)	227
PspPPI	RGGWCCY	1 cut(s)	227
RseI	CAYNNNNRTG	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	120
Sau3AI	GATC	4 cut(s)	34, 38, 61, 238
Sau96I	GGNCC	1 cut(s)	227
ScrFI	CCNGG	1 cut(s)	256
SetI	ASST	4 cut(s)	51, 61, 126, 232
SfaNI	GCATC	1 cut(s)	23
SinI	GGWCC	1 cut(s)	227
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	2 cut(s)	119, 146
SmoI	CTYRAG	2 cut(s)	119, 146
Sse9I	AATT	1 cut(s)	26
StyD4I	CCNGG	1 cut(s)	254
TaaI	ACNGT	1 cut(s)	101
TaqI	TCGA	3 cut(s)	37, 55, 237
TasI	AATT	1 cut(s)	26
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	1 cut(s)	104
TseFI	GTSAC	2 cut(s)	101, 250
Tsp45I	GTSAC	2 cut(s)	101, 250
TspDTI	ATGAA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	104
Vha464I	CTTAAG	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	227
XapI	RAATTY	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.