Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0012969

Physical Location & Seq

Genomic Coordinates Reverse (-)

21988913 .. 21991351

Gene Structure 2439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g19080.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGATGACATACCCGCCCCGACCCGGCTGCTTCCCTAGTCGAACGCTCAAAAGCGGGATGGGCTATGATCTTGCCCATCCTTCCTGTAAGCAAAGACAAAAACCCCAATTCTCCCATCTCCCCCTCTCCGAAAGTCGCAGTGCGATCCACGCAACAATGGTTTACATAACTTCCTGGGACGAGTTCGTCGAGCGATCCGTCCAGCTTTTCCGCGCCGATCCCGAATCCACTCGATACGTGATGAAATACCGGCATTGCGAGGGGAAATTGGTTCTTAAGGTTACTGATAATAAAGAGTGTCTGAAATTCAAAACAGACCAGGCGCAAGACGCTAAGAAGATGGAGAAACTCAACAACATATTCTTCACTTTGATGTCCCGAGGTCCAGATGCGGATCCATCAGAAGTTACTGGGAAAGACCAGATGGACGCACAGCCAACCAAGAAAGGACGGGGAAGAAAACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005047 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005785 GO:0005786 GO:0005789 GO:0005791 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006616 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042886 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045047 GO:0045184 GO:0046907 GO:0048500 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098796 GO:0098827 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP9-21

Protein Analysis

156

Amino Acids

17.82

Weight (kDa)

9.49

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49100 AT3G49100
fragaria_vesca	FvH4_2g22310
malus_domestica	MD05G1204500.v1.1 MD10G1191500.v1.1
prunus_persica	Prupe.8G230800_v2.0.a1
pyrus_communis	pycom05g19080 pycom10g16510
rosa_chinensis	RchiOBHm_Chr6g0289311
rosa_laevigata	RLG00000012314
rosa_multiflora	Rmu_sc0001527.1_g000023
rosa_roxburghii	Rroxscaffold_7G00179350
rosa_rugosa	Rorug06G0202600
rosa_samantha	Rh6AG313500 Rh6BG321000 Rh6CG327200 Rh6DG312900
rosa_wichuraiana	Rw6G027100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	185
AccII	CGCG	1 cut(s)	213
AciI	CCGC	4 cut(s)	14, 54, 211, 392
AclWI	GGATC	5 cut(s)	139, 189, 212, 389, 402
AcsI	RAATTY	1 cut(s)	305
AfiI	CCNNNNNNNGG	1 cut(s)	23
AflII	CTTAAG	1 cut(s)	275
AgsI	TTSAA	1 cut(s)	310
AjnI	CCWGG	2 cut(s)	173, 318
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
AlwI	GGATC	5 cut(s)	139, 189, 212, 389, 402
Ama87I	CYCGRG	1 cut(s)	378
ApeKI	GCWGC	1 cut(s)	27
ApoI	RAATTY	1 cut(s)	305
AspLEI	GCGC	2 cut(s)	215, 325
AspS9I	GGNCC	1 cut(s)	383
AsuC2I	CCSGG	1 cut(s)	24
AvaI	CYCGRG	1 cut(s)	378
AvaII	GGWCC	1 cut(s)	383
BamHI	GGATCC	1 cut(s)	394
BbvI	GCAGC	1 cut(s)	14
BccI	CCATC	6 cut(s)	52, 84, 123, 334, 406, 418
BcgI	CGANNNNNNTGC	2 cut(s)	9, 43
BciT130I	CCWGG	2 cut(s)	175, 320
BcnI	CCSGG	1 cut(s)	24
BfaI	CTAG	1 cut(s)	36
BfrI	CTTAAG	1 cut(s)	275
BisI	GCNGC	1 cut(s)	28
BlsI	GCNGC	1 cut(s)	29
Bme1390I	CCNGG	3 cut(s)	24, 175, 320
Bme18I	GGWCC	1 cut(s)	383
BmeT110I	CYCGRG	1 cut(s)	378
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	1 cut(s)	396
BmrFI	CCNGG	3 cut(s)	24, 175, 320
BmrI	ACTGGG	1 cut(s)	420
BmsI	GCATC	1 cut(s)	379
BmuI	ACTGGG	1 cut(s)	420
BpuMI	CCSGG	1 cut(s)	24
BsaAI	YACGTR	1 cut(s)	238
BsaBI	GATNNNNATC	1 cut(s)	393
BsaJI	CCNNGG	2 cut(s)	174, 379
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse118I	RCCGGY	1 cut(s)	249
Bse1I	ACTGG	1 cut(s)	415
Bse3DI	GCAATG	1 cut(s)	253
Bse8I	GATNNNNATC	1 cut(s)	393
BseBI	CCWGG	2 cut(s)	175, 320
BseDI	CCNNGG	2 cut(s)	174, 379
BseGI	GGATG	2 cut(s)	63, 76
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMI	GCAATG	1 cut(s)	253
BseNI	ACTGG	1 cut(s)	415
BseXI	GCAGC	1 cut(s)	14
Bsh1236I	CGCG	1 cut(s)	213
BsiHKCI	CYCGRG	1 cut(s)	378
BsiSI	CCGG	2 cut(s)	24, 250
BslFI	GGGAC	2 cut(s)	191, 361
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmFI	GGGAC	2 cut(s)	191, 361
BsoBI	CYCGRG	1 cut(s)	378
Bsp143I	GATC	5 cut(s)	67, 144, 194, 217, 394
BspACI	CCGC	4 cut(s)	14, 54, 211, 392
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	396
BspPI	GGATC	5 cut(s)	139, 189, 212, 389, 402
BspTI	CTTAAG	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	253
BsrFI	RCCGGY	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	415
BssAI	RCCGGY	1 cut(s)	249
BssECI	CCNNGG	2 cut(s)	174, 379
BssMI	GATC	5 cut(s)	67, 144, 194, 217, 394
Bst2UI	CCWGG	2 cut(s)	175, 320
BstAFI	CTTAAG	1 cut(s)	275
BstBAI	YACGTR	1 cut(s)	238
BstDEI	CTNAG	1 cut(s)	333
BstF5I	GGATG	2 cut(s)	63, 76
BstFNI	CGCG	1 cut(s)	213
BstHHI	GCGC	2 cut(s)	215, 325
BstKTI	GATC	5 cut(s)	70, 147, 197, 220, 397
BstMBI	GATC	5 cut(s)	67, 144, 194, 217, 394
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 149, 329
BstNI	CCWGG	2 cut(s)	175, 320
BstSCI	CCNGG	3 cut(s)	22, 173, 318
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	14
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BtsCI	GGATG	2 cut(s)	63, 76
BtsI	GCAGTG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	145
CfoI	GCGC	2 cut(s)	215, 325
Cfr10I	RCCGGY	1 cut(s)	249
Cfr13I	GGNCC	1 cut(s)	383
CseI	GACGC	2 cut(s)	338, 437
CviJI	RGCY	4 cut(s)	27, 63, 205, 436
CviKI_1	RGCY	4 cut(s)	27, 63, 205, 436
DdeI	CTNAG	1 cut(s)	333
DpnI	GATC	5 cut(s)	69, 146, 196, 219, 396
DpnII	GATC	5 cut(s)	67, 144, 194, 217, 394
DrdI	GACNNNNNNGTC	1 cut(s)	185
DseDI	GACNNNNNNGTC	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	383
Eco88I	CYCGRG	1 cut(s)	378
EcoRII	CCWGG	2 cut(s)	173, 318
FaiI	YATR	4 cut(s)	10, 66, 167, 359
FaqI	GGGAC	2 cut(s)	191, 361
FauI	CCCGC	2 cut(s)	21, 47
Fnu4HI	GCNGC	1 cut(s)	28
FokI	GGATG	2 cut(s)	63, 70
Fsp4HI	GCNGC	1 cut(s)	28
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	2 cut(s)	214, 324
GluI	GCNGC	1 cut(s)	28
HapII	CCGG	2 cut(s)	24, 250
HgaI	GACGC	2 cut(s)	338, 437
HhaI	GCGC	2 cut(s)	215, 325
Hin6I	GCGC	2 cut(s)	213, 323
HinP1I	GCGC	2 cut(s)	213, 323
HinfI	GANTC	1 cut(s)	224
HpaII	CCGG	2 cut(s)	24, 250
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	3 cut(s)	130, 303, 403
Hpy188III	TCNNGA	3 cut(s)	221, 378, 386
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	1 cut(s)	90
HpyCH4IV	ACGT	1 cut(s)	237
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 149, 329
HpyF3I	CTNAG	1 cut(s)	333
HpySE526I	ACGT	1 cut(s)	237
HspAI	GCGC	2 cut(s)	213, 323
Kzo9I	GATC	5 cut(s)	67, 144, 194, 217, 394
Lsp1109I	GCAGC	1 cut(s)	14
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	280, 406
MalI	GATC	5 cut(s)	69, 146, 196, 219, 396
MboI	GATC	5 cut(s)	67, 144, 194, 217, 394
MboII	GAAGA	3 cut(s)	349, 355, 468
MflI	RGATCY	1 cut(s)	394
MluCI	AATT	3 cut(s)	107, 266, 305
MnlI	CCTC	3 cut(s)	134, 253, 374
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	1 cut(s)	371
MspCI	CTTAAG	1 cut(s)	275
MspI	CCGG	2 cut(s)	24, 250
MspR9I	CCNGG	3 cut(s)	24, 175, 320
MvaI	CCWGG	2 cut(s)	175, 320
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	3 cut(s)	60, 149, 329
NciI	CCSGG	1 cut(s)	24
NdeII	GATC	5 cut(s)	67, 144, 194, 217, 394
NlaIV	GGNNCC	1 cut(s)	396
PcsI	WCGNNNNNNNCGW	2 cut(s)	186, 195
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	1 cut(s)	29
Ppu21I	YACGTR	1 cut(s)	238
Psp6I	CCWGG	2 cut(s)	173, 318
PspGI	CCWGG	2 cut(s)	173, 318
PspN4I	GGNNCC	1 cut(s)	396
PspPI	GGNCC	1 cut(s)	383
PsuI	RGATCY	1 cut(s)	394
RseI	CAYNNNNRTG	1 cut(s)	371
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	1 cut(s)	28
Sau3AI	GATC	5 cut(s)	67, 144, 194, 217, 394
Sau96I	GGNCC	1 cut(s)	383
ScrFI	CCNGG	3 cut(s)	24, 175, 320
SetI	ASST	4 cut(s)	207, 240, 282, 385
SfaNI	GCATC	1 cut(s)	379
SinI	GGWCC	1 cut(s)	383
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	3 cut(s)	107, 266, 305
SsiI	CCGC	4 cut(s)	14, 54, 211, 392
SspMI	CTAG	1 cut(s)	36
StyD4I	CCNGG	3 cut(s)	22, 173, 318
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	3 cut(s)	40, 189, 232
TasI	AATT	3 cut(s)	107, 266, 305
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	1 cut(s)	27
TspDTI	ATGAA	1 cut(s)	257
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	1 cut(s)	145
Vha464I	CTTAAG	1 cut(s)	275
VpaK11BI	GGWCC	1 cut(s)	383
XapI	RAATTY	1 cut(s)	305
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.