Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0012969

Physical Location & Seq

Genomic Coordinates Reverse (-)

55206153 .. 55208650

Gene Structure 2498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG321000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGTGTACGTTACGTCCTGGGACGAATTCGTCGAGCGATCCGTGCAGTTGTTCCGCAACGATCCTGATTCGACTCGGTATGTGATGAAGTACCGGCATTGCGATGGAAAGCTGGTTCTCAAAGTCACCGATAATAAAGAGTGTCTGAAATTTAAGACAGATCAGGCGCAGGATGCTAAGAAGATGGAGAAACTGAACAACATATTCTTCACCTTGATGGCCAGGGGTCCTGAAGGTATATCACATTATCTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005047 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005785 GO:0005786 GO:0005789 GO:0005791 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006616 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042886 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045047 GO:0045184 GO:0046907 GO:0048500 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098796 GO:0098827 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP9-21

Protein Analysis

85

Amino Acids

10.12

Weight (kDa)

8.58

Isoelectric Point (pI)

37.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP9-21	PF05486	4 - 66	3.3e-15	Signal recognition particle 9 kDa protein (SRP9)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49100 AT3G49100
fragaria_vesca	FvH4_2g22310
malus_domestica	MD05G1204500.v1.1 MD10G1191500.v1.1
prunus_persica	Prupe.8G230800_v2.0.a1
pyrus_communis	pycom05g19080 pycom10g16510
rosa_chinensis	RchiOBHm_Chr6g0289311
rosa_laevigata	RLG00000012314
rosa_multiflora	Rmu_sc0001527.1_g000023
rosa_roxburghii	Rroxscaffold_7G00179350
rosa_rugosa	Rorug06G0202600
rosa_samantha	Rh6AG313500 Rh6BG321000 Rh6CG327200 Rh6DG312900
rosa_wichuraiana	Rw6G027100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	29
AciI	CCGC	1 cut(s)	55
AclWI	GGATC	2 cut(s)	33, 56
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	2 cut(s)	26, 149
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	2 cut(s)	8, 92
AjnI	CCWGG	2 cut(s)	17, 221
AloI	GAACNNNNNNTCC	2 cut(s)	99, 131
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
AlwI	GGATC	2 cut(s)	33, 56
AoxI	GGCC	1 cut(s)	219
ApoI	RAATTY	2 cut(s)	26, 149
AspLEI	GCGC	1 cut(s)	169
AspS9I	GGNCC	1 cut(s)	227
AsuHPI	GGTGA	2 cut(s)	118, 202
AvaII	GGWCC	1 cut(s)	227
BalI	TGGCCA	1 cut(s)	221
BccI	CCATC	3 cut(s)	98, 178, 211
BciT130I	CCWGG	2 cut(s)	19, 223
Bme1390I	CCNGG	2 cut(s)	19, 223
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	2 cut(s)	19, 223
BmsI	GCATC	1 cut(s)	163
BsaJI	CCNNGG	2 cut(s)	18, 222
Bse118I	RCCGGY	1 cut(s)	93
Bse3DI	GCAATG	1 cut(s)	97
BseBI	CCWGG	2 cut(s)	19, 223
BseDI	CCNNGG	2 cut(s)	18, 222
BseGI	GGATG	1 cut(s)	178
BseMI	GCAATG	1 cut(s)	97
BsgI	GTGCAG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	94
BslFI	GGGAC	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	221
Bsp143I	GATC	3 cut(s)	38, 61, 160
BspACI	CCGC	1 cut(s)	55
BspANI	GGCC	1 cut(s)	221
BspLI	GGNNCC	1 cut(s)	228
BspPI	GGATC	2 cut(s)	33, 56
BsrDI	GCAATG	1 cut(s)	97
BsrFI	RCCGGY	1 cut(s)	93
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	2 cut(s)	18, 222
BssMI	GATC	3 cut(s)	38, 61, 160
Bst2UI	CCWGG	2 cut(s)	19, 223
BstDEI	CTNAG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	3 cut(s)	41, 64, 163
BstMBI	GATC	3 cut(s)	38, 61, 160
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 173
BstNI	CCWGG	2 cut(s)	19, 223
BstSCI	CCNGG	2 cut(s)	17, 221
BsuRI	GGCC	1 cut(s)	221
BtgZI	GCGATG	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	178
CfoI	GCGC	1 cut(s)	169
Cfr10I	RCCGGY	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	227
Csp6I	GTAC	2 cut(s)	7, 91
CviJI	RGCY	2 cut(s)	112, 221
CviKI_1	RGCY	2 cut(s)	112, 221
CviQI	GTAC	2 cut(s)	7, 91
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	3 cut(s)	40, 63, 162
DpnII	GATC	3 cut(s)	38, 61, 160
DrdI	GACNNNNNNGTC	1 cut(s)	29
DseDI	GACNNNNNNGTC	1 cut(s)	29
EaeI	YGGCCR	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	227
EcoRI	GAATTC	1 cut(s)	26
EcoRII	CCWGG	2 cut(s)	17, 221
FaiI	YATR	3 cut(s)	81, 203, 239
FaqI	GGGAC	1 cut(s)	35
FokI	GGATG	1 cut(s)	185
GlaI	GCGC	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	221
HapII	CCGG	1 cut(s)	94
HhaI	GCGC	1 cut(s)	169
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HinfI	GANTC	2 cut(s)	68, 73
HpaII	CCGG	1 cut(s)	94
HphI	GGTGA	2 cut(s)	118, 202
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	2 cut(s)	65, 230
Hpy8I	GTNNAC	1 cut(s)	7
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	227
HpyCH4IV	ACGT	2 cut(s)	9, 14
HpyCH4V	TGCA	1 cut(s)	46
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 173
HpyF3I	CTNAG	1 cut(s)	177
HpySE526I	ACGT	2 cut(s)	9, 14
HspAI	GCGC	1 cut(s)	167
Kzo9I	GATC	3 cut(s)	38, 61, 160
LweI	GCATC	1 cut(s)	163
MaeII	ACGT	2 cut(s)	9, 14
MaeIII	GTNAC	2 cut(s)	10, 124
MalI	GATC	3 cut(s)	40, 63, 162
MboI	GATC	3 cut(s)	38, 61, 160
MboII	GAAGA	2 cut(s)	193, 199
MlsI	TGGCCA	1 cut(s)	221
MluCI	AATT	2 cut(s)	26, 149
MluNI	TGGCCA	1 cut(s)	221
MlyI	GAGTC	1 cut(s)	67
Mox20I	TGGCCA	1 cut(s)	221
MscI	TGGCCA	1 cut(s)	221
MseI	TTAA	1 cut(s)	153
MslI	CAYNNNNRTG	2 cut(s)	102, 215
Msp20I	TGGCCA	1 cut(s)	221
MspI	CCGG	1 cut(s)	94
MspR9I	CCNGG	2 cut(s)	19, 223
MvaI	CCWGG	2 cut(s)	19, 223
MwoI	GCNNNNNNNGC	2 cut(s)	43, 173
NdeII	GATC	3 cut(s)	38, 61, 160
NlaIV	GGNNCC	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	124
PcsI	WCGNNNNNNNCGW	2 cut(s)	30, 39
PfeI	GAWTC	1 cut(s)	68
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
PpuMI	RGGWCCY	1 cut(s)	227
Psp5II	RGGWCCY	1 cut(s)	227
Psp6I	CCWGG	2 cut(s)	17, 221
PspGI	CCWGG	2 cut(s)	17, 221
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	1 cut(s)	227
PspPPI	RGGWCCY	1 cut(s)	227
RsaI	GTAC	2 cut(s)	8, 92
RsaNI	GTAC	2 cut(s)	7, 91
RseI	CAYNNNNRTG	2 cut(s)	102, 215
SaqAI	TTAA	1 cut(s)	153
Sau3AI	GATC	3 cut(s)	38, 61, 160
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	1 cut(s)	67
ScrFI	CCNGG	2 cut(s)	19, 223
SetI	ASST	5 cut(s)	12, 17, 114, 215, 238
SfaNI	GCATC	1 cut(s)	163
SinI	GGWCC	1 cut(s)	227
SmiMI	CAYNNNNRTG	2 cut(s)	102, 215
Sse9I	AATT	2 cut(s)	26, 149
SsiI	CCGC	1 cut(s)	55
StyD4I	CCNGG	2 cut(s)	17, 221
TaiI	ACGT	2 cut(s)	12, 17
TaqI	TCGA	2 cut(s)	33, 71
TasI	AATT	2 cut(s)	26, 149
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	227
XapI	RAATTY	2 cut(s)	26, 149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.