Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012969

Physical Location & Seq

Genomic Coordinates Reverse (-)

19718614 .. 19720602

Gene Structure 1989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g16510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGTTTACATAACTTCTTGGGACGAGTTCGTCGAGCGATCCGTCCAGCTTTTCCGCGCCGATCCCGAATCTACTCGTTACGTGATGAAGTACCGGCATTGCGAGGGGAAATTGGTTCTCAAAGTCACCGATAATAAAGAGTGTCTGAAATTCAAAACAGACCAGGCACAAGACGCTAAGAAGATGGAGAAACTCAACAACATATTCTTCACTTTGATGTCTCGAGGTCCTGAAGCGGACCCATCAGAAGTTACTGGGAAAGACCAGATGGACGCACAGCCAAACAAGAAAGGACGGGGAAGAAAACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005047 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005785 GO:0005786 GO:0005789 GO:0005791 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006616 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042886 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045047 GO:0045184 GO:0046907 GO:0048500 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098796 GO:0098827 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP9-21

Protein Analysis

104

Amino Acids

12.04

Weight (kDa)

9.12

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP9-21	PF05486	5 - 66	2.5e-15	Signal recognition particle 9 kDa protein (SRP9)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49100 AT3G49100
fragaria_vesca	FvH4_2g22310
malus_domestica	MD05G1204500.v1.1 MD10G1191500.v1.1
prunus_persica	Prupe.8G230800_v2.0.a1
pyrus_communis	pycom05g19080 pycom10g16510
rosa_chinensis	RchiOBHm_Chr6g0289311
rosa_laevigata	RLG00000012314
rosa_multiflora	Rmu_sc0001527.1_g000023
rosa_roxburghii	Rroxscaffold_7G00179350
rosa_rugosa	Rorug06G0202600
rosa_samantha	Rh6AG313500 Rh6BG321000 Rh6CG327200 Rh6DG312900
rosa_wichuraiana	Rw6G027100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	29
AccII	CGCG	1 cut(s)	57
AciI	CCGC	2 cut(s)	55, 236
AclWI	GGATC	2 cut(s)	33, 56
AcsI	RAATTY	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	1 cut(s)	92
AgsI	TTSAA	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	162
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
Alw26I	GTCTC	1 cut(s)	225
AlwI	GGATC	2 cut(s)	33, 56
Ama87I	CYCGRG	1 cut(s)	222
ApoI	RAATTY	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	2 cut(s)	227, 238
AsuHPI	GGTGA	1 cut(s)	118
AvaI	CYCGRG	1 cut(s)	222
AvaII	GGWCC	2 cut(s)	227, 238
BccI	CCATC	3 cut(s)	178, 250, 262
BciT130I	CCWGG	1 cut(s)	164
BcoDI	GTCTC	1 cut(s)	225
Bme1390I	CCNGG	1 cut(s)	164
Bme18I	GGWCC	2 cut(s)	227, 238
BmeT110I	CYCGRG	1 cut(s)	222
BmgT120I	GGNCC	2 cut(s)	227, 238
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	1 cut(s)	164
BmrI	ACTGGG	1 cut(s)	264
BmuI	ACTGGG	1 cut(s)	264
BsaAI	YACGTR	1 cut(s)	82
Bse118I	RCCGGY	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	259
Bse3DI	GCAATG	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	164
BseMI	GCAATG	1 cut(s)	97
BseNI	ACTGG	1 cut(s)	259
Bsh1236I	CGCG	1 cut(s)	57
BsiHKCI	CYCGRG	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	94
BslFI	GGGAC	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	225
BsmFI	GGGAC	1 cut(s)	35
BsoBI	CYCGRG	1 cut(s)	222
Bsp143I	GATC	2 cut(s)	38, 61
BspACI	CCGC	2 cut(s)	55, 236
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	240
BspPI	GGATC	2 cut(s)	33, 56
BsrDI	GCAATG	1 cut(s)	97
BsrFI	RCCGGY	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	259
BssAI	RCCGGY	1 cut(s)	93
BssMI	GATC	2 cut(s)	38, 61
Bst2UI	CCWGG	1 cut(s)	164
BstBAI	YACGTR	1 cut(s)	82
BstDEI	CTNAG	1 cut(s)	177
BstFNI	CGCG	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	2 cut(s)	41, 64
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	2 cut(s)	38, 61
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstNI	CCWGG	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	162
BstUI	CGCG	1 cut(s)	57
CfoI	GCGC	1 cut(s)	59
Cfr10I	RCCGGY	1 cut(s)	93
Cfr13I	GGNCC	2 cut(s)	227, 238
CseI	GACGC	2 cut(s)	182, 281
Csp6I	GTAC	1 cut(s)	91
CviJI	RGCY	2 cut(s)	49, 280
CviKI_1	RGCY	2 cut(s)	49, 280
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	2 cut(s)	40, 63
DpnII	GATC	2 cut(s)	38, 61
DrdI	GACNNNNNNGTC	1 cut(s)	29
DseDI	GACNNNNNNGTC	1 cut(s)	29
Eco47I	GGWCC	2 cut(s)	227, 238
Eco57I	CTGAAG	1 cut(s)	252
Eco88I	CYCGRG	1 cut(s)	222
EcoO109I	RGGNCCY	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	162
FaiI	YATR	2 cut(s)	11, 203
FaqI	GGGAC	1 cut(s)	35
GlaI	GCGC	1 cut(s)	58
HapII	CCGG	1 cut(s)	94
HgaI	GACGC	2 cut(s)	182, 281
HhaI	GCGC	1 cut(s)	59
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	1 cut(s)	94
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	2 cut(s)	147, 247
Hpy188III	TCNNGA	3 cut(s)	65, 222, 230
Hpy8I	GTNNAC	1 cut(s)	7
Hpy99I	CGWCG	1 cut(s)	35
HpyCH4IV	ACGT	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	1 cut(s)	177
HpySE526I	ACGT	1 cut(s)	81
HspAI	GCGC	1 cut(s)	57
Kzo9I	GATC	2 cut(s)	38, 61
LpnPI	CCDG	7 cut(s)	59, 107, 149, 176, 240, 243, 278
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	3 cut(s)	77, 124, 250
MalI	GATC	2 cut(s)	40, 63
MboI	GATC	2 cut(s)	38, 61
MboII	GAAGA	3 cut(s)	193, 199, 312
MluCI	AATT	2 cut(s)	110, 149
MnlI	CCTC	2 cut(s)	97, 218
MslI	CAYNNNNRTG	1 cut(s)	215
MspI	CCGG	1 cut(s)	94
MspR9I	CCNGG	1 cut(s)	164
MvaI	CCWGG	1 cut(s)	164
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	173
NdeII	GATC	2 cut(s)	38, 61
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	124
PaeR7I	CTCGAG	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	2 cut(s)	30, 39
PfeI	GAWTC	1 cut(s)	68
Ppu21I	YACGTR	1 cut(s)	82
PpuMI	RGGWCCY	1 cut(s)	227
Psp5II	RGGWCCY	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	162
PspGI	CCWGG	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	2 cut(s)	227, 238
PspPPI	RGGWCCY	1 cut(s)	227
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	215
Sau3AI	GATC	2 cut(s)	38, 61
Sau96I	GGNCC	2 cut(s)	227, 238
ScrFI	CCNGG	1 cut(s)	164
SetI	ASST	3 cut(s)	51, 84, 229
Sfr274I	CTCGAG	1 cut(s)	222
SinI	GGWCC	2 cut(s)	227, 238
SlaI	CTCGAG	1 cut(s)	222
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
Sse9I	AATT	2 cut(s)	110, 149
SsiI	CCGC	2 cut(s)	55, 236
StyD4I	CCNGG	1 cut(s)	162
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	2 cut(s)	33, 223
TasI	AATT	2 cut(s)	110, 149
TfiI	GAWTC	1 cut(s)	68
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	1 cut(s)	31
VpaK11BI	GGWCC	2 cut(s)	227, 238
XapI	RAATTY	1 cut(s)	149
XhoI	CTCGAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.