Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0012969

Physical Location & Seq

Genomic Coordinates Reverse (-)

51406688 .. 51409111

Gene Structure 2424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG312900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGTGTACGTTACGTCCTGGGACGAATTCGTCGAGCGATCCGTGCAGCTGTTCCGCAACGATCCTGATTCGACTCGGTATGTGATGAAGTACCGGCATTGCGATGGAAAGCTGGTTCTCAAAGTCACCGATAATAAAGAGTGTCTGAAATTTAAGACAGATCAGGCGCAGGATGCTAAGAAGATGGAGAAACTGAACAACATATTCTTCACCTTGATGGCCAGGGGTCCTGAAGGTATATCACATTATCTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005047 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005785 GO:0005786 GO:0005789 GO:0005791 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006616 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042886 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045047 GO:0045184 GO:0046907 GO:0048500 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098796 GO:0098827 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP9-21

Protein Analysis

85

Amino Acids

10.12

Weight (kDa)

8.58

Isoelectric Point (pI)

37.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP9-21	PF05486	4 - 66	3.3e-15	Signal recognition particle 9 kDa protein (SRP9)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49100 AT3G49100
fragaria_vesca	FvH4_2g22310
malus_domestica	MD05G1204500.v1.1 MD10G1191500.v1.1
prunus_persica	Prupe.8G230800_v2.0.a1
pyrus_communis	pycom05g19080 pycom10g16510
rosa_chinensis	RchiOBHm_Chr6g0289311
rosa_laevigata	RLG00000012314
rosa_multiflora	Rmu_sc0001527.1_g000023
rosa_roxburghii	Rroxscaffold_7G00179350
rosa_rugosa	Rorug06G0202600
rosa_samantha	Rh6AG313500 Rh6BG321000 Rh6CG327200 Rh6DG312900
rosa_wichuraiana	Rw6G027100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	29
AciI	CCGC	1 cut(s)	55
AclWI	GGATC	2 cut(s)	33, 56
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	2 cut(s)	26, 149
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	2 cut(s)	8, 92
AjnI	CCWGG	2 cut(s)	17, 221
AloI	GAACNNNNNNTCC	2 cut(s)	99, 131
AluBI	AGCT	2 cut(s)	49, 112
AluI	AGCT	2 cut(s)	49, 112
AlwI	GGATC	2 cut(s)	33, 56
AoxI	GGCC	1 cut(s)	219
ApeKI	GCWGC	1 cut(s)	46
ApoI	RAATTY	2 cut(s)	26, 149
AspLEI	GCGC	1 cut(s)	169
AspS9I	GGNCC	1 cut(s)	227
AsuHPI	GGTGA	2 cut(s)	118, 202
AvaII	GGWCC	1 cut(s)	227
BalI	TGGCCA	1 cut(s)	221
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	3 cut(s)	98, 178, 211
BciT130I	CCWGG	2 cut(s)	19, 223
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
Bme1390I	CCNGG	2 cut(s)	19, 223
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	2 cut(s)	19, 223
BmsI	GCATC	1 cut(s)	163
BsaJI	CCNNGG	2 cut(s)	18, 222
Bse118I	RCCGGY	1 cut(s)	93
Bse3DI	GCAATG	1 cut(s)	97
BseBI	CCWGG	2 cut(s)	19, 223
BseDI	CCNNGG	2 cut(s)	18, 222
BseGI	GGATG	1 cut(s)	178
BseMI	GCAATG	1 cut(s)	97
BseXI	GCAGC	1 cut(s)	58
BsgI	GTGCAG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	94
BslFI	GGGAC	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	221
Bsp143I	GATC	3 cut(s)	38, 61, 160
BspACI	CCGC	1 cut(s)	55
BspANI	GGCC	1 cut(s)	221
BspLI	GGNNCC	1 cut(s)	228
BspPI	GGATC	2 cut(s)	33, 56
BsrDI	GCAATG	1 cut(s)	97
BsrFI	RCCGGY	1 cut(s)	93
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	2 cut(s)	18, 222
BssMI	GATC	3 cut(s)	38, 61, 160
Bst2UI	CCWGG	2 cut(s)	19, 223
BstDEI	CTNAG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	3 cut(s)	41, 64, 163
BstMBI	GATC	3 cut(s)	38, 61, 160
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 173
BstNI	CCWGG	2 cut(s)	19, 223
BstSCI	CCNGG	2 cut(s)	17, 221
BstV1I	GCAGC	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	221
BtgZI	GCGATG	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	178
CfoI	GCGC	1 cut(s)	169
Cfr10I	RCCGGY	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	227
Csp6I	GTAC	2 cut(s)	7, 91
CviJI	RGCY	3 cut(s)	49, 112, 221
CviKI_1	RGCY	3 cut(s)	49, 112, 221
CviQI	GTAC	2 cut(s)	7, 91
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	3 cut(s)	40, 63, 162
DpnII	GATC	3 cut(s)	38, 61, 160
DrdI	GACNNNNNNGTC	1 cut(s)	29
DseDI	GACNNNNNNGTC	1 cut(s)	29
EaeI	YGGCCR	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	227
EcoRI	GAATTC	1 cut(s)	26
EcoRII	CCWGG	2 cut(s)	17, 221
FaiI	YATR	3 cut(s)	81, 203, 239
FaqI	GGGAC	1 cut(s)	35
Fnu4HI	GCNGC	1 cut(s)	47
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	1 cut(s)	47
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	221
HapII	CCGG	1 cut(s)	94
HhaI	GCGC	1 cut(s)	169
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HinfI	GANTC	2 cut(s)	68, 73
HpaII	CCGG	1 cut(s)	94
HphI	GGTGA	2 cut(s)	118, 202
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	2 cut(s)	65, 230
Hpy8I	GTNNAC	1 cut(s)	7
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	227
HpyCH4IV	ACGT	2 cut(s)	9, 14
HpyCH4V	TGCA	1 cut(s)	46
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 173
HpyF3I	CTNAG	1 cut(s)	177
HpySE526I	ACGT	2 cut(s)	9, 14
HspAI	GCGC	1 cut(s)	167
Kzo9I	GATC	3 cut(s)	38, 61, 160
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	1 cut(s)	163
MaeII	ACGT	2 cut(s)	9, 14
MaeIII	GTNAC	2 cut(s)	10, 124
MalI	GATC	3 cut(s)	40, 63, 162
MboI	GATC	3 cut(s)	38, 61, 160
MboII	GAAGA	2 cut(s)	193, 199
MlsI	TGGCCA	1 cut(s)	221
MluCI	AATT	2 cut(s)	26, 149
MluNI	TGGCCA	1 cut(s)	221
MlyI	GAGTC	1 cut(s)	67
Mox20I	TGGCCA	1 cut(s)	221
MscI	TGGCCA	1 cut(s)	221
MseI	TTAA	1 cut(s)	153
MslI	CAYNNNNRTG	2 cut(s)	102, 215
Msp20I	TGGCCA	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	49
MspI	CCGG	1 cut(s)	94
MspR9I	CCNGG	2 cut(s)	19, 223
MvaI	CCWGG	2 cut(s)	19, 223
MwoI	GCNNNNNNNGC	2 cut(s)	43, 173
NdeII	GATC	3 cut(s)	38, 61, 160
NlaIV	GGNNCC	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	124
PcsI	WCGNNNNNNNCGW	2 cut(s)	30, 39
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	48
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
PpuMI	RGGWCCY	1 cut(s)	227
Psp5II	RGGWCCY	1 cut(s)	227
Psp6I	CCWGG	2 cut(s)	17, 221
PspGI	CCWGG	2 cut(s)	17, 221
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	1 cut(s)	227
PspPPI	RGGWCCY	1 cut(s)	227
PvuII	CAGCTG	1 cut(s)	49
RsaI	GTAC	2 cut(s)	8, 92
RsaNI	GTAC	2 cut(s)	7, 91
RseI	CAYNNNNRTG	2 cut(s)	102, 215
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	1 cut(s)	47
Sau3AI	GATC	3 cut(s)	38, 61, 160
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	1 cut(s)	67
ScrFI	CCNGG	2 cut(s)	19, 223
SetI	ASST	6 cut(s)	12, 17, 51, 114, 215, 238
SfaNI	GCATC	1 cut(s)	163
SinI	GGWCC	1 cut(s)	227
SmiMI	CAYNNNNRTG	2 cut(s)	102, 215
Sse9I	AATT	2 cut(s)	26, 149
SsiI	CCGC	1 cut(s)	55
StyD4I	CCNGG	2 cut(s)	17, 221
TaiI	ACGT	2 cut(s)	12, 17
TaqI	TCGA	2 cut(s)	33, 71
TasI	AATT	2 cut(s)	26, 149
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	227
XapI	RAATTY	2 cut(s)	26, 149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.