Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0012969

Physical Location & Seq

Genomic Coordinates Reverse (-)

28828843 .. 28830987

Gene Structure 2145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1191500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGTTTACATAACTTCCTGGGACGAGTTCGTCGAGCGATCCGTCCAGCTTTTCCGCGCCGATCCCGAATCTACTCGTTACGTGATGAAGTACCGGCATTGCGAGGGGAAATTGGTTCTCAAAGTCACCGATAATAAAGAGTGTCTGAAATTCAAAACAGACCAGGCACAAGACGCTAAGAAGATGGAGAAACTCAACAACATATTCTTCACTTTGATGTCCCGAGGTCCTGAAGCGGATCCATCAGAAGTTACTGGGAAAGACCAGATGGACGCACAGCCAACCAAGAAAGGACGGGGAAGAAAACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005047 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005785 GO:0005786 GO:0005789 GO:0005791 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006616 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042886 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045047 GO:0045184 GO:0046907 GO:0048500 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098796 GO:0098827 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP9-21

Protein Analysis

104

Amino Acids

12.02

Weight (kDa)

9.12

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP9-21	PF05486	5 - 66	2.5e-15	Signal recognition particle 9 kDa protein (SRP9)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49100 AT3G49100
fragaria_vesca	FvH4_2g22310
malus_domestica	MD05G1204500.v1.1 MD10G1191500.v1.1
prunus_persica	Prupe.8G230800_v2.0.a1
pyrus_communis	pycom05g19080 pycom10g16510
rosa_chinensis	RchiOBHm_Chr6g0289311
rosa_laevigata	RLG00000012314
rosa_multiflora	Rmu_sc0001527.1_g000023
rosa_roxburghii	Rroxscaffold_7G00179350
rosa_rugosa	Rorug06G0202600
rosa_samantha	Rh6AG313500 Rh6BG321000 Rh6CG327200 Rh6DG312900
rosa_wichuraiana	Rw6G027100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	29
AccII	CGCG	1 cut(s)	57
AciI	CCGC	2 cut(s)	55, 236
AclWI	GGATC	4 cut(s)	33, 56, 233, 246
AcsI	RAATTY	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	1 cut(s)	92
AgsI	TTSAA	1 cut(s)	154
AjnI	CCWGG	2 cut(s)	17, 162
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
AlwI	GGATC	4 cut(s)	33, 56, 233, 246
Ama87I	CYCGRG	1 cut(s)	222
ApoI	RAATTY	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	227
AsuHPI	GGTGA	1 cut(s)	118
AvaI	CYCGRG	1 cut(s)	222
AvaII	GGWCC	1 cut(s)	227
BamHI	GGATCC	1 cut(s)	238
BccI	CCATC	3 cut(s)	178, 250, 262
BciT130I	CCWGG	2 cut(s)	19, 164
Bme1390I	CCNGG	2 cut(s)	19, 164
Bme18I	GGWCC	1 cut(s)	227
BmeT110I	CYCGRG	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	2 cut(s)	19, 164
BmrI	ACTGGG	1 cut(s)	264
BmuI	ACTGGG	1 cut(s)	264
BsaAI	YACGTR	1 cut(s)	82
BsaJI	CCNNGG	2 cut(s)	18, 223
Bse118I	RCCGGY	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	259
Bse3DI	GCAATG	1 cut(s)	97
BseBI	CCWGG	2 cut(s)	19, 164
BseDI	CCNNGG	2 cut(s)	18, 223
BseMI	GCAATG	1 cut(s)	97
BseNI	ACTGG	1 cut(s)	259
Bsh1236I	CGCG	1 cut(s)	57
BsiHKCI	CYCGRG	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	94
BslFI	GGGAC	2 cut(s)	35, 205
BsmFI	GGGAC	2 cut(s)	35, 205
BsoBI	CYCGRG	1 cut(s)	222
Bsp143I	GATC	3 cut(s)	38, 61, 238
BspACI	CCGC	2 cut(s)	55, 236
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	240
BspPI	GGATC	4 cut(s)	33, 56, 233, 246
BsrDI	GCAATG	1 cut(s)	97
BsrFI	RCCGGY	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	259
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	2 cut(s)	18, 223
BssMI	GATC	3 cut(s)	38, 61, 238
Bst2UI	CCWGG	2 cut(s)	19, 164
BstBAI	YACGTR	1 cut(s)	82
BstDEI	CTNAG	1 cut(s)	177
BstFNI	CGCG	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	3 cut(s)	41, 64, 241
BstMBI	GATC	3 cut(s)	38, 61, 238
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstNI	CCWGG	2 cut(s)	19, 164
BstSCI	CCNGG	2 cut(s)	17, 162
BstUI	CGCG	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
CfoI	GCGC	1 cut(s)	59
Cfr10I	RCCGGY	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	227
CseI	GACGC	2 cut(s)	182, 281
Csp6I	GTAC	1 cut(s)	91
CviJI	RGCY	2 cut(s)	49, 280
CviKI_1	RGCY	2 cut(s)	49, 280
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	3 cut(s)	40, 63, 240
DpnII	GATC	3 cut(s)	38, 61, 238
DrdI	GACNNNNNNGTC	1 cut(s)	29
DseDI	GACNNNNNNGTC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	252
Eco88I	CYCGRG	1 cut(s)	222
EcoO109I	RGGNCCY	1 cut(s)	227
EcoRII	CCWGG	2 cut(s)	17, 162
FaiI	YATR	2 cut(s)	11, 203
FaqI	GGGAC	2 cut(s)	35, 205
GlaI	GCGC	1 cut(s)	58
HapII	CCGG	1 cut(s)	94
HgaI	GACGC	2 cut(s)	182, 281
HhaI	GCGC	1 cut(s)	59
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	1 cut(s)	94
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	2 cut(s)	147, 247
Hpy188III	TCNNGA	3 cut(s)	65, 222, 230
Hpy8I	GTNNAC	1 cut(s)	7
Hpy99I	CGWCG	1 cut(s)	35
HpyCH4IV	ACGT	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	1 cut(s)	177
HpySE526I	ACGT	1 cut(s)	81
HspAI	GCGC	1 cut(s)	57
Kzo9I	GATC	3 cut(s)	38, 61, 238
LpnPI	CCDG	9 cut(s)	4, 31, 59, 107, 149, 176, 240, 243, 278
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	3 cut(s)	77, 124, 250
MalI	GATC	3 cut(s)	40, 63, 240
MboI	GATC	3 cut(s)	38, 61, 238
MboII	GAAGA	3 cut(s)	193, 199, 312
MflI	RGATCY	1 cut(s)	238
MluCI	AATT	2 cut(s)	110, 149
MnlI	CCTC	2 cut(s)	97, 218
MslI	CAYNNNNRTG	1 cut(s)	215
MspI	CCGG	1 cut(s)	94
MspR9I	CCNGG	2 cut(s)	19, 164
MvaI	CCWGG	2 cut(s)	19, 164
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	173
NdeII	GATC	3 cut(s)	38, 61, 238
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	124
PcsI	WCGNNNNNNNCGW	2 cut(s)	30, 39
PfeI	GAWTC	1 cut(s)	68
Ppu21I	YACGTR	1 cut(s)	82
PpuMI	RGGWCCY	1 cut(s)	227
Psp5II	RGGWCCY	1 cut(s)	227
Psp6I	CCWGG	2 cut(s)	17, 162
PspGI	CCWGG	2 cut(s)	17, 162
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	227
PspPPI	RGGWCCY	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	215
Sau3AI	GATC	3 cut(s)	38, 61, 238
Sau96I	GGNCC	1 cut(s)	227
ScrFI	CCNGG	2 cut(s)	19, 164
SetI	ASST	3 cut(s)	51, 84, 229
SinI	GGWCC	1 cut(s)	227
SmiMI	CAYNNNNRTG	1 cut(s)	215
Sse9I	AATT	2 cut(s)	110, 149
SsiI	CCGC	2 cut(s)	55, 236
StyD4I	CCNGG	2 cut(s)	17, 162
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	1 cut(s)	33
TasI	AATT	2 cut(s)	110, 149
TfiI	GAWTC	1 cut(s)	68
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	227
XapI	RAATTY	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.