Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010452

Physical Location & Seq

Genomic Coordinates Forward (+)

32475888 .. 32480747

Gene Structure 4860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0202600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGTGCTGCAAAATGTCGTTATTGGAGATCAACTTGTGAATGCTGTTAAGCAGGTGAGTCTGCCTCAAGTAAACTTCCAAGAACCGAGTCTTGGACATGTTCTCTTCCAGGGACTCGACTATTCATCTGGAATATGGCAATTTGAAGGGTATGGCTTTGTGCCAAATGGAACCTCTGGTGCAACCGTAGCACAGATCCATGGGGCAGCTCAGGGCGCCACCACTATTATACTAAGAATCTACAATGGCGATATGAGGTATTATAGTGGAGACTTGGTGGCTACTGATCTTTACGATAAGTGGTTCAGACTTAACATTGTACATGATGTGGATGGAGGGACTGTGACTGTTTATATTGATGGACTCCGGAAATTTCAAGTGAAAGATAAAGGGCCAGGCGACTTGTACTTCAAATGTGGAGTTTATGCTGCTCCACGTAATATAAGCTATTACATGGAATCACGTTGGAAAGACATCAAAATATATAAAAAGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005047 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005785 GO:0005786 GO:0005789 GO:0005791 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006616 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042886 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045047 GO:0045184 GO:0046907 GO:0048500 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098796 GO:0098827 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP9-21

Protein Analysis

165

Amino Acids

18.49

Weight (kDa)

7.72

Isoelectric Point (pI)

29.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alginate_lyase2	PF08787	40 - 162	3.3e-16	Alginate lyase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30590
fragaria_vesca	FvH4_2g22300 FvH4_2g22300 FvH4_2g22300 FvH4_2g22300
malus_domestica	MD05G1204400.v1.1 MD10G1191400.v1.1
prunus_persica	Prupe.8G230700_v2.0.a1
pyrus_communis	pycom05g19070 pycom10g16500
rosa_chinensis	RchiOBHm_Chr6g0289301
rosa_laevigata	RLG00000012315
rosa_multiflora	Rmu_sc0001527.1_g000020
rosa_roxburghii	Rroxscaffold_7G00179360
rosa_rugosa	Rorug06G0202500 Rorug06G0202600
rosa_samantha	Rh6AG313400 Rh6BG320900 Rh6CG327100 Rh6DG312800
rosa_wichuraiana	Rw6G027090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccB1I	GGYRCC	1 cut(s)	215
AccIII	TCCGGA	1 cut(s)	366
AclWI	GGATC	1 cut(s)	190
AcsI	RAATTY	1 cut(s)	371
AcyI	GRCGYC	1 cut(s)	216
AfaI	GTAC	2 cut(s)	321, 407
AfiI	CCNNNNNNNGG	1 cut(s)	92
AflIII	ACRYGT	1 cut(s)	97
AgsI	TTSAA	3 cut(s)	146, 377, 412
AjnI	CCWGG	2 cut(s)	108, 394
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AluBI	AGCT	2 cut(s)	209, 447
AluI	AGCT	2 cut(s)	209, 447
Alw26I	GTCTC	1 cut(s)	264
AlwI	GGATC	1 cut(s)	190
Aor13HI	TCCGGA	1 cut(s)	366
AoxI	GGCC	1 cut(s)	392
ApeKI	GCWGC	3 cut(s)	7, 206, 428
ApoI	RAATTY	1 cut(s)	371
AspLEI	GCGC	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	392
AsuHPI	GGTGA	1 cut(s)	67
BanI	GGYRCC	1 cut(s)	215
BbvI	GCAGC	2 cut(s)	218, 415
BccI	CCATC	2 cut(s)	326, 353
BciT130I	CCWGG	2 cut(s)	110, 396
BcoDI	GTCTC	1 cut(s)	264
BfoI	RGCGCY	1 cut(s)	219
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	3 cut(s)	8, 207, 429
BlsI	GCNGC	3 cut(s)	9, 208, 430
Bme1390I	CCNGG	2 cut(s)	110, 396
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	2 cut(s)	172, 217
BmrFI	CCNGG	2 cut(s)	110, 396
BplI	GAGNNNNNCTC	2 cut(s)	49, 81
Bpu10I	CCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	51
BsaAI	YACGTR	1 cut(s)	437
BsaHI	GRCGYC	1 cut(s)	216
BsaJI	CCNNGG	2 cut(s)	109, 199
BsaWI	WCCGGW	1 cut(s)	366
BsaXI	ACNNNNNCTCC	4 cut(s)	261, 291, 327, 357
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
BseAI	TCCGGA	1 cut(s)	366
BseBI	CCWGG	2 cut(s)	110, 396
BseDI	CCNNGG	2 cut(s)	109, 199
BseGI	GGATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseMII	CTCAG	1 cut(s)	224
BseXI	GCAGC	2 cut(s)	218, 415
BshFI	GGCC	1 cut(s)	394
BshNI	GGYRCC	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	367
BslFI	GGGAC	2 cut(s)	126, 352
BslI	CCNNNNNNNGG	1 cut(s)	92
BsmAI	GTCTC	1 cut(s)	264
BsmFI	GGGAC	2 cut(s)	126, 352
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	394
Bsp13I	TCCGGA	1 cut(s)	366
Bsp1407I	TGTACA	1 cut(s)	319
Bsp143I	GATC	3 cut(s)	28, 195, 286
Bsp19I	CCATGG	1 cut(s)	199
BspANI	GGCC	1 cut(s)	394
BspCNI	CTCAG	1 cut(s)	223
BspEI	TCCGGA	1 cut(s)	366
BspLI	GGNNCC	2 cut(s)	172, 217
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	190
BspT107I	GGYRCC	1 cut(s)	215
BsrGI	TGTACA	1 cut(s)	319
BssECI	CCNNGG	2 cut(s)	109, 199
BssMI	GATC	3 cut(s)	28, 195, 286
BssNI	GRCGYC	1 cut(s)	216
BssT1I	CCWWGG	1 cut(s)	199
Bst2UI	CCWGG	2 cut(s)	110, 396
Bst4CI	ACNGT	3 cut(s)	187, 343, 349
Bst6I	CTCTTC	1 cut(s)	110
BstACI	GRCGYC	1 cut(s)	216
BstAUI	TGTACA	1 cut(s)	319
BstBAI	YACGTR	1 cut(s)	437
BstDEI	CTNAG	2 cut(s)	210, 233
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	1 cut(s)	337
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	3 cut(s)	31, 198, 289
BstMAI	GTCTC	1 cut(s)	264
BstMBI	GATC	3 cut(s)	28, 195, 286
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 215
BstNI	CCWGG	2 cut(s)	110, 396
BstNSI	RCATGY	1 cut(s)	101
BstSCI	CCNGG	2 cut(s)	108, 394
BstV1I	GCAGC	2 cut(s)	218, 415
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
BsuRI	GGCC	1 cut(s)	394
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	337
BveI	ACCTGC	1 cut(s)	43
CfoI	GCGC	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	392
Csp6I	GTAC	2 cut(s)	320, 406
CviAII	CATG	4 cut(s)	98, 200, 323, 454
CviJI	RGCY	5 cut(s)	156, 209, 281, 394, 447
CviKI_1	RGCY	5 cut(s)	156, 209, 281, 394, 447
CviQI	GTAC	2 cut(s)	320, 406
DdeI	CTNAG	2 cut(s)	210, 233
DinI	GGCGCC	1 cut(s)	217
DpnI	GATC	3 cut(s)	30, 197, 288
DpnII	GATC	3 cut(s)	28, 195, 286
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	199
EcoRII	CCWGG	2 cut(s)	108, 394
EcoT14I	CCWWGG	1 cut(s)	199
EgeI	GGCGCC	1 cut(s)	217
EheI	GGCGCC	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	199
FaeI	CATG	4 cut(s)	101, 203, 326, 457
FaqI	GGGAC	2 cut(s)	126, 352
FatI	CATG	4 cut(s)	97, 199, 322, 453
Fnu4HI	GCNGC	3 cut(s)	8, 207, 429
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	3 cut(s)	8, 207, 429
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	3 cut(s)	8, 207, 429
HaeII	RGCGCY	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	394
HapII	CCGG	1 cut(s)	367
HhaI	GCGC	1 cut(s)	218
Hin1I	GRCGYC	1 cut(s)	216
Hin1II	CATG	4 cut(s)	101, 203, 326, 457
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HinfI	GANTC	6 cut(s)	58, 88, 114, 237, 363, 458
HpaII	CCGG	1 cut(s)	367
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	308
Hpy188III	TCNNGA	2 cut(s)	129, 367
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	140
HpyCH4III	ACNGT	3 cut(s)	187, 343, 349
HpyCH4IV	ACGT	2 cut(s)	436, 463
HpyCH4V	TGCA	2 cut(s)	10, 182
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 215
HpyF3I	CTNAG	2 cut(s)	210, 233
HpySE526I	ACGT	2 cut(s)	436, 463
Hsp92I	GRCGYC	1 cut(s)	216
Hsp92II	CATG	4 cut(s)	101, 203, 326, 457
HspAI	GCGC	1 cut(s)	216
KasI	GGCGCC	1 cut(s)	215
Kpn2I	TCCGGA	1 cut(s)	366
Kzo9I	GATC	3 cut(s)	28, 195, 286
LmnI	GCTCC	1 cut(s)	436
LpnPI	CCDG	9 cut(s)	38, 95, 114, 122, 162, 197, 380, 381, 408
Lsp1109I	GCAGC	2 cut(s)	218, 415
MaeII	ACGT	2 cut(s)	436, 463
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	3 cut(s)	30, 197, 288
MboI	GATC	3 cut(s)	28, 195, 286
MboII	GAAGA	1 cut(s)	97
MflI	RGATCY	1 cut(s)	195
MluCI	AATT	2 cut(s)	140, 371
Mly113I	GGCGCC	1 cut(s)	216
MlyI	GAGTC	4 cut(s)	67, 97, 108, 357
MmeI	TCCRAC	1 cut(s)	446
MnlI	CCTC	4 cut(s)	75, 184, 249, 329
MroI	TCCGGA	1 cut(s)	366
MseI	TTAA	2 cut(s)	48, 312
MspI	CCGG	1 cut(s)	367
MspR9I	CCNGG	2 cut(s)	110, 396
Mva1269I	GAATGC	1 cut(s)	46
MvaI	CCWGG	2 cut(s)	110, 396
MwoI	GCNNNNNNNGC	2 cut(s)	188, 215
NarI	GGCGCC	1 cut(s)	216
NcoI	CCATGG	1 cut(s)	199
NdeII	GATC	3 cut(s)	28, 195, 286
NlaIII	CATG	4 cut(s)	101, 203, 326, 457
NlaIV	GGNNCC	2 cut(s)	172, 217
NmuCI	GTSAC	1 cut(s)	343
NspI	RCATGY	1 cut(s)	101
PaqCI	CACCTGC	1 cut(s)	43
PciI	ACATGT	1 cut(s)	97
PctI	GAATGC	1 cut(s)	46
PfeI	GAWTC	2 cut(s)	237, 458
PkrI	GCNGC	3 cut(s)	9, 208, 430
PleI	GAGTC	4 cut(s)	66, 96, 108, 357
PluTI	GGCGCC	1 cut(s)	219
PpsI	GAGTC	4 cut(s)	66, 96, 108, 357
Ppu21I	YACGTR	1 cut(s)	437
PscI	ACATGT	1 cut(s)	97
Psp6I	CCWGG	2 cut(s)	108, 394
PspGI	CCWGG	2 cut(s)	108, 394
PspN4I	GGNNCC	2 cut(s)	172, 217
PspPI	GGNCC	1 cut(s)	392
PsuI	RGATCY	1 cut(s)	195
RsaI	GTAC	2 cut(s)	321, 407
RsaNI	GTAC	2 cut(s)	320, 406
SaqAI	TTAA	2 cut(s)	48, 312
SatI	GCNGC	3 cut(s)	8, 207, 429
Sau3AI	GATC	3 cut(s)	28, 195, 286
Sau96I	GGNCC	1 cut(s)	392
SchI	GAGTC	4 cut(s)	67, 97, 108, 357
ScrFI	CCNGG	2 cut(s)	110, 396
SetI	ASST	7 cut(s)	57, 176, 211, 260, 439, 449, 466
SfoI	GGCGCC	1 cut(s)	217
SmlI	CTYRAG	1 cut(s)	66
SmoI	CTYRAG	1 cut(s)	66
Sse9I	AATT	2 cut(s)	140, 371
SspDI	GGCGCC	1 cut(s)	215
StyD4I	CCNGG	2 cut(s)	108, 394
StyI	CCWWGG	1 cut(s)	199
TaaI	ACNGT	3 cut(s)	187, 343, 349
TaiI	ACGT	2 cut(s)	439, 466
TaqI	TCGA	1 cut(s)	117
TasI	AATT	2 cut(s)	140, 371
TatI	WGTACW	2 cut(s)	319, 405
TfiI	GAWTC	2 cut(s)	237, 458
Tru1I	TTAA	2 cut(s)	48, 312
Tru9I	TTAA	2 cut(s)	48, 312
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	3 cut(s)	7, 206, 428
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	1 cut(s)	114
XapI	RAATTY	1 cut(s)	371
XceI	RCATGY	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.