Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010452

Physical Location & Seq

Genomic Coordinates Reverse (-)

20573325 .. 20576549

Gene Structure 3225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G230700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGAGGACGTCGAAGAAGCTAACAAAGCAGCTGTTGAAAGCTGCCATAGAGTTCTAAGTCTTTTTTCTCAGCCCCAAGATCAAGTTCAGTATACGAATTTGATGGTGGAAACTGGGAAGGCCGTGTCTAAGTTCAAAAAAGTTGTTTCCCTTCTCAATACTGGTTTAGGTCATGCAAGAGTTAGAAAGCGTAAGAAACTTCAAATTCCTTTTCCTGAAAGAATCCTCCTAGATAATCCCAATTGTATTACAGATTATCCATCCAAAACTCCTCACTTTATTCAGTCTAGCTTTCCTGAAAACCCAGTTCAAGATTTGGGTTTAAATGTTAAAAATTCCTTGTGTTTGGGAAACCCATCATTGGAATTAAGCACTAATGGGAAAAATCCGCTTCAACCGGCGCAACAAGCACCTCCAACACAGTATCATTTCCTTCAGCAACAACAGCAGCAACAGCAAGTGCAACAACAGCAACAGCAACAGCAGAGGTTGTTCCTTCAGCAGCAGCAGCAGCAGATGAAACACCAAGCAGAAATGATGTACCGTAGGAGCAATAGTGGCATAAACCTGAATTTTGATAGCTCTAGCTGCACACCTACGATGTCATCTACAAGATCCTTCATTTCTTCCTTGAGCATAGATGGAAGTGTGGCTAACTTTGATGGTAATTCCTTCCATTTGATTGGGGCTCCTCTCTCTTCGGATCAGAATTCACAACATAAGAGGAAGTGTTCTGCAAGGGGAGACGATGGGAGTGTGAAATGTGGTAGCAGTGGTAGATGTCACTGCTCAAAGAAGAGGAAACATAGAGTGAAAAGATCTATTAAGGTGCCTGCTATTAGTAACAAGCTTGCAGATATCCCTCCAGATGATTATTCATGGAGGAAGTATGGACAGAAGCCAATCAAAGGTTCTCCTCACCCTAGGGGATACTATAAATGTAGTAGCATGAGAGGTTGTCCAGCAAGGAAGCATGTTGAGAGGTGCTTGGAAGAACCCTCTATGCTTATTGTTACCTATGAAGGTGAGCATAACCACCCAAGGATACCATCACAATCAACAACGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

357

Amino Acids

40.13

Weight (kDa)

9.56

Isoelectric Point (pI)

59.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30590
fragaria_vesca	FvH4_2g22300 FvH4_2g22300 FvH4_2g22300 FvH4_2g22300
malus_domestica	MD05G1204400.v1.1 MD10G1191400.v1.1
prunus_persica	Prupe.8G230700_v2.0.a1
pyrus_communis	pycom05g19070 pycom10g16500
rosa_chinensis	RchiOBHm_Chr6g0289301
rosa_laevigata	RLG00000012315
rosa_multiflora	Rmu_sc0001527.1_g000020
rosa_roxburghii	Rroxscaffold_7G00179360
rosa_rugosa	Rorug06G0202500 Rorug06G0202600
rosa_samantha	Rh6AG313400 Rh6BG320900 Rh6CG327100 Rh6DG312800
rosa_wichuraiana	Rw6G027090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	12
AccB1I	GGYRCC	1 cut(s)	829
AccI	GTMKAC	1 cut(s)	92
AciI	CCGC	1 cut(s)	389
AclWI	GGATC	2 cut(s)	609, 711
AcsI	RAATTY	5 cut(s)	97, 204, 334, 571, 709
AcuI	CTGAAG	2 cut(s)	419, 482
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	1 cut(s)	542
AfiI	CCNNNNNNNGG	2 cut(s)	361, 908
AgsI	TTSAA	5 cut(s)	38, 136, 203, 311, 395
AjuI	GAANNNNNNNTTGG	4 cut(s)	69, 101, 895, 927
AluBI	AGCT	7 cut(s)	20, 32, 42, 291, 582, 588, 850
AluI	AGCT	7 cut(s)	20, 32, 42, 291, 582, 588, 850
Alw26I	GTCTC	1 cut(s)	738
AlwI	GGATC	2 cut(s)	609, 711
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	8 cut(s)	29, 42, 448, 502, 505, 508, 511, 588
ApoI	RAATTY	5 cut(s)	97, 204, 334, 571, 709
AspA2I	CCTAGG	1 cut(s)	923
AspLEI	GCGC	1 cut(s)	403
AsuHPI	GGTGA	2 cut(s)	911, 1037
AvrII	CCTAGG	1 cut(s)	923
BanI	GGYRCC	1 cut(s)	829
BanII	GRGCYC	1 cut(s)	691
BbvI	GCAGC	8 cut(s)	29, 41, 460, 514, 517, 520, 523, 575
BccI	CCATC	7 cut(s)	97, 268, 364, 635, 656, 743, 1057
BceAI	ACGGC	1 cut(s)	107
BciVI	GTATCC	2 cut(s)	923, 1038
BcoDI	GTCTC	1 cut(s)	738
BfaI	CTAG	4 cut(s)	230, 288, 585, 924
BfuI	GTATCC	2 cut(s)	923, 1038
BglII	AGATCT	1 cut(s)	818
BisI	GCNGC	8 cut(s)	30, 43, 449, 503, 506, 509, 512, 589
BlnI	CCTAGG	1 cut(s)	923
BlsI	GCNGC	8 cut(s)	31, 44, 450, 504, 507, 510, 513, 590
BmiI	GGNNCC	2 cut(s)	690, 831
BmrI	ACTGGG	2 cut(s)	123, 299
BmuI	ACTGGG	2 cut(s)	123, 299
BpmI	CTGGAG	1 cut(s)	849
BpuEI	CTTGAG	1 cut(s)	652
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	923, 1040
BsaXI	ACNNNNNCTCC	2 cut(s)	541, 571
Bsc4I	CCNNNNNNNGG	2 cut(s)	361, 908
Bse118I	RCCGGY	1 cut(s)	397
Bse1I	ACTGG	3 cut(s)	118, 166, 305
BseDI	CCNNGG	2 cut(s)	923, 1040
BseGI	GGATG	1 cut(s)	260
BseLI	CCNNNNNNNGG	2 cut(s)	361, 908
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	3 cut(s)	118, 166, 305
BseRI	GAGGAG	3 cut(s)	261, 681, 906
BseXI	GCAGC	8 cut(s)	29, 41, 460, 514, 517, 520, 523, 575
BsgI	GTGCAG	1 cut(s)	574
BshFI	GGCC	1 cut(s)	122
BshNI	GGYRCC	1 cut(s)	829
BsiSI	CCGG	1 cut(s)	398
BslI	CCNNNNNNNGG	2 cut(s)	361, 908
BsmAI	GTCTC	1 cut(s)	738
BsmBI	CGTCTC	1 cut(s)	738
BsnI	GGCC	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	691
Bsp143I	GATC	4 cut(s)	79, 614, 703, 818
BspACI	CCGC	1 cut(s)	389
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	82
BspLI	GGNNCC	2 cut(s)	690, 831
BspPI	GGATC	2 cut(s)	609, 711
BspT107I	GGYRCC	1 cut(s)	829
BsrFI	RCCGGY	1 cut(s)	397
BsrI	ACTGG	3 cut(s)	118, 166, 305
BssAI	RCCGGY	1 cut(s)	397
BssECI	CCNNGG	2 cut(s)	923, 1040
BssMI	GATC	4 cut(s)	79, 614, 703, 818
BssNAI	GTATAC	1 cut(s)	93
BssNI	GRCGYC	1 cut(s)	9
BssT1I	CCWWGG	2 cut(s)	923, 1040
Bst1107I	GTATAC	1 cut(s)	93
Bst4CI	ACNGT	2 cut(s)	423, 545
Bst6I	CTCTTC	2 cut(s)	703, 791
BstACI	GRCGYC	1 cut(s)	9
BstC8I	GCNNGC	2 cut(s)	834, 852
BstDEI	CTNAG	3 cut(s)	56, 69, 129
BstF5I	GGATG	1 cut(s)	260
BstHHI	GCGC	1 cut(s)	403
BstKTI	GATC	4 cut(s)	82, 617, 706, 821
BstMAI	GTCTC	1 cut(s)	738
BstMBI	GATC	4 cut(s)	79, 614, 703, 818
BstMWI	GCNNNNNNNGC	9 cut(s)	26, 407, 445, 454, 469, 508, 511, 558, 588
BstNSI	RCATGY	1 cut(s)	977
BstV1I	GCAGC	8 cut(s)	29, 41, 460, 514, 517, 520, 523, 575
BstX2I	RGATCY	2 cut(s)	614, 818
BstXI	CCANNNNNNTGG	1 cut(s)	683
BstYI	RGATCY	2 cut(s)	614, 818
BstZ17I	GTATAC	1 cut(s)	93
BsuI	GTATCC	2 cut(s)	923, 1038
BsuRI	GGCC	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	260
BtsI	GCAGTG	2 cut(s)	778, 784
BtsIMutI	CAGTG	2 cut(s)	778, 784
Cac8I	GCNNGC	2 cut(s)	834, 852
CfoI	GCGC	1 cut(s)	403
Cfr10I	RCCGGY	1 cut(s)	397
Csp6I	GTAC	1 cut(s)	541
CviAII	CATG	5 cut(s)	173, 879, 949, 974, 1068
CviQI	GTAC	1 cut(s)	541
DdeI	CTNAG	3 cut(s)	56, 69, 129
DpnI	GATC	4 cut(s)	81, 616, 705, 820
DpnII	GATC	4 cut(s)	79, 614, 703, 818
DraI	TTTAAA	1 cut(s)	324
Eam1104I	CTCTTC	2 cut(s)	703, 791
EarI	CTCTTC	2 cut(s)	703, 791
Eco130I	CCWWGG	2 cut(s)	923, 1040
Eco24I	GRGCYC	1 cut(s)	691
Eco32I	GATATC	1 cut(s)	859
Eco57I	CTGAAG	2 cut(s)	419, 482
EcoRI	GAATTC	1 cut(s)	709
EcoRV	GATATC	1 cut(s)	859
EcoT14I	CCWWGG	2 cut(s)	923, 1040
EcoT38I	GRGCYC	1 cut(s)	691
ErhI	CCWWGG	2 cut(s)	923, 1040
Esp3I	CGTCTC	1 cut(s)	738
FaeI	CATG	5 cut(s)	176, 882, 952, 977, 1071
FatI	CATG	5 cut(s)	172, 878, 948, 973, 1067
FblI	GTMKAC	1 cut(s)	92
Fnu4HI	GCNGC	8 cut(s)	30, 43, 449, 503, 506, 509, 512, 589
FokI	GGATG	1 cut(s)	247
FriOI	GRGCYC	1 cut(s)	691
Fsp4HI	GCNGC	8 cut(s)	30, 43, 449, 503, 506, 509, 512, 589
FspBI	CTAG	4 cut(s)	230, 288, 585, 924
GlaI	GCGC	1 cut(s)	402
GluI	GCNGC	8 cut(s)	30, 43, 449, 503, 506, 509, 512, 589
GsuI	CTGGAG	1 cut(s)	849
HaeIII	GGCC	1 cut(s)	122
HapII	CCGG	1 cut(s)	398
HhaI	GCGC	1 cut(s)	403
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	5 cut(s)	176, 882, 952, 977, 1071
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HindIII	AAGCTT	1 cut(s)	848
HinfI	GANTC	1 cut(s)	222
HpaII	CCGG	1 cut(s)	398
HphI	GGTGA	2 cut(s)	911, 1037
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188I	TCNGA	2 cut(s)	703, 708
Hpy188III	TCNNGA	4 cut(s)	215, 296, 311, 866
Hpy8I	GTNNAC	1 cut(s)	93
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	7 cut(s)	112, 161, 443, 506, 628, 682, 1016
HpyCH4III	ACNGT	2 cut(s)	423, 545
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	5 cut(s)	176, 463, 591, 737, 854
HpyF10VI	GCNNNNNNNGC	9 cut(s)	26, 407, 445, 454, 469, 508, 511, 558, 588
HpyF3I	CTNAG	3 cut(s)	56, 69, 129
HpySE526I	ACGT	1 cut(s)	9
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	5 cut(s)	176, 882, 952, 977, 1071
HspAI	GCGC	1 cut(s)	401
Kzo9I	GATC	4 cut(s)	79, 614, 703, 818
LmnI	GCTCC	2 cut(s)	549, 694
Lsp1109I	GCAGC	8 cut(s)	29, 41, 460, 514, 517, 520, 523, 575
MaeI	CTAG	4 cut(s)	230, 288, 585, 924
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	3 cut(s)	782, 842, 1012
MalI	GATC	4 cut(s)	81, 616, 705, 820
MboI	GATC	4 cut(s)	79, 614, 703, 818
MboII	GAAGA	5 cut(s)	26, 618, 690, 808, 1004
MfeI	CAATTG	1 cut(s)	241
MflI	RGATCY	2 cut(s)	614, 818
MhlI	GDGCHC	1 cut(s)	691
MluCI	AATT	8 cut(s)	97, 204, 241, 334, 365, 571, 667, 709
MmeI	TCCRAC	1 cut(s)	440
MseI	TTAA	4 cut(s)	323, 330, 368, 825
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	1 cut(s)	398
MunI	CAATTG	1 cut(s)	241
MwoI	GCNNNNNNNGC	9 cut(s)	26, 407, 445, 454, 469, 508, 511, 558, 588
NdeII	GATC	4 cut(s)	79, 614, 703, 818
NlaIII	CATG	5 cut(s)	176, 882, 952, 977, 1071
NlaIV	GGNNCC	2 cut(s)	690, 831
NmuCI	GTSAC	1 cut(s)	782
NspI	RCATGY	1 cut(s)	977
PfeI	GAWTC	1 cut(s)	222
PkrI	GCNGC	8 cut(s)	31, 44, 450, 504, 507, 510, 513, 590
PspN4I	GGNNCC	2 cut(s)	690, 831
PsuI	RGATCY	2 cut(s)	614, 818
PvuII	CAGCTG	1 cut(s)	32
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
SaqAI	TTAA	4 cut(s)	323, 330, 368, 825
SatI	GCNGC	8 cut(s)	30, 43, 449, 503, 506, 509, 512, 589
Sau3AI	GATC	4 cut(s)	79, 614, 703, 818
SduI	GDGCHC	1 cut(s)	691
SmlI	CTYRAG	1 cut(s)	631
SmoI	CTYRAG	1 cut(s)	631
Sse9I	AATT	8 cut(s)	97, 204, 241, 334, 365, 571, 667, 709
SsiI	CCGC	1 cut(s)	389
SspMI	CTAG	4 cut(s)	230, 288, 585, 924
StyI	CCWWGG	2 cut(s)	923, 1040
TaaI	ACNGT	2 cut(s)	423, 545
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	1 cut(s)	12
TasI	AATT	8 cut(s)	97, 204, 241, 334, 365, 571, 667, 709
TfiI	GAWTC	1 cut(s)	222
Tru1I	TTAA	4 cut(s)	323, 330, 368, 825
Tru9I	TTAA	4 cut(s)	323, 330, 368, 825
TscAI	CASTG	2 cut(s)	778, 791
TseFI	GTSAC	1 cut(s)	782
TseI	GCWGC	8 cut(s)	29, 42, 448, 502, 505, 508, 511, 588
Tsp45I	GTSAC	1 cut(s)	782
TspDTI	ATGAA	4 cut(s)	533, 610, 867, 1035
TspRI	CASTG	2 cut(s)	778, 791
XapI	RAATTY	5 cut(s)	97, 204, 334, 571, 709
XceI	RCATGY	1 cut(s)	977
XmaJI	CCTAGG	1 cut(s)	923
XmiI	GTMKAC	1 cut(s)	92
XspI	CTAG	4 cut(s)	230, 288, 585, 924
ZraI	GACGTC	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.