Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010452

Physical Location & Seq

Genomic Coordinates Forward (+)

18965955 .. 18969497

Gene Structure 3543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00179360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGAGGAAGTTGAAGAAGCTAACAAAGCTGCTGTTGCAAGCTGCCATAGGGTTTTGAATCTGTTGTCTCAGCCACAAGATCAAGTTCAGTTTAGGAATTTGAAGGCGGAAACTGGGGAGGCTGTGTTTAGGTTCAAGAAAGTTGCTTCTCTTCTCAATACTGGTTTGGGTCATGCTAGAGTTAGAAAGCTCAAGAAACTTCAAATCCCTTTTCCTGAAAGTGTCCTCTTAGATAATCCTAATTGTACAACAGACCATCACTCTAAAAATCCTCATTTTCTTCAATCTAGATTTGCTGAGAACCCAACTCAAGAATTGAGTTTAAATGTTAGAAATTCCTTAAGTTTGGGAAACCCCTCTTTGGAATTGAGCACTAATGGGAAAACCCCAATTCAACTACAACAAGCACTTCCAGCGCACTATCACTTCCTTCAGCAGCAACAGCAGCATCAACAACAACAACAGCAGCAGAGGCTATTGCTTCAGCAGCAGCATATGAAACAACAAGCGGAAATGATGTACCGGAGGAGCAATAGTGGCATAAACCTCAACTTTGATAGCTCTAGCTGCACACCCACAATGTCATCTACAAGGTCCTTCATTTCTTCCTTGAGCATAGATGGAAGCGTGGCTAACTTGGAGGGTAACTCCTTCCATTTGATTGGAGCTCCTATCTCTTCTTCGGATCAAAATTCACAACATAAGAGGAAGTGTTCCGCGAGGGGGATGACGGCAGTGCAAAATGCGGTAGCAGTGGTAGGTGTCACTGCTCAAAGAAGAGGAAACACAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

264

Amino Acids

29.35

Weight (kDa)

9.69

Isoelectric Point (pI)

57.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30590
fragaria_vesca	FvH4_2g22300 FvH4_2g22300 FvH4_2g22300 FvH4_2g22300
malus_domestica	MD05G1204400.v1.1 MD10G1191400.v1.1
prunus_persica	Prupe.8G230700_v2.0.a1
pyrus_communis	pycom05g19070 pycom10g16500
rosa_chinensis	RchiOBHm_Chr6g0289301
rosa_laevigata	RLG00000012315
rosa_multiflora	Rmu_sc0001527.1_g000020
rosa_roxburghii	Rroxscaffold_7G00179360
rosa_rugosa	Rorug06G0202500 Rorug06G0202600
rosa_samantha	Rh6AG313400 Rh6BG320900 Rh6CG327100 Rh6DG312800
rosa_wichuraiana	Rw6G027090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	719
AciI	CCGC	4 cut(s)	107, 509, 717, 746
AclWI	GGATC	1 cut(s)	693
AcsI	RAATTY	3 cut(s)	97, 334, 691
AcuI	CTGAAG	2 cut(s)	416, 467
AdeI	CACNNNGTG	1 cut(s)	792
AfaI	GTAC	2 cut(s)	247, 521
AfiI	CCNNNNNNNGG	2 cut(s)	361, 723
AflII	CTTAAG	1 cut(s)	340
AgsI	TTSAA	7 cut(s)	14, 58, 103, 136, 203, 284, 395
AluBI	AGCT	7 cut(s)	20, 29, 42, 190, 561, 567, 668
AluI	AGCT	7 cut(s)	20, 29, 42, 190, 561, 567, 668
Alw21I	GWGCWC	2 cut(s)	374, 670
Alw26I	GTCTC	1 cut(s)	72
AlwI	GGATC	1 cut(s)	693
ApeKI	GCWGC	8 cut(s)	29, 42, 436, 445, 466, 487, 490, 567
ApoI	RAATTY	3 cut(s)	97, 334, 691
AspLEI	GCGC	1 cut(s)	418
AspS9I	GGNCC	1 cut(s)	594
AvaII	GGWCC	1 cut(s)	594
BanII	GRGCYC	1 cut(s)	670
Bbv12I	GWGCWC	2 cut(s)	374, 670
BbvI	GCAGC	8 cut(s)	16, 29, 448, 457, 478, 499, 502, 554
BccI	CCATC	2 cut(s)	264, 614
BceAI	ACGGC	1 cut(s)	747
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	3 cut(s)	177, 288, 564
BfrI	CTTAAG	1 cut(s)	340
BisI	GCNGC	8 cut(s)	30, 43, 437, 446, 467, 488, 491, 568
BlsI	GCNGC	8 cut(s)	31, 44, 438, 447, 468, 489, 492, 569
Bme18I	GGWCC	1 cut(s)	594
BmgT120I	GGNCC	1 cut(s)	594
BmrI	ACTGGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	457
BmuI	ACTGGG	1 cut(s)	123
BplI	GAGNNNNNCTC	2 cut(s)	632, 664
BpuEI	CTTGAG	3 cut(s)	176, 294, 631
BsaWI	WCCGGW	1 cut(s)	522
BsaXI	ACNNNNNCTCC	4 cut(s)	110, 140, 520, 550
Bsc4I	CCNNNNNNNGG	2 cut(s)	361, 723
Bse1I	ACTGG	2 cut(s)	118, 166
BseGI	GGATG	1 cut(s)	732
BseLI	CCNNNNNNNGG	2 cut(s)	361, 723
BseMII	CTCAG	2 cut(s)	83, 288
BseNI	ACTGG	2 cut(s)	118, 166
BseRI	GAGGAG	1 cut(s)	541
BseXI	GCAGC	8 cut(s)	16, 29, 448, 457, 478, 499, 502, 554
BsgI	GTGCAG	1 cut(s)	553
Bsh1236I	CGCG	1 cut(s)	719
BsiHKAI	GWGCWC	2 cut(s)	374, 670
BsiSI	CCGG	1 cut(s)	523
BslI	CCNNNNNNNGG	2 cut(s)	361, 723
BsmAI	GTCTC	1 cut(s)	72
Bsp1286I	GDGCHC	2 cut(s)	374, 670
Bsp1407I	TGTACA	1 cut(s)	245
Bsp143I	GATC	2 cut(s)	79, 685
BspACI	CCGC	4 cut(s)	107, 509, 717, 746
BspCNI	CTCAG	2 cut(s)	82, 289
BspFNI	CGCG	1 cut(s)	719
BspPI	GGATC	1 cut(s)	693
BspTI	CTTAAG	1 cut(s)	340
BsrGI	TGTACA	1 cut(s)	245
BsrI	ACTGG	2 cut(s)	118, 166
BssMI	GATC	2 cut(s)	79, 685
Bst6I	CTCTTC	3 cut(s)	156, 682, 772
BstAFI	CTTAAG	1 cut(s)	340
BstAUI	TGTACA	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	3 cut(s)	69, 229, 297
BstF5I	GGATG	1 cut(s)	732
BstFNI	CGCG	1 cut(s)	719
BstHHI	GCGC	1 cut(s)	418
BstKTI	GATC	2 cut(s)	82, 688
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	2 cut(s)	79, 685
BstMWI	GCNNNNNNNGC	9 cut(s)	26, 35, 413, 442, 445, 472, 487, 537, 567
BstUI	CGCG	1 cut(s)	719
BstV1I	GCAGC	8 cut(s)	16, 29, 448, 457, 478, 499, 502, 554
BstXI	CCANNNNNNTGG	1 cut(s)	662
BtsCI	GGATG	1 cut(s)	732
BtsI	GCAGTG	3 cut(s)	741, 759, 765
BtsIMutI	CAGTG	3 cut(s)	741, 759, 765
Cac8I	GCNNGC	1 cut(s)	40
CfoI	GCGC	1 cut(s)	418
Cfr13I	GGNCC	1 cut(s)	594
Csp6I	GTAC	2 cut(s)	246, 520
CviAII	CATG	1 cut(s)	173
CviQI	GTAC	2 cut(s)	246, 520
DdeI	CTNAG	3 cut(s)	69, 229, 297
DpnI	GATC	2 cut(s)	81, 687
DpnII	GATC	2 cut(s)	79, 685
DraI	TTTAAA	1 cut(s)	324
DraIII	CACNNNGTG	1 cut(s)	792
Eam1104I	CTCTTC	3 cut(s)	156, 682, 772
EarI	CTCTTC	3 cut(s)	156, 682, 772
EciI	GGCGGA	1 cut(s)	122
Ecl136II	GAGCTC	1 cut(s)	668
Eco24I	GRGCYC	1 cut(s)	670
Eco47I	GGWCC	1 cut(s)	594
Eco53kI	GAGCTC	1 cut(s)	668
Eco57I	CTGAAG	2 cut(s)	416, 467
EcoICRI	GAGCTC	1 cut(s)	668
EcoO109I	RGGNCCY	1 cut(s)	594
EcoT38I	GRGCYC	1 cut(s)	670
FaeI	CATG	1 cut(s)	176
FaiI	YATR	7 cut(s)	48, 174, 495, 497, 542, 617, 702
FatI	CATG	1 cut(s)	172
FauNDI	CATATG	1 cut(s)	495
Fnu4HI	GCNGC	8 cut(s)	30, 43, 437, 446, 467, 488, 491, 568
FokI	GGATG	1 cut(s)	739
FriOI	GRGCYC	1 cut(s)	670
Fsp4HI	GCNGC	8 cut(s)	30, 43, 437, 446, 467, 488, 491, 568
FspBI	CTAG	3 cut(s)	177, 288, 564
GlaI	GCGC	1 cut(s)	417
GluI	GCNGC	8 cut(s)	30, 43, 437, 446, 467, 488, 491, 568
HapII	CCGG	1 cut(s)	523
HhaI	GCGC	1 cut(s)	418
Hin1II	CATG	1 cut(s)	176
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HinfI	GANTC	1 cut(s)	58
HpaII	CCGG	1 cut(s)	523
Hpy188I	TCNGA	1 cut(s)	685
Hpy188III	TCNNGA	5 cut(s)	136, 193, 215, 288, 311
HpyAV	CCTTC	4 cut(s)	97, 440, 607, 661
HpyCH4V	TGCA	3 cut(s)	38, 570, 739
HpyF10VI	GCNNNNNNNGC	9 cut(s)	26, 35, 413, 442, 445, 472, 487, 537, 567
HpyF3I	CTNAG	3 cut(s)	69, 229, 297
Hsp92II	CATG	1 cut(s)	176
HspAI	GCGC	1 cut(s)	416
Kzo9I	GATC	2 cut(s)	79, 685
LmnI	GCTCC	3 cut(s)	528, 665, 673
LpnPI	CCDG	6 cut(s)	99, 147, 228, 426, 536, 774
Lsp1109I	GCAGC	8 cut(s)	16, 29, 448, 457, 478, 499, 502, 554
LweI	GCATC	1 cut(s)	457
MaeI	CTAG	3 cut(s)	177, 288, 564
MaeIII	GTNAC	2 cut(s)	644, 763
MalI	GATC	2 cut(s)	81, 687
MboI	GATC	2 cut(s)	79, 685
MboII	GAAGA	7 cut(s)	26, 143, 272, 597, 669, 672, 789
MhlI	GDGCHC	2 cut(s)	374, 670
MluCI	AATT	7 cut(s)	97, 241, 314, 334, 365, 390, 691
MseI	TTAA	2 cut(s)	323, 341
MspCI	CTTAAG	1 cut(s)	340
MspI	CCGG	1 cut(s)	523
MvnI	CGCG	1 cut(s)	719
MwoI	GCNNNNNNNGC	9 cut(s)	26, 35, 413, 442, 445, 472, 487, 537, 567
NdeI	CATATG	1 cut(s)	495
NdeII	GATC	2 cut(s)	79, 685
NlaIII	CATG	1 cut(s)	176
NmuCI	GTSAC	1 cut(s)	763
PfeI	GAWTC	1 cut(s)	58
PkrI	GCNGC	8 cut(s)	31, 44, 438, 447, 468, 489, 492, 569
PpuMI	RGGWCCY	1 cut(s)	594
Psp124BI	GAGCTC	1 cut(s)	670
Psp5II	RGGWCCY	1 cut(s)	594
PspPI	GGNCC	1 cut(s)	594
PspPPI	RGGWCCY	1 cut(s)	594
RsaI	GTAC	2 cut(s)	247, 521
RsaNI	GTAC	2 cut(s)	246, 520
SacI	GAGCTC	1 cut(s)	670
SaqAI	TTAA	2 cut(s)	323, 341
SatI	GCNGC	8 cut(s)	30, 43, 437, 446, 467, 488, 491, 568
Sau3AI	GATC	2 cut(s)	79, 685
Sau96I	GGNCC	1 cut(s)	594
SduI	GDGCHC	2 cut(s)	374, 670
SfaNI	GCATC	1 cut(s)	457
SinI	GGWCC	1 cut(s)	594
SmlI	CTYRAG	4 cut(s)	191, 309, 340, 610
SmoI	CTYRAG	4 cut(s)	191, 309, 340, 610
Sse9I	AATT	7 cut(s)	97, 241, 314, 334, 365, 390, 691
SsiI	CCGC	4 cut(s)	107, 509, 717, 746
SspMI	CTAG	3 cut(s)	177, 288, 564
SstI	GAGCTC	1 cut(s)	670
TasI	AATT	7 cut(s)	97, 241, 314, 334, 365, 390, 691
TatI	WGTACW	1 cut(s)	245
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	2 cut(s)	323, 341
Tru9I	TTAA	2 cut(s)	323, 341
TscAI	CASTG	3 cut(s)	741, 759, 772
TseFI	GTSAC	1 cut(s)	763
TseI	GCWGC	8 cut(s)	29, 42, 436, 445, 466, 487, 490, 567
Tsp45I	GTSAC	1 cut(s)	763
TspDTI	ATGAA	2 cut(s)	512, 589
TspRI	CASTG	3 cut(s)	741, 759, 772
Vha464I	CTTAAG	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	594
XapI	RAATTY	3 cut(s)	97, 334, 691
XbaI	TCTAGA	1 cut(s)	287
XspI	CTAG	3 cut(s)	177, 288, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.