Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010452

Physical Location & Seq

Genomic Coordinates Forward (+)

17417072 .. 17420179

Gene Structure 3108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012315

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGTCCCTCTTCACAGGTTTGACAGCACCAACTCCAACAAAGGGTAGAGGTTTTGATATGGAGGAAGTTGAAGAAGCTAACAAGGCTGCTGTTGCAAGCTGCCATAGAGTTTTGAATCTGTTGTCTCAGCCACAAGATCAAGTTCAGTTTAGGAATTTAAAGGCGGAAACTGGGGAGGCTGTGTTTAGGTTCAAGAAAGTTTCTTCTCTTCTCAATACTGGTTTGGGTCATGCTAGAGTTAGAAAACTCAAGAAACTTCAAATTCCTTTTCCTGAAAGTGTCCTCTTAGATAATCCTAATTGTACAACAGACCATCACTCTAAAAATCCTCATTTTCTTCAATCTAGATTTGCTGAGAACCCAACTCAAGATTTGAGTTTAAATGTTAGAAATTCCTTAAGTTTGGGAAACCCCTCTTTGGAATTGAGCACTAATGGGAAAACCCCAATTCAACTACAACAAGCACTTCCAGCGCACTATCACTTCCTTCAGCAGCAACAGCAGCATCAACAACAGCAGCAGCAGAGGCTATTGCTTCAGCAGCAGCATATGAAACAACAAGCGGAAATGATGTACCGGAGGAGCAATAGTGGCATAAACCTCAACTTTGATAGCTCTAGCTGCACACCCACAATGTCATCCACAAGGTCCTTCATTTCTTCCTTAAGCATAGATGGAAGCGTGGCTAACTTGGAGGGTAACTCCTTCCATTTGATTGGAGCCCCTATCTCTTCTTCGGATCAAAATTCACAACATAAGAGGAAGTGTTCCGCGAGGGGGGATGACGGCAGTGCAAAATGTGGTAGCAGTGGTAGGTGTCACTGCTCAAAGAAGAGGAAACATAGGGTGAAAAGATCAATTAAGGTGCCTGCTATTAGTAACAAGCTAGCAGATATCCCTCCTGATGATTATTCATGGAGGAAGTACGGCCAGAAGCCAATCAAGGGATCTCCTCACCCTAGGGGATACTATAAATGTAGTAGCATGAGAGGTTGTCCGGCCAGGAAGCATGTGGAGAGATGCTTGGAAGAACCTTCCATGCTTATCGTCACCTATGAAGGCGAACATAACCACCCAAGGATACCATCACAATCCACAACGACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

369

Amino Acids

41.19

Weight (kDa)

9.69

Isoelectric Point (pI)

55.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_zn_clust	PF10533	253 - 298	5.2e-18	Plant zinc cluster domain
WRKY	PF03106	302 - 359	3.7e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30590
fragaria_vesca	FvH4_2g22300 FvH4_2g22300 FvH4_2g22300 FvH4_2g22300
malus_domestica	MD05G1204400.v1.1 MD10G1191400.v1.1
prunus_persica	Prupe.8G230700_v2.0.a1
pyrus_communis	pycom05g19070 pycom10g16500
rosa_chinensis	RchiOBHm_Chr6g0289301
rosa_laevigata	RLG00000012315
rosa_multiflora	Rmu_sc0001527.1_g000020
rosa_roxburghii	Rroxscaffold_7G00179360
rosa_rugosa	Rorug06G0202500 Rorug06G0202600
rosa_samantha	Rh6AG313400 Rh6BG320900 Rh6CG327100 Rh6DG312800
rosa_wichuraiana	Rw6G027090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	865
AccII	CGCG	1 cut(s)	773
AciI	CCGC	3 cut(s)	164, 563, 771
AclWI	GGATC	2 cut(s)	747, 955
AcoI	YGGCCR	2 cut(s)	928, 999
AcsI	RAATTY	4 cut(s)	154, 261, 391, 745
AcuI	CTGAAG	2 cut(s)	473, 521
AfaI	GTAC	3 cut(s)	304, 575, 926
AfiI	CCNNNNNNNGG	4 cut(s)	41, 418, 777, 944
AflII	CTTAAG	2 cut(s)	397, 664
AgsI	TTSAA	6 cut(s)	71, 115, 193, 260, 341, 452
AjnI	CCWGG	1 cut(s)	1001
AluBI	AGCT	5 cut(s)	77, 99, 615, 621, 886
AluI	AGCT	5 cut(s)	77, 99, 615, 621, 886
Alw21I	GWGCWC	1 cut(s)	431
Alw26I	GTCTC	1 cut(s)	129
AlwI	GGATC	2 cut(s)	747, 955
AoxI	GGCC	2 cut(s)	928, 999
ApeKI	GCWGC	9 cut(s)	86, 99, 493, 502, 517, 520, 541, 544, 621
ApoI	RAATTY	4 cut(s)	154, 261, 391, 745
AspA2I	CCTAGG	1 cut(s)	959
AspLEI	GCGC	1 cut(s)	475
AspS9I	GGNCC	1 cut(s)	648
AsuHPI	GGTGA	3 cut(s)	859, 947, 1042
AsuNHI	GCTAGC	1 cut(s)	886
AvaII	GGWCC	1 cut(s)	648
AvrII	CCTAGG	1 cut(s)	959
BanI	GGYRCC	1 cut(s)	865
BanII	GRGCYC	1 cut(s)	724
Bbv12I	GWGCWC	1 cut(s)	431
BbvI	GCAGC	9 cut(s)	73, 86, 505, 514, 529, 532, 553, 556, 608
BccI	CCATC	3 cut(s)	321, 668, 1093
BceAI	ACGGC	2 cut(s)	802, 943
BciT130I	CCWGG	1 cut(s)	1003
BciVI	GTATCC	2 cut(s)	959, 1074
BcoDI	GTCTC	1 cut(s)	129
BfaI	CTAG	5 cut(s)	234, 345, 618, 887, 960
BfrI	CTTAAG	2 cut(s)	397, 664
BfuI	GTATCC	2 cut(s)	959, 1074
BisI	GCNGC	9 cut(s)	87, 100, 494, 503, 518, 521, 542, 545, 622
BlnI	CCTAGG	1 cut(s)	959
BlsI	GCNGC	9 cut(s)	88, 101, 495, 504, 519, 522, 543, 546, 623
Bme1390I	CCNGG	1 cut(s)	1003
Bme18I	GGWCC	1 cut(s)	648
BmgT120I	GGNCC	1 cut(s)	648
BmiI	GGNNCC	2 cut(s)	721, 867
BmrFI	CCNGG	1 cut(s)	1003
BmrI	ACTGGG	1 cut(s)	180
BmsI	GCATC	2 cut(s)	514, 1010
BmtI	GCTAGC	1 cut(s)	890
BmuI	ACTGGG	1 cut(s)	180
BplI	GAGNNNNNCTC	2 cut(s)	686, 718
BpuEI	CTTGAG	2 cut(s)	233, 351
BsaJI	CCNNGG	2 cut(s)	959, 1076
BsaWI	WCCGGW	1 cut(s)	576
BsaXI	ACNNNNNCTCC	4 cut(s)	167, 197, 574, 604
Bsc4I	CCNNNNNNNGG	4 cut(s)	41, 418, 777, 944
Bse1I	ACTGG	2 cut(s)	175, 223
BseBI	CCWGG	1 cut(s)	1003
BseDI	CCNNGG	2 cut(s)	959, 1076
BseGI	GGATG	2 cut(s)	638, 787
BseLI	CCNNNNNNNGG	4 cut(s)	41, 418, 777, 944
BseMII	CTCAG	2 cut(s)	140, 345
BseNI	ACTGG	2 cut(s)	175, 223
BseRI	GAGGAG	2 cut(s)	595, 942
BseXI	GCAGC	9 cut(s)	73, 86, 505, 514, 529, 532, 553, 556, 608
BsgI	GTGCAG	1 cut(s)	607
Bsh1236I	CGCG	1 cut(s)	773
BshFI	GGCC	2 cut(s)	930, 1001
BshNI	GGYRCC	1 cut(s)	865
BsiHKAI	GWGCWC	1 cut(s)	431
BsiSI	CCGG	2 cut(s)	577, 998
BslI	CCNNNNNNNGG	4 cut(s)	41, 418, 777, 944
BsmAI	GTCTC	1 cut(s)	129
BsnI	GGCC	2 cut(s)	930, 1001
Bsp1286I	GDGCHC	2 cut(s)	431, 724
Bsp1407I	TGTACA	1 cut(s)	302
Bsp143I	GATC	4 cut(s)	136, 739, 854, 947
BspACI	CCGC	3 cut(s)	164, 563, 771
BspANI	GGCC	2 cut(s)	930, 1001
BspCNI	CTCAG	2 cut(s)	139, 346
BspFNI	CGCG	1 cut(s)	773
BspLI	GGNNCC	2 cut(s)	721, 867
BspOI	GCTAGC	1 cut(s)	890
BspPI	GGATC	2 cut(s)	747, 955
BspT107I	GGYRCC	1 cut(s)	865
BspTI	CTTAAG	2 cut(s)	397, 664
BsrGI	TGTACA	1 cut(s)	302
BsrI	ACTGG	2 cut(s)	175, 223
BssECI	CCNNGG	2 cut(s)	959, 1076
BssMI	GATC	4 cut(s)	136, 739, 854, 947
BssT1I	CCWWGG	2 cut(s)	959, 1076
Bst2UI	CCWGG	1 cut(s)	1003
Bst6I	CTCTTC	4 cut(s)	14, 213, 736, 827
BstAFI	CTTAAG	2 cut(s)	397, 664
BstAUI	TGTACA	1 cut(s)	302
BstC8I	GCNNGC	3 cut(s)	97, 870, 888
BstDEI	CTNAG	3 cut(s)	126, 286, 354
BstF5I	GGATG	2 cut(s)	638, 787
BstFNI	CGCG	1 cut(s)	773
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	4 cut(s)	139, 742, 857, 950
BstMAI	GTCTC	1 cut(s)	129
BstMBI	GATC	4 cut(s)	136, 739, 854, 947
BstMWI	GCNNNNNNNGC	9 cut(s)	83, 92, 470, 499, 502, 526, 541, 591, 621
BstNI	CCWGG	1 cut(s)	1003
BstNSI	RCATGY	1 cut(s)	1013
BstSCI	CCNGG	1 cut(s)	1001
BstUI	CGCG	1 cut(s)	773
BstV1I	GCAGC	9 cut(s)	73, 86, 505, 514, 529, 532, 553, 556, 608
BstX2I	RGATCY	1 cut(s)	947
BstXI	CCANNNNNNTGG	1 cut(s)	716
BstYI	RGATCY	1 cut(s)	947
BsuI	GTATCC	2 cut(s)	959, 1074
BsuRI	GGCC	2 cut(s)	930, 1001
BtsCI	GGATG	2 cut(s)	638, 787
BtsI	GCAGTG	3 cut(s)	796, 814, 820
BtsIMutI	CAGTG	3 cut(s)	796, 814, 820
Cac8I	GCNNGC	3 cut(s)	97, 870, 888
CfoI	GCGC	1 cut(s)	475
Cfr13I	GGNCC	1 cut(s)	648
Csp6I	GTAC	3 cut(s)	303, 574, 925
CviAII	CATG	5 cut(s)	230, 915, 985, 1010, 1039
CviQI	GTAC	3 cut(s)	303, 574, 925
DdeI	CTNAG	3 cut(s)	126, 286, 354
DpnI	GATC	4 cut(s)	138, 741, 856, 949
DpnII	GATC	4 cut(s)	136, 739, 854, 947
DraI	TTTAAA	2 cut(s)	159, 381
EaeI	YGGCCR	2 cut(s)	928, 999
Eam1104I	CTCTTC	4 cut(s)	14, 213, 736, 827
EarI	CTCTTC	4 cut(s)	14, 213, 736, 827
EciI	GGCGGA	1 cut(s)	179
Eco130I	CCWWGG	2 cut(s)	959, 1076
Eco24I	GRGCYC	1 cut(s)	724
Eco32I	GATATC	1 cut(s)	895
Eco47I	GGWCC	1 cut(s)	648
Eco57I	CTGAAG	2 cut(s)	473, 521
EcoO109I	RGGNCCY	1 cut(s)	648
EcoRII	CCWGG	1 cut(s)	1001
EcoRV	GATATC	1 cut(s)	895
EcoT14I	CCWWGG	2 cut(s)	959, 1076
EcoT38I	GRGCYC	1 cut(s)	724
ErhI	CCWWGG	2 cut(s)	959, 1076
FaeI	CATG	5 cut(s)	233, 918, 988, 1013, 1042
FatI	CATG	5 cut(s)	229, 914, 984, 1009, 1038
FauNDI	CATATG	1 cut(s)	549
Fnu4HI	GCNGC	9 cut(s)	87, 100, 494, 503, 518, 521, 542, 545, 622
FokI	GGATG	2 cut(s)	625, 794
FriOI	GRGCYC	1 cut(s)	724
Fsp4HI	GCNGC	9 cut(s)	87, 100, 494, 503, 518, 521, 542, 545, 622
FspBI	CTAG	5 cut(s)	234, 345, 618, 887, 960
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	9 cut(s)	87, 100, 494, 503, 518, 521, 542, 545, 622
HaeIII	GGCC	2 cut(s)	930, 1001
HapII	CCGG	2 cut(s)	577, 998
HhaI	GCGC	1 cut(s)	475
Hin1II	CATG	5 cut(s)	233, 918, 988, 1013, 1042
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HinfI	GANTC	1 cut(s)	115
HpaII	CCGG	2 cut(s)	577, 998
HphI	GGTGA	3 cut(s)	859, 947, 1042
Hpy188I	TCNGA	1 cut(s)	739
Hpy188III	TCNNGA	6 cut(s)	193, 250, 272, 345, 368, 902
Hpy99I	CGWCG	1 cut(s)	1105
HpyAV	CCTTC	5 cut(s)	497, 661, 715, 1044, 1052
HpyCH4IV	ACGT	1 cut(s)	1103
HpyCH4V	TGCA	3 cut(s)	95, 624, 794
HpyF10VI	GCNNNNNNNGC	9 cut(s)	83, 92, 470, 499, 502, 526, 541, 591, 621
HpyF3I	CTNAG	3 cut(s)	126, 286, 354
HpySE526I	ACGT	1 cut(s)	1103
Hsp92II	CATG	5 cut(s)	233, 918, 988, 1013, 1042
HspAI	GCGC	1 cut(s)	473
Kzo9I	GATC	4 cut(s)	136, 739, 854, 947
LmnI	GCTCC	2 cut(s)	582, 719
Lsp1109I	GCAGC	9 cut(s)	73, 86, 505, 514, 529, 532, 553, 556, 608
LweI	GCATC	2 cut(s)	514, 1010
MaeI	CTAG	5 cut(s)	234, 345, 618, 887, 960
MaeII	ACGT	1 cut(s)	1103
MaeIII	GTNAC	4 cut(s)	698, 818, 878, 1048
MalI	GATC	4 cut(s)	138, 741, 856, 949
MboI	GATC	4 cut(s)	136, 739, 854, 947
MboII	GAAGA	9 cut(s)	83, 195, 200, 329, 651, 723, 726, 844, 1040
MflI	RGATCY	1 cut(s)	947
MhlI	GDGCHC	2 cut(s)	431, 724
MluCI	AATT	8 cut(s)	154, 261, 298, 391, 422, 447, 745, 858
MmeI	TCCRAC	1 cut(s)	59
MseI	TTAA	5 cut(s)	158, 380, 398, 665, 861
MspCI	CTTAAG	2 cut(s)	397, 664
MspI	CCGG	2 cut(s)	577, 998
MspR9I	CCNGG	1 cut(s)	1003
MvaI	CCWGG	1 cut(s)	1003
MvnI	CGCG	1 cut(s)	773
MwoI	GCNNNNNNNGC	9 cut(s)	83, 92, 470, 499, 502, 526, 541, 591, 621
NdeI	CATATG	1 cut(s)	549
NdeII	GATC	4 cut(s)	136, 739, 854, 947
NheI	GCTAGC	1 cut(s)	886
NlaIII	CATG	5 cut(s)	233, 918, 988, 1013, 1042
NlaIV	GGNNCC	2 cut(s)	721, 867
NmuCI	GTSAC	2 cut(s)	818, 1048
NspI	RCATGY	1 cut(s)	1013
PfeI	GAWTC	1 cut(s)	115
PkrI	GCNGC	9 cut(s)	88, 101, 495, 504, 519, 522, 543, 546, 623
PpuMI	RGGWCCY	1 cut(s)	648
Psp5II	RGGWCCY	1 cut(s)	648
Psp6I	CCWGG	1 cut(s)	1001
PspGI	CCWGG	1 cut(s)	1001
PspN4I	GGNNCC	2 cut(s)	721, 867
PspPI	GGNCC	1 cut(s)	648
PspPPI	RGGWCCY	1 cut(s)	648
PsuI	RGATCY	1 cut(s)	947
RsaI	GTAC	3 cut(s)	304, 575, 926
RsaNI	GTAC	3 cut(s)	303, 574, 925
SaqAI	TTAA	5 cut(s)	158, 380, 398, 665, 861
SatI	GCNGC	9 cut(s)	87, 100, 494, 503, 518, 521, 542, 545, 622
Sau3AI	GATC	4 cut(s)	136, 739, 854, 947
Sau96I	GGNCC	1 cut(s)	648
ScrFI	CCNGG	1 cut(s)	1003
SduI	GDGCHC	2 cut(s)	431, 724
SfaNI	GCATC	2 cut(s)	514, 1010
SinI	GGWCC	1 cut(s)	648
SmlI	CTYRAG	4 cut(s)	248, 366, 397, 664
SmoI	CTYRAG	4 cut(s)	248, 366, 397, 664
Sse9I	AATT	8 cut(s)	154, 261, 298, 391, 422, 447, 745, 858
SsiI	CCGC	3 cut(s)	164, 563, 771
SspMI	CTAG	5 cut(s)	234, 345, 618, 887, 960
StyD4I	CCNGG	1 cut(s)	1001
StyI	CCWWGG	2 cut(s)	959, 1076
TaiI	ACGT	1 cut(s)	1106
TasI	AATT	8 cut(s)	154, 261, 298, 391, 422, 447, 745, 858
TatI	WGTACW	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	5 cut(s)	158, 380, 398, 665, 861
Tru9I	TTAA	5 cut(s)	158, 380, 398, 665, 861
TscAI	CASTG	3 cut(s)	796, 814, 827
TseFI	GTSAC	2 cut(s)	818, 1048
TseI	GCWGC	9 cut(s)	86, 99, 493, 502, 517, 520, 541, 544, 621
Tsp45I	GTSAC	2 cut(s)	818, 1048
TspDTI	ATGAA	4 cut(s)	566, 643, 903, 1071
TspRI	CASTG	3 cut(s)	796, 814, 827
Vha464I	CTTAAG	2 cut(s)	397, 664
VpaK11BI	GGWCC	1 cut(s)	648
XapI	RAATTY	4 cut(s)	154, 261, 391, 745
XbaI	TCTAGA	1 cut(s)	344
XceI	RCATGY	1 cut(s)	1013
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1009
XmaJI	CCTAGG	1 cut(s)	959
XspI	CTAG	5 cut(s)	234, 345, 618, 887, 960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.