Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0010452

Physical Location & Seq

Genomic Coordinates Reverse (-)

51260045 .. 51262078

Gene Structure 2034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG313400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGAGGAAGTTGAAGAAGCTAACAAAGCTGCTGTTGCAAGCTGCCATAGAGTTTTGAATCTGTTGTCTCAGCCACAAGATCAAGTTCAGTTTAGGAATTTAAAGGCGGAAACTGGGGAGGCTGTGTTTAGGTTCAAGAAAGTTGCTTCTCTTCTCAATACTGGTTTGGGTCATGCTAGAGTTAGAAAGCTCAAGAAACTTCAAATCCCTTTTCCTGAAAGTGTCCTCTTAGATAATCCTAATTGTACAACAGACCATCACTCTAAAAATCCTAATTTTCTTCAATCTAGATTTGCTGAGAACCCAACTCAAGATTTGAGTTTAAATGTTAGAAATTCCTTAAGTTTGGGAAACCCCTCTTTGGAATTGAGCACTAATGGGAAAACCCCAATTCAACTACAACAAGCACTTCCAGCGCACTATCACTTCCTTCAGCAGCAACAGCAGCATCAACAACAACAGCAGCAGCAGAGGCTATTGCTTCAGCAGCAGCATATGAAACAACAAGCGGAAATGATGTACCGGAGGAGCAATAGTGGCATAAACCTCAACTTTGATAGCTCTAGCTGCACACCCACAATGTCATCTACAAGGTCCTTCATTTCTTCCTTGAGCATAGATGGAAGCGTGGCTAACTTGGAGGGTAACTCCTTCCATTTGATTGGAGCTCCTATCTCTTCTTCGGATCAAAATTCACAACATAAGAGGAAGTGTTCCGCGAGGGGGGATGACGGCAGTGCAAAATGTGGTAGCAGTGGTAGGTGTCACTGCTCAAAGAAGAGGAAACATAGGGTGAAAAGATCAATTAAGGTGCCTGCTATTAGTAACAAACTAGCAGATATCCCTCCTGATGATTATTCATGGAGGAAGTACGGCCAGAAGCCAATCAAGGGATCTCCTCACCCTAGGGGATACTATAAATGTAGTAGCATGAGAGGTTGTCCAGCCAGGAAGCATGTGGAGAGATGCTTGGAAGAACCTTCCATGCTTATCGTCACCTATGAAGGCGAACATAACCACCCAAGGATACCATCACAATCCACAACGACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

350

Amino Acids

39.3

Weight (kDa)

9.66

Isoelectric Point (pI)

56.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_zn_clust	PF10533	235 - 280	4.9e-18	Plant zinc cluster domain
WRKY	PF03106	284 - 341	3.4e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30590
fragaria_vesca	FvH4_2g22300 FvH4_2g22300 FvH4_2g22300 FvH4_2g22300
malus_domestica	MD05G1204400.v1.1 MD10G1191400.v1.1
prunus_persica	Prupe.8G230700_v2.0.a1
pyrus_communis	pycom05g19070 pycom10g16500
rosa_chinensis	RchiOBHm_Chr6g0289301
rosa_laevigata	RLG00000012315
rosa_multiflora	Rmu_sc0001527.1_g000020
rosa_roxburghii	Rroxscaffold_7G00179360
rosa_rugosa	Rorug06G0202500 Rorug06G0202600
rosa_samantha	Rh6AG313400 Rh6BG320900 Rh6CG327100 Rh6DG312800
rosa_wichuraiana	Rw6G027090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	811
AccII	CGCG	1 cut(s)	719
AciI	CCGC	3 cut(s)	107, 509, 717
AclWI	GGATC	2 cut(s)	693, 901
AcoI	YGGCCR	1 cut(s)	874
AcsI	RAATTY	3 cut(s)	97, 334, 691
AcuI	CTGAAG	2 cut(s)	416, 467
AfaI	GTAC	3 cut(s)	247, 521, 872
AfiI	CCNNNNNNNGG	3 cut(s)	361, 723, 890
AflII	CTTAAG	1 cut(s)	340
AgsI	TTSAA	6 cut(s)	14, 58, 136, 203, 284, 395
AjnI	CCWGG	1 cut(s)	947
AluBI	AGCT	7 cut(s)	20, 29, 42, 190, 561, 567, 668
AluI	AGCT	7 cut(s)	20, 29, 42, 190, 561, 567, 668
Alw21I	GWGCWC	2 cut(s)	374, 670
Alw26I	GTCTC	1 cut(s)	72
AlwI	GGATC	2 cut(s)	693, 901
AoxI	GGCC	1 cut(s)	874
ApeKI	GCWGC	9 cut(s)	29, 42, 436, 445, 463, 466, 487, 490, 567
ApoI	RAATTY	3 cut(s)	97, 334, 691
AspA2I	CCTAGG	1 cut(s)	905
AspLEI	GCGC	1 cut(s)	418
AspS9I	GGNCC	1 cut(s)	594
AsuHPI	GGTGA	3 cut(s)	805, 893, 988
AvaII	GGWCC	1 cut(s)	594
AvrII	CCTAGG	1 cut(s)	905
BanI	GGYRCC	1 cut(s)	811
BanII	GRGCYC	1 cut(s)	670
Bbv12I	GWGCWC	2 cut(s)	374, 670
BbvI	GCAGC	9 cut(s)	16, 29, 448, 457, 475, 478, 499, 502, 554
BccI	CCATC	3 cut(s)	264, 614, 1039
BceAI	ACGGC	2 cut(s)	748, 889
BciT130I	CCWGG	1 cut(s)	949
BciVI	GTATCC	2 cut(s)	905, 1020
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	5 cut(s)	177, 288, 564, 833, 906
BfrI	CTTAAG	1 cut(s)	340
BfuI	GTATCC	2 cut(s)	905, 1020
BisI	GCNGC	9 cut(s)	30, 43, 437, 446, 464, 467, 488, 491, 568
BlnI	CCTAGG	1 cut(s)	905
BlsI	GCNGC	9 cut(s)	31, 44, 438, 447, 465, 468, 489, 492, 569
Bme1390I	CCNGG	1 cut(s)	949
Bme18I	GGWCC	1 cut(s)	594
BmgT120I	GGNCC	1 cut(s)	594
BmiI	GGNNCC	1 cut(s)	813
BmrFI	CCNGG	1 cut(s)	949
BmrI	ACTGGG	1 cut(s)	123
BmsI	GCATC	2 cut(s)	457, 956
BmuI	ACTGGG	1 cut(s)	123
BplI	GAGNNNNNCTC	2 cut(s)	632, 664
BpuEI	CTTGAG	3 cut(s)	176, 294, 631
BsaJI	CCNNGG	2 cut(s)	905, 1022
BsaWI	WCCGGW	1 cut(s)	522
BsaXI	ACNNNNNCTCC	4 cut(s)	110, 140, 520, 550
Bsc4I	CCNNNNNNNGG	3 cut(s)	361, 723, 890
Bse1I	ACTGG	2 cut(s)	118, 166
BseBI	CCWGG	1 cut(s)	949
BseDI	CCNNGG	2 cut(s)	905, 1022
BseGI	GGATG	1 cut(s)	733
BseLI	CCNNNNNNNGG	3 cut(s)	361, 723, 890
BseMII	CTCAG	2 cut(s)	83, 288
BseNI	ACTGG	2 cut(s)	118, 166
BseRI	GAGGAG	2 cut(s)	541, 888
BseXI	GCAGC	9 cut(s)	16, 29, 448, 457, 475, 478, 499, 502, 554
BsgI	GTGCAG	1 cut(s)	553
Bsh1236I	CGCG	1 cut(s)	719
BshFI	GGCC	1 cut(s)	876
BshNI	GGYRCC	1 cut(s)	811
BsiHKAI	GWGCWC	2 cut(s)	374, 670
BsiSI	CCGG	1 cut(s)	523
BslI	CCNNNNNNNGG	3 cut(s)	361, 723, 890
BsmAI	GTCTC	1 cut(s)	72
BsnI	GGCC	1 cut(s)	876
Bsp1286I	GDGCHC	2 cut(s)	374, 670
Bsp1407I	TGTACA	1 cut(s)	245
Bsp143I	GATC	4 cut(s)	79, 685, 800, 893
BspACI	CCGC	3 cut(s)	107, 509, 717
BspANI	GGCC	1 cut(s)	876
BspCNI	CTCAG	2 cut(s)	82, 289
BspFNI	CGCG	1 cut(s)	719
BspLI	GGNNCC	1 cut(s)	813
BspPI	GGATC	2 cut(s)	693, 901
BspT107I	GGYRCC	1 cut(s)	811
BspTI	CTTAAG	1 cut(s)	340
BsrGI	TGTACA	1 cut(s)	245
BsrI	ACTGG	2 cut(s)	118, 166
BssECI	CCNNGG	2 cut(s)	905, 1022
BssMI	GATC	4 cut(s)	79, 685, 800, 893
BssT1I	CCWWGG	2 cut(s)	905, 1022
Bst2UI	CCWGG	1 cut(s)	949
Bst6I	CTCTTC	3 cut(s)	156, 682, 773
BstAFI	CTTAAG	1 cut(s)	340
BstAUI	TGTACA	1 cut(s)	245
BstC8I	GCNNGC	2 cut(s)	40, 816
BstDEI	CTNAG	3 cut(s)	69, 229, 297
BstF5I	GGATG	1 cut(s)	733
BstFNI	CGCG	1 cut(s)	719
BstHHI	GCGC	1 cut(s)	418
BstKTI	GATC	4 cut(s)	82, 688, 803, 896
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	4 cut(s)	79, 685, 800, 893
BstMWI	GCNNNNNNNGC	9 cut(s)	26, 35, 413, 442, 445, 472, 487, 537, 567
BstNI	CCWGG	1 cut(s)	949
BstNSI	RCATGY	1 cut(s)	959
BstSCI	CCNGG	1 cut(s)	947
BstUI	CGCG	1 cut(s)	719
BstV1I	GCAGC	9 cut(s)	16, 29, 448, 457, 475, 478, 499, 502, 554
BstX2I	RGATCY	1 cut(s)	893
BstXI	CCANNNNNNTGG	1 cut(s)	662
BstYI	RGATCY	1 cut(s)	893
BsuI	GTATCC	2 cut(s)	905, 1020
BsuRI	GGCC	1 cut(s)	876
BtsCI	GGATG	1 cut(s)	733
BtsI	GCAGTG	3 cut(s)	742, 760, 766
BtsIMutI	CAGTG	3 cut(s)	742, 760, 766
Cac8I	GCNNGC	2 cut(s)	40, 816
CfoI	GCGC	1 cut(s)	418
Cfr13I	GGNCC	1 cut(s)	594
Csp6I	GTAC	3 cut(s)	246, 520, 871
CviAII	CATG	5 cut(s)	173, 861, 931, 956, 985
CviQI	GTAC	3 cut(s)	246, 520, 871
DdeI	CTNAG	3 cut(s)	69, 229, 297
DpnI	GATC	4 cut(s)	81, 687, 802, 895
DpnII	GATC	4 cut(s)	79, 685, 800, 893
DraI	TTTAAA	2 cut(s)	102, 324
EaeI	YGGCCR	1 cut(s)	874
Eam1104I	CTCTTC	3 cut(s)	156, 682, 773
EarI	CTCTTC	3 cut(s)	156, 682, 773
EciI	GGCGGA	1 cut(s)	122
Ecl136II	GAGCTC	1 cut(s)	668
Eco130I	CCWWGG	2 cut(s)	905, 1022
Eco24I	GRGCYC	1 cut(s)	670
Eco32I	GATATC	1 cut(s)	841
Eco47I	GGWCC	1 cut(s)	594
Eco53kI	GAGCTC	1 cut(s)	668
Eco57I	CTGAAG	2 cut(s)	416, 467
EcoICRI	GAGCTC	1 cut(s)	668
EcoO109I	RGGNCCY	1 cut(s)	594
EcoRII	CCWGG	1 cut(s)	947
EcoRV	GATATC	1 cut(s)	841
EcoT14I	CCWWGG	2 cut(s)	905, 1022
EcoT38I	GRGCYC	1 cut(s)	670
ErhI	CCWWGG	2 cut(s)	905, 1022
FaeI	CATG	5 cut(s)	176, 864, 934, 959, 988
FatI	CATG	5 cut(s)	172, 860, 930, 955, 984
FauNDI	CATATG	1 cut(s)	495
Fnu4HI	GCNGC	9 cut(s)	30, 43, 437, 446, 464, 467, 488, 491, 568
FokI	GGATG	1 cut(s)	740
FriOI	GRGCYC	1 cut(s)	670
Fsp4HI	GCNGC	9 cut(s)	30, 43, 437, 446, 464, 467, 488, 491, 568
FspBI	CTAG	5 cut(s)	177, 288, 564, 833, 906
GlaI	GCGC	1 cut(s)	417
GluI	GCNGC	9 cut(s)	30, 43, 437, 446, 464, 467, 488, 491, 568
HaeIII	GGCC	1 cut(s)	876
HapII	CCGG	1 cut(s)	523
HhaI	GCGC	1 cut(s)	418
Hin1II	CATG	5 cut(s)	176, 864, 934, 959, 988
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HinfI	GANTC	1 cut(s)	58
HpaII	CCGG	1 cut(s)	523
HphI	GGTGA	3 cut(s)	805, 893, 988
Hpy188I	TCNGA	1 cut(s)	685
Hpy188III	TCNNGA	6 cut(s)	136, 193, 215, 288, 311, 848
Hpy99I	CGWCG	1 cut(s)	1051
HpyAV	CCTTC	5 cut(s)	440, 607, 661, 990, 998
HpyCH4IV	ACGT	1 cut(s)	1049
HpyCH4V	TGCA	3 cut(s)	38, 570, 740
HpyF10VI	GCNNNNNNNGC	9 cut(s)	26, 35, 413, 442, 445, 472, 487, 537, 567
HpyF3I	CTNAG	3 cut(s)	69, 229, 297
HpySE526I	ACGT	1 cut(s)	1049
Hsp92II	CATG	5 cut(s)	176, 864, 934, 959, 988
HspAI	GCGC	1 cut(s)	416
Kzo9I	GATC	4 cut(s)	79, 685, 800, 893
LmnI	GCTCC	3 cut(s)	528, 665, 673
Lsp1109I	GCAGC	9 cut(s)	16, 29, 448, 457, 475, 478, 499, 502, 554
LweI	GCATC	2 cut(s)	457, 956
MaeI	CTAG	5 cut(s)	177, 288, 564, 833, 906
MaeII	ACGT	1 cut(s)	1049
MaeIII	GTNAC	4 cut(s)	644, 764, 824, 994
MalI	GATC	4 cut(s)	81, 687, 802, 895
MboI	GATC	4 cut(s)	79, 685, 800, 893
MboII	GAAGA	8 cut(s)	26, 143, 272, 597, 669, 672, 790, 986
MflI	RGATCY	1 cut(s)	893
MhlI	GDGCHC	2 cut(s)	374, 670
MluCI	AATT	8 cut(s)	97, 241, 274, 334, 365, 390, 691, 804
MseI	TTAA	4 cut(s)	101, 323, 341, 807
MspCI	CTTAAG	1 cut(s)	340
MspI	CCGG	1 cut(s)	523
MspR9I	CCNGG	1 cut(s)	949
MvaI	CCWGG	1 cut(s)	949
MvnI	CGCG	1 cut(s)	719
MwoI	GCNNNNNNNGC	9 cut(s)	26, 35, 413, 442, 445, 472, 487, 537, 567
NdeI	CATATG	1 cut(s)	495
NdeII	GATC	4 cut(s)	79, 685, 800, 893
NlaIII	CATG	5 cut(s)	176, 864, 934, 959, 988
NlaIV	GGNNCC	1 cut(s)	813
NmuCI	GTSAC	2 cut(s)	764, 994
NspI	RCATGY	1 cut(s)	959
PfeI	GAWTC	1 cut(s)	58
PkrI	GCNGC	9 cut(s)	31, 44, 438, 447, 465, 468, 489, 492, 569
PpuMI	RGGWCCY	1 cut(s)	594
Psp124BI	GAGCTC	1 cut(s)	670
Psp5II	RGGWCCY	1 cut(s)	594
Psp6I	CCWGG	1 cut(s)	947
PspGI	CCWGG	1 cut(s)	947
PspN4I	GGNNCC	1 cut(s)	813
PspPI	GGNCC	1 cut(s)	594
PspPPI	RGGWCCY	1 cut(s)	594
PsuI	RGATCY	1 cut(s)	893
RsaI	GTAC	3 cut(s)	247, 521, 872
RsaNI	GTAC	3 cut(s)	246, 520, 871
SacI	GAGCTC	1 cut(s)	670
SaqAI	TTAA	4 cut(s)	101, 323, 341, 807
SatI	GCNGC	9 cut(s)	30, 43, 437, 446, 464, 467, 488, 491, 568
Sau3AI	GATC	4 cut(s)	79, 685, 800, 893
Sau96I	GGNCC	1 cut(s)	594
ScrFI	CCNGG	1 cut(s)	949
SduI	GDGCHC	2 cut(s)	374, 670
SfaNI	GCATC	2 cut(s)	457, 956
SinI	GGWCC	1 cut(s)	594
SmlI	CTYRAG	4 cut(s)	191, 309, 340, 610
SmoI	CTYRAG	4 cut(s)	191, 309, 340, 610
Sse9I	AATT	8 cut(s)	97, 241, 274, 334, 365, 390, 691, 804
SsiI	CCGC	3 cut(s)	107, 509, 717
SspMI	CTAG	5 cut(s)	177, 288, 564, 833, 906
SstI	GAGCTC	1 cut(s)	670
StyD4I	CCNGG	1 cut(s)	947
StyI	CCWWGG	2 cut(s)	905, 1022
TaiI	ACGT	1 cut(s)	1052
TasI	AATT	8 cut(s)	97, 241, 274, 334, 365, 390, 691, 804
TatI	WGTACW	1 cut(s)	245
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	4 cut(s)	101, 323, 341, 807
Tru9I	TTAA	4 cut(s)	101, 323, 341, 807
TscAI	CASTG	3 cut(s)	742, 760, 773
TseFI	GTSAC	2 cut(s)	764, 994
TseI	GCWGC	9 cut(s)	29, 42, 436, 445, 463, 466, 487, 490, 567
Tsp45I	GTSAC	2 cut(s)	764, 994
TspDTI	ATGAA	4 cut(s)	512, 589, 849, 1017
TspRI	CASTG	3 cut(s)	742, 760, 773
Vha464I	CTTAAG	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	594
XapI	RAATTY	3 cut(s)	97, 334, 691
XbaI	TCTAGA	1 cut(s)	287
XceI	RCATGY	1 cut(s)	959
XcmI	CCANNNNNNNNNTGG	1 cut(s)	955
XmaJI	CCTAGG	1 cut(s)	905
XspI	CTAG	5 cut(s)	177, 288, 564, 833, 906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.