Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010452

Physical Location & Seq

Genomic Coordinates Reverse (-)

52393195 .. 52396805

Gene Structure 3611 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25953

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGAGGAAGTTGAAGAAGCTAACAAAGCTGCTGTTGCAAGCTGCCATAGAGTTTTGAATCTGTTGTCTCAGCCACAAGATCAAGTTCAGTTTAGGAATTTAAAGGCGGAAACTGGGGAGGCTGTGTTTAGGTTCAAGAAAGTTGCTTCTCTTCTCAATACTGGTTTGGGTCATGCTAGAGTTAGAAAGCTCAAGAAACTTCAAATCCCTTTTCCTGAAAGTGTCCTCTTAGATAATCCTAATTGTACAACAGACCATCACTCTAAAAATCCTCATTTTCTTCAATCTAGATTTGCTGAGAACCCAACTCAAGATTTGAGTTTAAATGTTAGAAATTCCCTAAGTTTGGGAAACCCCTCTTTGGAATTGAGTACTAATGGGAAAACCCCAATTCAACTACAACAAGCACTTCCAGCGCACTATCACTTCCTTCAGCAGCAACAGCAGCATCAACAACAGCAGCAGCAGCAGAGGCTATTGCTTCAGCAGCAGCATATGAAACAACAAGCGGAAATGATGTACCGGAGGAGCAATAGTGGCATAAACCTCAACTTTGATAGCTCTAGCTGCACACCCACAATGTCATCTACAAGGTCCTTCATTTCTTCCTTGAGCATAGATGGAAGCGTGGCTAACTTGGAGGGTAACTCATTCCATTTGATTGGAGCTCCTATCTCTTCTTCGGATCAAAATTCACAACATAAGAGGAAGTGTTCCGCGAGGGGGGATGACGGCAGTGCAAAATGCGGTAGCAGTGGTAGGTGTCACTGCTCAAAGAAGAGGAAACATAGGGTGAAAAGATCAATTAAGGTGCCTGCTATTAGTAACAAACTAGCAGATATCCCTCCTGATGATTATTCATGGAGGAAGTACGGCCAGAAGCCAATCAAGGGATCTCCTCACCCTAGGGGATACTATAAATGTAGTAGCATGAGAGGTTGTCCAGCGAGGAAGCATGTGGAGAGATGCTTGGAAGAACCTTCCATGCTTATCGTCACCTATGAAGGTGAACATAACCACCCGAGGATACCATCACAATCCACAACGACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

350

Amino Acids

39.32

Weight (kDa)

9.66

Isoelectric Point (pI)

56.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_zn_clust	PF10533	235 - 280	4.9e-18	Plant zinc cluster domain
WRKY	PF03106	284 - 341	3.4e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30590
fragaria_vesca	FvH4_2g22300 FvH4_2g22300 FvH4_2g22300 FvH4_2g22300
malus_domestica	MD05G1204400.v1.1 MD10G1191400.v1.1
prunus_persica	Prupe.8G230700_v2.0.a1
pyrus_communis	pycom05g19070 pycom10g16500
rosa_chinensis	RchiOBHm_Chr6g0289301
rosa_laevigata	RLG00000012315
rosa_multiflora	Rmu_sc0001527.1_g000020
rosa_roxburghii	Rroxscaffold_7G00179360
rosa_rugosa	Rorug06G0202500 Rorug06G0202600
rosa_samantha	Rh6AG313400 Rh6BG320900 Rh6CG327100 Rh6DG312800
rosa_wichuraiana	Rw6G027090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	811
AccII	CGCG	1 cut(s)	719
AciI	CCGC	4 cut(s)	107, 509, 717, 747
AclWI	GGATC	2 cut(s)	693, 901
AcoI	YGGCCR	1 cut(s)	874
AcsI	RAATTY	3 cut(s)	97, 334, 691
AcuI	CTGAAG	2 cut(s)	416, 467
AfaI	GTAC	4 cut(s)	247, 373, 521, 872
AfiI	CCNNNNNNNGG	4 cut(s)	346, 361, 723, 890
AgsI	TTSAA	6 cut(s)	14, 58, 136, 203, 284, 395
AluBI	AGCT	7 cut(s)	20, 29, 42, 190, 561, 567, 668
AluI	AGCT	7 cut(s)	20, 29, 42, 190, 561, 567, 668
Alw21I	GWGCWC	1 cut(s)	670
Alw26I	GTCTC	1 cut(s)	72
AlwI	GGATC	2 cut(s)	693, 901
Ama87I	CYCGRG	1 cut(s)	1021
AoxI	GGCC	1 cut(s)	874
ApoI	RAATTY	3 cut(s)	97, 334, 691
AspA2I	CCTAGG	1 cut(s)	905
AspLEI	GCGC	1 cut(s)	418
AspS9I	GGNCC	1 cut(s)	594
AsuHPI	GGTGA	4 cut(s)	805, 893, 988, 1019
AvaI	CYCGRG	1 cut(s)	1021
AvaII	GGWCC	1 cut(s)	594
AvrII	CCTAGG	1 cut(s)	905
BanI	GGYRCC	1 cut(s)	811
BanII	GRGCYC	1 cut(s)	670
Bbv12I	GWGCWC	1 cut(s)	670
BccI	CCATC	3 cut(s)	264, 614, 1039
BceAI	ACGGC	2 cut(s)	748, 889
BciVI	GTATCC	2 cut(s)	905, 1020
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	5 cut(s)	177, 288, 564, 833, 906
BfuI	GTATCC	2 cut(s)	905, 1020
BlnI	CCTAGG	1 cut(s)	905
BmcAI	AGTACT	1 cut(s)	373
Bme18I	GGWCC	1 cut(s)	594
BmeT110I	CYCGRG	1 cut(s)	1021
BmgT120I	GGNCC	1 cut(s)	594
BmiI	GGNNCC	1 cut(s)	813
BmrI	ACTGGG	1 cut(s)	123
BmsI	GCATC	2 cut(s)	457, 956
BmuI	ACTGGG	1 cut(s)	123
BplI	GAGNNNNNCTC	2 cut(s)	632, 664
BpuEI	CTTGAG	3 cut(s)	176, 294, 631
BsaJI	CCNNGG	2 cut(s)	905, 1022
BsaWI	WCCGGW	1 cut(s)	522
BsaXI	ACNNNNNCTCC	4 cut(s)	110, 140, 520, 550
Bsc4I	CCNNNNNNNGG	4 cut(s)	346, 361, 723, 890
Bse1I	ACTGG	2 cut(s)	118, 166
BseDI	CCNNGG	2 cut(s)	905, 1022
BseGI	GGATG	1 cut(s)	733
BseLI	CCNNNNNNNGG	4 cut(s)	346, 361, 723, 890
BseMII	CTCAG	2 cut(s)	83, 288
BseNI	ACTGG	2 cut(s)	118, 166
BseRI	GAGGAG	2 cut(s)	541, 888
BsgI	GTGCAG	1 cut(s)	553
Bsh1236I	CGCG	1 cut(s)	719
BshFI	GGCC	1 cut(s)	876
BshNI	GGYRCC	1 cut(s)	811
BsiHKAI	GWGCWC	1 cut(s)	670
BsiHKCI	CYCGRG	1 cut(s)	1021
BsiSI	CCGG	1 cut(s)	523
BslI	CCNNNNNNNGG	4 cut(s)	346, 361, 723, 890
BsmAI	GTCTC	1 cut(s)	72
BsnI	GGCC	1 cut(s)	876
BsoBI	CYCGRG	1 cut(s)	1021
Bsp1286I	GDGCHC	1 cut(s)	670
Bsp1407I	TGTACA	1 cut(s)	245
Bsp143I	GATC	4 cut(s)	79, 685, 800, 893
BspACI	CCGC	4 cut(s)	107, 509, 717, 747
BspANI	GGCC	1 cut(s)	876
BspCNI	CTCAG	2 cut(s)	82, 289
BspFNI	CGCG	1 cut(s)	719
BspLI	GGNNCC	1 cut(s)	813
BspPI	GGATC	2 cut(s)	693, 901
BspT107I	GGYRCC	1 cut(s)	811
BsrGI	TGTACA	1 cut(s)	245
BsrI	ACTGG	2 cut(s)	118, 166
BssECI	CCNNGG	2 cut(s)	905, 1022
BssMI	GATC	4 cut(s)	79, 685, 800, 893
BssT1I	CCWWGG	1 cut(s)	905
Bst6I	CTCTTC	3 cut(s)	156, 682, 773
BstAUI	TGTACA	1 cut(s)	245
BstC8I	GCNNGC	2 cut(s)	40, 816
BstDEI	CTNAG	4 cut(s)	69, 229, 297, 341
BstF5I	GGATG	1 cut(s)	733
BstFNI	CGCG	1 cut(s)	719
BstHHI	GCGC	1 cut(s)	418
BstKTI	GATC	4 cut(s)	82, 688, 803, 896
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	4 cut(s)	79, 685, 800, 893
BstNSI	RCATGY	1 cut(s)	959
BstUI	CGCG	1 cut(s)	719
BstX2I	RGATCY	1 cut(s)	893
BstXI	CCANNNNNNTGG	1 cut(s)	662
BstYI	RGATCY	1 cut(s)	893
BsuI	GTATCC	2 cut(s)	905, 1020
BsuRI	GGCC	1 cut(s)	876
BtsCI	GGATG	1 cut(s)	733
BtsI	GCAGTG	3 cut(s)	742, 760, 766
BtsIMutI	CAGTG	3 cut(s)	742, 760, 766
Cac8I	GCNNGC	2 cut(s)	40, 816
CfoI	GCGC	1 cut(s)	418
Cfr13I	GGNCC	1 cut(s)	594
Csp6I	GTAC	4 cut(s)	246, 372, 520, 871
CviAII	CATG	5 cut(s)	173, 861, 931, 956, 985
CviQI	GTAC	4 cut(s)	246, 372, 520, 871
DdeI	CTNAG	4 cut(s)	69, 229, 297, 341
DpnI	GATC	4 cut(s)	81, 687, 802, 895
DpnII	GATC	4 cut(s)	79, 685, 800, 893
DraI	TTTAAA	2 cut(s)	102, 324
EaeI	YGGCCR	1 cut(s)	874
Eam1104I	CTCTTC	3 cut(s)	156, 682, 773
EarI	CTCTTC	3 cut(s)	156, 682, 773
EciI	GGCGGA	1 cut(s)	122
Ecl136II	GAGCTC	1 cut(s)	668
Eco130I	CCWWGG	1 cut(s)	905
Eco24I	GRGCYC	1 cut(s)	670
Eco32I	GATATC	1 cut(s)	841
Eco47I	GGWCC	1 cut(s)	594
Eco53kI	GAGCTC	1 cut(s)	668
Eco57I	CTGAAG	2 cut(s)	416, 467
Eco88I	CYCGRG	1 cut(s)	1021
EcoICRI	GAGCTC	1 cut(s)	668
EcoO109I	RGGNCCY	1 cut(s)	594
EcoRV	GATATC	1 cut(s)	841
EcoT14I	CCWWGG	1 cut(s)	905
EcoT38I	GRGCYC	1 cut(s)	670
ErhI	CCWWGG	1 cut(s)	905
FaeI	CATG	5 cut(s)	176, 864, 934, 959, 988
FatI	CATG	5 cut(s)	172, 860, 930, 955, 984
FauNDI	CATATG	1 cut(s)	495
FokI	GGATG	1 cut(s)	740
FriOI	GRGCYC	1 cut(s)	670
FspBI	CTAG	5 cut(s)	177, 288, 564, 833, 906
GlaI	GCGC	1 cut(s)	417
HaeIII	GGCC	1 cut(s)	876
HapII	CCGG	1 cut(s)	523
HhaI	GCGC	1 cut(s)	418
Hin1II	CATG	5 cut(s)	176, 864, 934, 959, 988
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HinfI	GANTC	1 cut(s)	58
HpaII	CCGG	1 cut(s)	523
HphI	GGTGA	4 cut(s)	805, 893, 988, 1019
Hpy166II	GTNNAC	1 cut(s)	1010
Hpy188I	TCNGA	1 cut(s)	685
Hpy188III	TCNNGA	6 cut(s)	136, 193, 215, 288, 311, 848
Hpy8I	GTNNAC	1 cut(s)	1010
Hpy99I	CGWCG	1 cut(s)	1051
HpyAV	CCTTC	4 cut(s)	440, 607, 990, 998
HpyCH4IV	ACGT	1 cut(s)	1049
HpyCH4V	TGCA	3 cut(s)	38, 570, 740
HpyF3I	CTNAG	4 cut(s)	69, 229, 297, 341
HpySE526I	ACGT	1 cut(s)	1049
Hsp92II	CATG	5 cut(s)	176, 864, 934, 959, 988
HspAI	GCGC	1 cut(s)	416
Kzo9I	GATC	4 cut(s)	79, 685, 800, 893
LmnI	GCTCC	3 cut(s)	528, 665, 673
LpnPI	CCDG	9 cut(s)	99, 147, 228, 426, 536, 828, 861, 890, 957
LweI	GCATC	2 cut(s)	457, 956
MaeI	CTAG	5 cut(s)	177, 288, 564, 833, 906
MaeII	ACGT	1 cut(s)	1049
MaeIII	GTNAC	4 cut(s)	644, 764, 824, 994
MalI	GATC	4 cut(s)	81, 687, 802, 895
MboI	GATC	4 cut(s)	79, 685, 800, 893
MboII	GAAGA	8 cut(s)	26, 143, 272, 597, 669, 672, 790, 986
MflI	RGATCY	1 cut(s)	893
MhlI	GDGCHC	1 cut(s)	670
MluCI	AATT	7 cut(s)	97, 241, 334, 365, 390, 691, 804
MseI	TTAA	3 cut(s)	101, 323, 807
MspI	CCGG	1 cut(s)	523
MvnI	CGCG	1 cut(s)	719
NdeI	CATATG	1 cut(s)	495
NdeII	GATC	4 cut(s)	79, 685, 800, 893
NlaIII	CATG	5 cut(s)	176, 864, 934, 959, 988
NlaIV	GGNNCC	1 cut(s)	813
NmuCI	GTSAC	2 cut(s)	764, 994
NspI	RCATGY	1 cut(s)	959
PfeI	GAWTC	1 cut(s)	58
PpuMI	RGGWCCY	1 cut(s)	594
Psp124BI	GAGCTC	1 cut(s)	670
Psp5II	RGGWCCY	1 cut(s)	594
PspN4I	GGNNCC	1 cut(s)	813
PspPI	GGNCC	1 cut(s)	594
PspPPI	RGGWCCY	1 cut(s)	594
PsuI	RGATCY	1 cut(s)	893
RsaI	GTAC	4 cut(s)	247, 373, 521, 872
RsaNI	GTAC	4 cut(s)	246, 372, 520, 871
SacI	GAGCTC	1 cut(s)	670
SaqAI	TTAA	3 cut(s)	101, 323, 807
Sau3AI	GATC	4 cut(s)	79, 685, 800, 893
Sau96I	GGNCC	1 cut(s)	594
ScaI	AGTACT	1 cut(s)	373
SduI	GDGCHC	1 cut(s)	670
SfaNI	GCATC	2 cut(s)	457, 956
SinI	GGWCC	1 cut(s)	594
SmlI	CTYRAG	3 cut(s)	191, 309, 610
SmoI	CTYRAG	3 cut(s)	191, 309, 610
Sse9I	AATT	7 cut(s)	97, 241, 334, 365, 390, 691, 804
SsiI	CCGC	4 cut(s)	107, 509, 717, 747
SspMI	CTAG	5 cut(s)	177, 288, 564, 833, 906
SstI	GAGCTC	1 cut(s)	670
StyI	CCWWGG	1 cut(s)	905
TaiI	ACGT	1 cut(s)	1052
TasI	AATT	7 cut(s)	97, 241, 334, 365, 390, 691, 804
TatI	WGTACW	2 cut(s)	245, 371
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	3 cut(s)	101, 323, 807
Tru9I	TTAA	3 cut(s)	101, 323, 807
TscAI	CASTG	3 cut(s)	742, 760, 773
TseFI	GTSAC	2 cut(s)	764, 994
Tsp45I	GTSAC	2 cut(s)	764, 994
TspDTI	ATGAA	4 cut(s)	512, 589, 849, 1017
TspRI	CASTG	3 cut(s)	742, 760, 773
VpaK11BI	GGWCC	1 cut(s)	594
XapI	RAATTY	3 cut(s)	97, 334, 691
XbaI	TCTAGA	1 cut(s)	287
XceI	RCATGY	1 cut(s)	959
XmaJI	CCTAGG	1 cut(s)	905
XspI	CTAG	5 cut(s)	177, 288, 564, 833, 906
ZrmI	AGTACT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.