Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010452

Physical Location & Seq

Genomic Coordinates Forward (+)

13033418 .. 13035797

Gene Structure 2380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G30590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGAGGAGATAGAAGGAACAAACAGAGCAGCTGTTGAGAGTTGTCATAGAGTTCTTAATCTTTTACATAGATCACAGCAACAAGATCATGTTGGTTTTGAAAAGAATTTAGTATCTGAAACTAGAGAAGCTGTGATTAGGTTCAAGAGAGTTGGGAGTTTGTTAAGCAGTAGTGTTGGTCATGCTAGGTTTAGAAGAGCTAAGAAACTTCAGAGTCATGTCTCTCAAAGTCTCTTACTTGATCCATGTCAACAAAGGACAACAGAAGTTCCATCATCATCTTCTCAGAAAACACCGGTACTCCGGTCTGGTTTCCAGGAATTGAGCTTGAGACAACCTTCAGATTCACTCACTTTAGGGACTCGCTCTTTTAGTTTAAACTCAAATGCTAAAGCTCCTCTCCTTCAGCTTAATCAGCAGACAATGCCTCCTTCGAATTATCCTACTTTGTTTCCAGTACAACAACAACAACAACAACAACAACAACAACAACAGCAGGAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGTTTCATGAACGGTTACAAGCTCACCATCTTCATCAGCAACAGCAGCTACAGAAACATCAAGCTGAGCTTATGCTTAGGAAATGCAATGGTGGGATAAGTTTGAGTTTCGATAACTCTAGTTGTACTCCAACTATGTCATCCACTAGGTCCTTTGTTTCTTCACTTAGCATAGATGGTAGTGTTGCTAATATAGAGGGAAAGAACTCCTTCCATTTTGGGGTTCCTAGTTCAACTGATCAGAATTCACTACATTCTAAGAGGAAATGCCCCTTGAAAGGAGATGAACATGGAAGCTTAAAATGCGGGAGCTCTAGCCGATGCCACTGCGCTAAGAAGAGGAAACATCGGGTTAGGAGATCGATTAGAGTACCGGCTATAAGTAACAAGGTTGCAGATATCCCTCCTGATGATTATTCATGGCGAAAATATGGTCAGAAGCCCATCAAGGGCTCTCCTTATCCCAGAGGATATTACAAATGTAGTAGCATGAGAGGTTGTCCAGCGAGGAAGCATGTTGAGAGATGTTTGGAAGATCCGGCAATGCTTATTGTTACTTATGAAGCAGAGCATAACCACCCGAAATTGCCATCTCAAGCTATAACAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

380

Amino Acids

43.0

Weight (kDa)

9.79

Isoelectric Point (pI)

74.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_zn_clust	PF10533	264 - 310	2.4e-17	Plant zinc cluster domain
WRKY	PF03106	314 - 371	1.4e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30590
fragaria_vesca	FvH4_2g22300 FvH4_2g22300 FvH4_2g22300 FvH4_2g22300
malus_domestica	MD05G1204400.v1.1 MD10G1191400.v1.1
prunus_persica	Prupe.8G230700_v2.0.a1
pyrus_communis	pycom05g19070 pycom10g16500
rosa_chinensis	RchiOBHm_Chr6g0289301
rosa_laevigata	RLG00000012315
rosa_multiflora	Rmu_sc0001527.1_g000020
rosa_roxburghii	Rroxscaffold_7G00179360
rosa_rugosa	Rorug06G0202500 Rorug06G0202600
rosa_samantha	Rh6AG313400 Rh6BG320900 Rh6CG327100 Rh6DG312800
rosa_wichuraiana	Rw6G027090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	837
AclWI	GGATC	2 cut(s)	236, 1061
AcsI	RAATTY	2 cut(s)	106, 775
AcuI	CTGAAG	3 cut(s)	194, 324, 389
AfaI	GTAC	4 cut(s)	300, 459, 658, 903
AfiI	CCNNNNNNNGG	3 cut(s)	751, 809, 980
AgeI	ACCGGT	1 cut(s)	295
AgsI	TTSAA	4 cut(s)	101, 145, 765, 808
AjnI	CCWGG	1 cut(s)	315
Alw21I	GWGCWC	1 cut(s)	845
Alw26I	GTCTC	3 cut(s)	226, 236, 325
AlwI	GGATC	2 cut(s)	236, 1061
ApeKI	GCWGC	9 cut(s)	29, 502, 505, 508, 511, 514, 517, 520, 577
ApoI	RAATTY	2 cut(s)	106, 775
ArsI	GACNNNNNNTTYG	2 cut(s)	949, 981
AsiGI	ACCGGT	1 cut(s)	295
Asp700I	GAANNNNTTC	1 cut(s)	740
AspLEI	GCGC	1 cut(s)	863
AspS9I	GGNCC	1 cut(s)	681
AsuHPI	GGTGA	1 cut(s)	548
AsuII	TTCGAA	1 cut(s)	434
AvaII	GGWCC	1 cut(s)	681
BaeI	ACNNNNGTAYC	2 cut(s)	290, 323
BanII	GRGCYC	2 cut(s)	845, 986
Bbv12I	GWGCWC	1 cut(s)	845
BbvI	GCAGC	9 cut(s)	41, 514, 517, 520, 523, 526, 529, 532, 589
BccI	CCATC	5 cut(s)	280, 567, 701, 983, 1129
BcgI	CGANNNNNNTGC	2 cut(s)	840, 874
BciT130I	CCWGG	1 cut(s)	317
BclI	TGATCA	1 cut(s)	769
BcoDI	GTCTC	3 cut(s)	226, 236, 325
BfaI	CTAG	6 cut(s)	123, 186, 651, 678, 759, 846
BfmI	CTRYAG	1 cut(s)	581
BisI	GCNGC	9 cut(s)	30, 503, 506, 509, 512, 515, 518, 521, 578
BlpI	GCTNAGC	1 cut(s)	597
BlsI	GCNGC	9 cut(s)	31, 504, 507, 510, 513, 516, 519, 522, 579
Bme1390I	CCNGG	1 cut(s)	317
Bme18I	GGWCC	1 cut(s)	681
BmgT120I	GGNCC	1 cut(s)	681
BmiI	GGNNCC	1 cut(s)	756
BmrFI	CCNGG	1 cut(s)	317
BmsI	GCATC	1 cut(s)	842
Bpu10I	CCTNAGC	1 cut(s)	608
Bpu1102I	GCTNAGC	1 cut(s)	597
Bpu14I	TTCGAA	1 cut(s)	434
BpuEI	CTTGAG	2 cut(s)	349, 1110
Bsa29I	ATCGAT	1 cut(s)	893
BsaWI	WCCGGW	2 cut(s)	295, 303
BsaXI	ACNNNNNCTCC	4 cut(s)	285, 315, 412, 442
Bsc4I	CCNNNNNNNGG	3 cut(s)	751, 809, 980
Bse118I	RCCGGY	2 cut(s)	295, 904
Bse1I	ACTGG	1 cut(s)	455
Bse3DI	GCAATG	2 cut(s)	625, 1080
BseBI	CCWGG	1 cut(s)	317
BseCI	ATCGAT	1 cut(s)	893
BseGI	GGATG	1 cut(s)	671
BseLI	CCNNNNNNNGG	3 cut(s)	751, 809, 980
BseMI	GCAATG	2 cut(s)	625, 1080
BseMII	CTCAG	2 cut(s)	299, 588
BseNI	ACTGG	1 cut(s)	455
BseRI	GAGGAG	2 cut(s)	20, 387
BseXI	GCAGC	9 cut(s)	41, 514, 517, 520, 523, 526, 529, 532, 589
BshTI	ACCGGT	1 cut(s)	295
BshVI	ATCGAT	1 cut(s)	893
BsiHKAI	GWGCWC	1 cut(s)	845
BsiSI	CCGG	4 cut(s)	296, 304, 905, 1070
BslFI	GGGAC	1 cut(s)	373
BslI	CCNNNNNNNGG	3 cut(s)	751, 809, 980
BsmAI	GTCTC	3 cut(s)	226, 236, 325
BsmFI	GGGAC	1 cut(s)	373
Bsp119I	TTCGAA	1 cut(s)	434
Bsp1286I	GDGCHC	2 cut(s)	845, 986
Bsp143I	GATC	6 cut(s)	71, 85, 241, 769, 890, 1066
Bsp1720I	GCTNAGC	1 cut(s)	597
BspACI	CCGC	1 cut(s)	837
BspCNI	CTCAG	2 cut(s)	298, 589
BspDI	ATCGAT	1 cut(s)	893
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	1 cut(s)	756
BspPI	GGATC	2 cut(s)	236, 1061
BspQI	GCTCTTC	1 cut(s)	190
BspT104I	TTCGAA	1 cut(s)	434
BsrDI	GCAATG	2 cut(s)	625, 1080
BsrFI	RCCGGY	2 cut(s)	295, 904
BsrI	ACTGG	1 cut(s)	455
BssAI	RCCGGY	2 cut(s)	295, 904
BssMI	GATC	6 cut(s)	71, 85, 241, 769, 890, 1066
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	2 cut(s)	534, 546
Bst6I	CTCTTC	2 cut(s)	190, 863
BstAPI	GCANNNNNTGC	1 cut(s)	424
BstBI	TTCGAA	1 cut(s)	434
BstDEI	CTNAG	7 cut(s)	201, 285, 597, 608, 698, 789, 864
BstF5I	GGATG	1 cut(s)	671
BstHHI	GCGC	1 cut(s)	863
BstKTI	GATC	6 cut(s)	74, 88, 244, 772, 893, 1069
BstMAI	GTCTC	3 cut(s)	226, 236, 325
BstMBI	GATC	6 cut(s)	71, 85, 241, 769, 890, 1066
BstNI	CCWGG	1 cut(s)	317
BstNSI	RCATGY	1 cut(s)	1049
BstSCI	CCNGG	1 cut(s)	315
BstSFI	CTRYAG	1 cut(s)	581
BstV1I	GCAGC	9 cut(s)	41, 514, 517, 520, 523, 526, 529, 532, 589
BstX2I	RGATCY	1 cut(s)	1066
BstYI	RGATCY	1 cut(s)	1066
Bsu15I	ATCGAT	1 cut(s)	893
BsuTUI	ATCGAT	1 cut(s)	893
BtsCI	GGATG	1 cut(s)	671
BtsI	GCAGTG	1 cut(s)	856
BtsIMutI	CAGTG	1 cut(s)	856
CciI	TCATGA	1 cut(s)	538
CfoI	GCGC	1 cut(s)	863
Cfr10I	RCCGGY	2 cut(s)	295, 904
Cfr13I	GGNCC	1 cut(s)	681
ClaI	ATCGAT	1 cut(s)	893
Csp6I	GTAC	4 cut(s)	299, 458, 657, 902
CspAI	ACCGGT	1 cut(s)	295
CviAII	CATG	9 cut(s)	89, 182, 218, 246, 539, 821, 951, 1021, 1046
CviQI	GTAC	4 cut(s)	299, 458, 657, 902
DdeI	CTNAG	7 cut(s)	201, 285, 597, 608, 698, 789, 864
DpnI	GATC	6 cut(s)	73, 87, 243, 771, 892, 1068
DpnII	GATC	6 cut(s)	71, 85, 241, 769, 890, 1066
DraI	TTTAAA	1 cut(s)	378
Eam1104I	CTCTTC	2 cut(s)	190, 863
EarI	CTCTTC	2 cut(s)	190, 863
Ecl136II	GAGCTC	1 cut(s)	843
Eco24I	GRGCYC	2 cut(s)	845, 986
Eco32I	GATATC	1 cut(s)	931
Eco47I	GGWCC	1 cut(s)	681
Eco53kI	GAGCTC	1 cut(s)	843
Eco57I	CTGAAG	3 cut(s)	194, 324, 389
EcoICRI	GAGCTC	1 cut(s)	843
EcoO109I	RGGNCCY	1 cut(s)	681
EcoRI	GAATTC	1 cut(s)	775
EcoRII	CCWGG	1 cut(s)	315
EcoRV	GATATC	1 cut(s)	931
EcoT38I	GRGCYC	2 cut(s)	845, 986
FaeI	CATG	9 cut(s)	92, 185, 221, 249, 542, 824, 954, 1024, 1049
FalI	AAGNNNNNCTT	4 cut(s)	585, 617, 725, 757
FaqI	GGGAC	1 cut(s)	373
FatI	CATG	9 cut(s)	88, 181, 217, 245, 538, 820, 950, 1020, 1045
FauI	CCCGC	1 cut(s)	830
FbaI	TGATCA	1 cut(s)	769
Fnu4HI	GCNGC	9 cut(s)	30, 503, 506, 509, 512, 515, 518, 521, 578
FokI	GGATG	1 cut(s)	658
FriOI	GRGCYC	2 cut(s)	845, 986
Fsp4HI	GCNGC	9 cut(s)	30, 503, 506, 509, 512, 515, 518, 521, 578
FspBI	CTAG	6 cut(s)	123, 186, 651, 678, 759, 846
GlaI	GCGC	1 cut(s)	862
GluI	GCNGC	9 cut(s)	30, 503, 506, 509, 512, 515, 518, 521, 578
HapII	CCGG	4 cut(s)	296, 304, 905, 1070
HhaI	GCGC	1 cut(s)	863
Hin1II	CATG	9 cut(s)	92, 185, 221, 249, 542, 824, 954, 1024, 1049
Hin6I	GCGC	1 cut(s)	861
HinP1I	GCGC	1 cut(s)	861
HincII	GTYRAC	1 cut(s)	251
HindII	GTYRAC	1 cut(s)	251
HindIII	AAGCTT	1 cut(s)	826
HinfI	GANTC	3 cut(s)	214, 344, 361
HpaII	CCGG	4 cut(s)	296, 304, 905, 1070
HphI	GGTGA	1 cut(s)	548
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188I	TCNGA	6 cut(s)	118, 213, 288, 343, 774, 969
Hpy188III	TCNNGA	3 cut(s)	145, 539, 938
Hpy8I	GTNNAC	1 cut(s)	251
HpyAV	CCTTC	5 cut(s)	8, 348, 413, 441, 751
HpyCH4III	ACNGT	2 cut(s)	534, 546
HpyCH4V	TGCA	2 cut(s)	618, 926
HpyF3I	CTNAG	7 cut(s)	201, 285, 597, 608, 698, 789, 864
Hsp92II	CATG	9 cut(s)	92, 185, 221, 249, 542, 824, 954, 1024, 1049
HspAI	GCGC	1 cut(s)	861
Ksp22I	TGATCA	1 cut(s)	769
Kzo9I	GATC	6 cut(s)	71, 85, 241, 769, 890, 1066
LguI	GCTCTTC	1 cut(s)	190
LmnI	GCTCC	3 cut(s)	400, 499, 840
Lsp1109I	GCAGC	9 cut(s)	41, 514, 517, 520, 523, 526, 529, 532, 589
LweI	GCATC	1 cut(s)	842
MaeI	CTAG	6 cut(s)	123, 186, 651, 678, 759, 846
MaeIII	GTNAC	3 cut(s)	546, 914, 1084
MalI	GATC	6 cut(s)	73, 87, 243, 771, 892, 1068
MboI	GATC	6 cut(s)	71, 85, 241, 769, 890, 1066
MboII	GAAGA	6 cut(s)	207, 273, 554, 684, 880, 1076
MflI	RGATCY	1 cut(s)	1066
MhlI	GDGCHC	2 cut(s)	845, 986
MluCI	AATT	5 cut(s)	106, 320, 436, 775, 1115
MlyI	GAGTC	2 cut(s)	223, 355
MmeI	TCCRAC	1 cut(s)	686
MnlI	CCTC	9 cut(s)	408, 438, 721, 786, 864, 945, 992, 1019, 1032
MroXI	GAANNNNTTC	1 cut(s)	740
MseI	TTAA	6 cut(s)	57, 164, 377, 411, 830, 1141
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	4 cut(s)	296, 304, 905, 1070
MspR9I	CCNGG	1 cut(s)	317
MssI	GTTTAAAC	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	317
NdeII	GATC	6 cut(s)	71, 85, 241, 769, 890, 1066
NlaIII	CATG	9 cut(s)	92, 185, 221, 249, 542, 824, 954, 1024, 1049
NlaIV	GGNNCC	1 cut(s)	756
NspI	RCATGY	1 cut(s)	1049
NspV	TTCGAA	1 cut(s)	434
PagI	TCATGA	1 cut(s)	538
PciSI	GCTCTTC	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	740
PfeI	GAWTC	1 cut(s)	344
PfoI	TCCNGGA	1 cut(s)	315
PinAI	ACCGGT	1 cut(s)	295
PkrI	GCNGC	9 cut(s)	31, 504, 507, 510, 513, 516, 519, 522, 579
PleI	GAGTC	2 cut(s)	222, 355
PmeI	GTTTAAAC	1 cut(s)	378
PpsI	GAGTC	2 cut(s)	222, 355
PpuMI	RGGWCCY	1 cut(s)	681
Psp124BI	GAGCTC	1 cut(s)	845
Psp5II	RGGWCCY	1 cut(s)	681
Psp6I	CCWGG	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	756
PspPI	GGNCC	1 cut(s)	681
PspPPI	RGGWCCY	1 cut(s)	681
PsuI	RGATCY	1 cut(s)	1066
PvuII	CAGCTG	1 cut(s)	32
RsaI	GTAC	4 cut(s)	300, 459, 658, 903
RsaNI	GTAC	4 cut(s)	299, 458, 657, 902
SacI	GAGCTC	1 cut(s)	845
SapI	GCTCTTC	1 cut(s)	190
SaqAI	TTAA	6 cut(s)	57, 164, 377, 411, 830, 1141
SatI	GCNGC	9 cut(s)	30, 503, 506, 509, 512, 515, 518, 521, 578
Sau3AI	GATC	6 cut(s)	71, 85, 241, 769, 890, 1066
Sau96I	GGNCC	1 cut(s)	681
SchI	GAGTC	2 cut(s)	223, 355
ScrFI	CCNGG	1 cut(s)	317
SduI	GDGCHC	2 cut(s)	845, 986
SfaNI	GCATC	1 cut(s)	842
SfcI	CTRYAG	1 cut(s)	581
SfuI	TTCGAA	1 cut(s)	434
SinI	GGWCC	1 cut(s)	681
SmlI	CTYRAG	2 cut(s)	328, 1125
SmoI	CTYRAG	2 cut(s)	328, 1125
Sse9I	AATT	5 cut(s)	106, 320, 436, 775, 1115
SsiI	CCGC	1 cut(s)	837
SspMI	CTAG	6 cut(s)	123, 186, 651, 678, 759, 846
SstI	GAGCTC	1 cut(s)	845
StyD4I	CCNGG	1 cut(s)	315
TaaI	ACNGT	2 cut(s)	534, 546
TaqI	TCGA	3 cut(s)	434, 642, 893
TasI	AATT	5 cut(s)	106, 320, 436, 775, 1115
TatI	WGTACW	2 cut(s)	457, 656
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	6 cut(s)	57, 164, 377, 411, 830, 1141
Tru9I	TTAA	6 cut(s)	57, 164, 377, 411, 830, 1141
TscAI	CASTG	1 cut(s)	863
TseI	GCWGC	9 cut(s)	29, 502, 505, 508, 511, 514, 517, 520, 577
TspDTI	ATGAA	6 cut(s)	527, 554, 555, 831, 939, 1107
TspRI	CASTG	1 cut(s)	863
VpaK11BI	GGWCC	1 cut(s)	681
XapI	RAATTY	2 cut(s)	106, 775
XceI	RCATGY	1 cut(s)	1049
XmnI	GAANNNNTTC	1 cut(s)	740
XspI	CTAG	6 cut(s)	123, 186, 651, 678, 759, 846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.