Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010452

Physical Location & Seq

Genomic Coordinates Reverse (-)

21978228 .. 21980136

Gene Structure 1909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g19070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGAGGAAGTTGAAGAAGCTAACAAAGCAGCTGTTGAGAGCTGCCATAGAGTTCTTAGCCTCTTGTCTCAGCCACAGGATCAAGTTCAGTATAGGAATCTAATGGTGGAAACTGGAAAGGCAGTGTCTAGGTTTAAGAAAGTTATATCCATTCTCAATACTGGTTTAGGTCATGCTAGAGTTAGAAAGCTCAAGAAGCTTCAAATCCCTTTTCCTGAAAGAATCCTTTTGGATAATCCTAACTCGATTGGGGACCGTCCATCCAAAACTCCCCACTTTCTTCAATCTAGATTTCCTGAAAACCCAACTCAAGATTTGAGTTTAGATGTTAAAAGTTCCTTGTGTTTGGGGAATCCATCGTTGGAATTGAGTGCTAATGGGAAAACCCCAATTCATCCGGCCCAACAAGTGCCGCCGGCGCAATATCACTTCTTTCAGCAACAACAGCAGCAGCAACGTCAACAACAACAGCAACAGCATCAGCAGCAGAGGATGTTACTTCAGCAGCAGCAGATGAAGCCCCAAACAGAAATGATGTATCGTAGGAGCAATAGCGGCATAAATCTGAATTTTGATAGCTCTAGCTACACACCTACAATGTCATCTACGAGATCGATCATTTCTTCCTTGAGCATAGATGGAAGTGTGGCTAACTTCGATGGTAATTCCTTCCATTTGATCGGGGCTCCTATCTCTTCAGATCAGAATTCACATCACAAGAGGAAGTGTTCTGCTAGGGGAGACGATGGGAGTGTTAAATGCGTTGGTAGCAGTGGTAGATGTCACTGCTCAAAGAAGAGGAAGCATAGGGTGAAAAGGTCAATTAAGGTGCCTGCTATCAGTAACAAGCTTGCAGATATCCCTCCTGATGATTATTCATGGCGGAAATATGGCCAGAAGCCAATCAAGGGTTCCCCTCACCCTAGGGGATACTATAAATGCAGTAGCATGAGAGGTTGTCCAGCAAGGAAGCATGTCGAGAGGTGCTTGGAAGAACCCTCGATGCTTATTGTTACCTATGAAGGTGAGCATAACCACCCAAGGATACCATCGCAATCCACAACAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

357

Amino Acids

40.22

Weight (kDa)

9.75

Isoelectric Point (pI)

56.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_zn_clust	PF10533	240 - 286	1.1e-17	Plant zinc cluster domain
WRKY	PF03106	290 - 347	3.5e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30590
fragaria_vesca	FvH4_2g22300 FvH4_2g22300 FvH4_2g22300 FvH4_2g22300
malus_domestica	MD05G1204400.v1.1 MD10G1191400.v1.1
prunus_persica	Prupe.8G230700_v2.0.a1
pyrus_communis	pycom05g19070 pycom10g16500
rosa_chinensis	RchiOBHm_Chr6g0289301
rosa_laevigata	RLG00000012315
rosa_multiflora	Rmu_sc0001527.1_g000020
rosa_roxburghii	Rroxscaffold_7G00179360
rosa_rugosa	Rorug06G0202500 Rorug06G0202600
rosa_samantha	Rh6AG313400 Rh6BG320900 Rh6CG327100 Rh6DG312800
rosa_wichuraiana	Rw6G027090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	829
AciI	CCGC	3 cut(s)	413, 555, 883
AclWI	GGATC	1 cut(s)	87
AcoI	YGGCCR	1 cut(s)	892
AcsI	RAATTY	2 cut(s)	568, 706
AcuI	CTGAAG	2 cut(s)	485, 681
AfiI	CCNNNNNNNGG	1 cut(s)	908
AgsI	TTSAA	3 cut(s)	14, 203, 284
AjuI	GAANNNNNNNTTGG	4 cut(s)	344, 376, 895, 927
AluBI	AGCT	8 cut(s)	20, 32, 42, 190, 199, 579, 585, 850
AluI	AGCT	8 cut(s)	20, 32, 42, 190, 199, 579, 585, 850
Alw26I	GTCTC	2 cut(s)	72, 735
AlwI	GGATC	1 cut(s)	87
AoxI	GGCC	2 cut(s)	399, 892
ApeKI	GCWGC	7 cut(s)	29, 42, 448, 451, 484, 505, 508
ApoI	RAATTY	2 cut(s)	568, 706
AspA2I	CCTAGG	1 cut(s)	923
AspLEI	GCGC	1 cut(s)	421
AspS9I	GGNCC	2 cut(s)	253, 400
AsuHPI	GGTGA	3 cut(s)	823, 911, 1037
AvaII	GGWCC	1 cut(s)	253
AvrII	CCTAGG	1 cut(s)	923
BalI	TGGCCA	1 cut(s)	894
BanI	GGYRCC	1 cut(s)	829
BanII	GRGCYC	1 cut(s)	688
BbvI	GCAGC	7 cut(s)	29, 41, 460, 463, 496, 517, 520
BccI	CCATC	6 cut(s)	268, 364, 632, 653, 740, 1057
BciVI	GTATCC	2 cut(s)	923, 1038
BcoDI	GTCTC	2 cut(s)	72, 735
BfaI	CTAG	6 cut(s)	129, 177, 288, 582, 735, 924
BfuI	GTATCC	2 cut(s)	923, 1038
BisI	GCNGC	9 cut(s)	30, 43, 413, 449, 452, 485, 506, 509, 556
BlnI	CCTAGG	1 cut(s)	923
BlsI	GCNGC	9 cut(s)	31, 44, 414, 450, 453, 486, 507, 510, 557
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	2 cut(s)	253, 400
BmiI	GGNNCC	4 cut(s)	254, 687, 831, 913
BmsI	GCATC	2 cut(s)	487, 993
BpuEI	CTTGAG	3 cut(s)	176, 294, 649
Bsa29I	ATCGAT	1 cut(s)	614
BsaJI	CCNNGG	2 cut(s)	923, 1040
Bsc4I	CCNNNNNNNGG	1 cut(s)	908
Bse118I	RCCGGY	1 cut(s)	415
Bse1I	ACTGG	2 cut(s)	118, 166
BseCI	ATCGAT	1 cut(s)	614
BseDI	CCNNGG	2 cut(s)	923, 1040
BseGI	GGATG	3 cut(s)	260, 394, 498
BseLI	CCNNNNNNNGG	1 cut(s)	908
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	2 cut(s)	118, 166
BseXI	GCAGC	7 cut(s)	29, 41, 460, 463, 496, 517, 520
BshFI	GGCC	2 cut(s)	401, 894
BshNI	GGYRCC	1 cut(s)	829
BshVI	ATCGAT	1 cut(s)	614
BsiSI	CCGG	2 cut(s)	398, 416
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	1 cut(s)	908
BsmAI	GTCTC	2 cut(s)	72, 735
BsmBI	CGTCTC	1 cut(s)	735
BsmFI	GGGAC	1 cut(s)	266
BsnI	GGCC	2 cut(s)	401, 894
Bsp1286I	GDGCHC	1 cut(s)	688
Bsp143I	GATC	5 cut(s)	79, 611, 615, 678, 700
BspACI	CCGC	3 cut(s)	413, 555, 883
BspANI	GGCC	2 cut(s)	401, 894
BspCNI	CTCAG	1 cut(s)	82
BspDI	ATCGAT	1 cut(s)	614
BspLI	GGNNCC	4 cut(s)	254, 687, 831, 913
BspPI	GGATC	1 cut(s)	87
BspT107I	GGYRCC	1 cut(s)	829
BsrFI	RCCGGY	1 cut(s)	415
BsrI	ACTGG	2 cut(s)	118, 166
BssAI	RCCGGY	1 cut(s)	415
BssECI	CCNNGG	2 cut(s)	923, 1040
BssMI	GATC	5 cut(s)	79, 611, 615, 678, 700
BssT1I	CCWWGG	2 cut(s)	923, 1040
Bst4CI	ACNGT	1 cut(s)	257
Bst6I	CTCTTC	2 cut(s)	700, 791
BstC8I	GCNNGC	3 cut(s)	417, 834, 852
BstDEI	CTNAG	2 cut(s)	56, 69
BstF5I	GGATG	3 cut(s)	260, 394, 498
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	5 cut(s)	82, 614, 618, 681, 703
BstMAI	GTCTC	2 cut(s)	72, 735
BstMBI	GATC	5 cut(s)	79, 611, 615, 678, 700
BstMWI	GCNNNNNNNGC	8 cut(s)	26, 196, 418, 445, 484, 517, 555, 768
BstNSI	RCATGY	1 cut(s)	977
BstV1I	GCAGC	7 cut(s)	29, 41, 460, 463, 496, 517, 520
Bsu15I	ATCGAT	1 cut(s)	614
BsuI	GTATCC	2 cut(s)	923, 1038
BsuRI	GGCC	2 cut(s)	401, 894
BsuTUI	ATCGAT	1 cut(s)	614
BtgZI	GCGATG	1 cut(s)	1035
BtsCI	GGATG	3 cut(s)	260, 394, 498
BtsI	GCAGTG	3 cut(s)	129, 778, 784
BtsIMutI	CAGTG	3 cut(s)	129, 778, 784
Cac8I	GCNNGC	3 cut(s)	417, 834, 852
CfoI	GCGC	1 cut(s)	421
Cfr10I	RCCGGY	1 cut(s)	415
Cfr13I	GGNCC	2 cut(s)	253, 400
ClaI	ATCGAT	1 cut(s)	614
CviAII	CATG	4 cut(s)	173, 879, 949, 974
DdeI	CTNAG	2 cut(s)	56, 69
DpnI	GATC	5 cut(s)	81, 613, 617, 680, 702
DpnII	GATC	5 cut(s)	79, 611, 615, 678, 700
EaeI	YGGCCR	1 cut(s)	892
Eam1104I	CTCTTC	2 cut(s)	700, 791
EarI	CTCTTC	2 cut(s)	700, 791
EciI	GGCGGA	1 cut(s)	898
Eco130I	CCWWGG	2 cut(s)	923, 1040
Eco24I	GRGCYC	1 cut(s)	688
Eco32I	GATATC	1 cut(s)	859
Eco47I	GGWCC	1 cut(s)	253
Eco57I	CTGAAG	2 cut(s)	485, 681
EcoRI	GAATTC	1 cut(s)	706
EcoRV	GATATC	1 cut(s)	859
EcoT14I	CCWWGG	2 cut(s)	923, 1040
EcoT38I	GRGCYC	1 cut(s)	688
ErhI	CCWWGG	2 cut(s)	923, 1040
Esp3I	CGTCTC	1 cut(s)	735
FaeI	CATG	4 cut(s)	176, 882, 952, 977
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	4 cut(s)	172, 878, 948, 973
Fnu4HI	GCNGC	9 cut(s)	30, 43, 413, 449, 452, 485, 506, 509, 556
FokI	GGATG	3 cut(s)	247, 381, 505
FriOI	GRGCYC	1 cut(s)	688
Fsp4HI	GCNGC	9 cut(s)	30, 43, 413, 449, 452, 485, 506, 509, 556
FspBI	CTAG	6 cut(s)	129, 177, 288, 582, 735, 924
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	9 cut(s)	30, 43, 413, 449, 452, 485, 506, 509, 556
HaeIII	GGCC	2 cut(s)	401, 894
HapII	CCGG	2 cut(s)	398, 416
HhaI	GCGC	1 cut(s)	421
Hin1II	CATG	4 cut(s)	176, 882, 952, 977
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HincII	GTYRAC	1 cut(s)	461
HindII	GTYRAC	1 cut(s)	461
HindIII	AAGCTT	2 cut(s)	197, 848
HinfI	GANTC	3 cut(s)	97, 222, 352
HpaII	CCGG	2 cut(s)	398, 416
HphI	GGTGA	3 cut(s)	823, 911, 1037
Hpy166II	GTNNAC	1 cut(s)	461
Hpy188I	TCNGA	3 cut(s)	567, 700, 705
Hpy188III	TCNNGA	7 cut(s)	193, 215, 288, 296, 311, 866, 979
Hpy8I	GTNNAC	1 cut(s)	461
HpyAV	CCTTC	2 cut(s)	679, 1016
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4IV	ACGT	2 cut(s)	457, 1067
HpyCH4V	TGCA	2 cut(s)	854, 942
HpyF10VI	GCNNNNNNNGC	8 cut(s)	26, 196, 418, 445, 484, 517, 555, 768
HpyF3I	CTNAG	2 cut(s)	56, 69
HpySE526I	ACGT	2 cut(s)	457, 1067
Hsp92II	CATG	4 cut(s)	176, 882, 952, 977
HspAI	GCGC	1 cut(s)	419
KroI	GCCGGC	1 cut(s)	415
KroNI	GCCGGC	1 cut(s)	417
Kzo9I	GATC	5 cut(s)	79, 611, 615, 678, 700
LmnI	GCTCC	2 cut(s)	546, 691
Lsp1109I	GCAGC	7 cut(s)	29, 41, 460, 463, 496, 517, 520
LweI	GCATC	2 cut(s)	487, 993
MaeI	CTAG	6 cut(s)	129, 177, 288, 582, 735, 924
MaeII	ACGT	2 cut(s)	457, 1067
MaeIII	GTNAC	4 cut(s)	495, 782, 842, 1012
MalI	GATC	5 cut(s)	81, 613, 617, 680, 702
MboI	GATC	5 cut(s)	79, 611, 615, 678, 700
MboII	GAAGA	6 cut(s)	26, 272, 615, 687, 808, 1004
MhlI	GDGCHC	1 cut(s)	688
MlsI	TGGCCA	1 cut(s)	894
MluCI	AATT	6 cut(s)	365, 390, 568, 664, 706, 822
MluNI	TGGCCA	1 cut(s)	894
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	9 cut(s)	71, 483, 714, 792, 873, 927, 947, 975, 1009
Mox20I	TGGCCA	1 cut(s)	894
MreI	CGCCGGCG	1 cut(s)	415
MroNI	GCCGGC	1 cut(s)	415
MscI	TGGCCA	1 cut(s)	894
MseI	TTAA	4 cut(s)	135, 330, 756, 825
Msp20I	TGGCCA	1 cut(s)	894
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	2 cut(s)	398, 416
MwoI	GCNNNNNNNGC	8 cut(s)	26, 196, 418, 445, 484, 517, 555, 768
NaeI	GCCGGC	1 cut(s)	417
NdeII	GATC	5 cut(s)	79, 611, 615, 678, 700
NgoMIV	GCCGGC	1 cut(s)	415
NlaIII	CATG	4 cut(s)	176, 882, 952, 977
NlaIV	GGNNCC	4 cut(s)	254, 687, 831, 913
NmuCI	GTSAC	1 cut(s)	782
NspI	RCATGY	1 cut(s)	977
PdiI	GCCGGC	1 cut(s)	417
PfeI	GAWTC	3 cut(s)	97, 222, 352
PkrI	GCNGC	9 cut(s)	31, 44, 414, 450, 453, 486, 507, 510, 557
PspN4I	GGNNCC	4 cut(s)	254, 687, 831, 913
PspPI	GGNCC	2 cut(s)	253, 400
PvuII	CAGCTG	1 cut(s)	32
SaqAI	TTAA	4 cut(s)	135, 330, 756, 825
SatI	GCNGC	9 cut(s)	30, 43, 413, 449, 452, 485, 506, 509, 556
Sau3AI	GATC	5 cut(s)	79, 611, 615, 678, 700
Sau96I	GGNCC	2 cut(s)	253, 400
SduI	GDGCHC	1 cut(s)	688
SfaNI	GCATC	2 cut(s)	487, 993
SgrAI	CRCCGGYG	1 cut(s)	415
SinI	GGWCC	1 cut(s)	253
SmlI	CTYRAG	3 cut(s)	191, 309, 628
SmoI	CTYRAG	3 cut(s)	191, 309, 628
Sse9I	AATT	6 cut(s)	365, 390, 568, 664, 706, 822
SsiI	CCGC	3 cut(s)	413, 555, 883
SspMI	CTAG	6 cut(s)	129, 177, 288, 582, 735, 924
StyI	CCWWGG	2 cut(s)	923, 1040
TaaI	ACNGT	1 cut(s)	257
TaiI	ACGT	2 cut(s)	460, 1070
TaqI	TCGA	5 cut(s)	245, 614, 657, 978, 1001
TasI	AATT	6 cut(s)	365, 390, 568, 664, 706, 822
TauI	GCSGC	2 cut(s)	415, 558
TfiI	GAWTC	3 cut(s)	97, 222, 352
Tru1I	TTAA	4 cut(s)	135, 330, 756, 825
Tru9I	TTAA	4 cut(s)	135, 330, 756, 825
TscAI	CASTG	3 cut(s)	129, 778, 791
TseFI	GTSAC	1 cut(s)	782
TseI	GCWGC	7 cut(s)	29, 42, 448, 451, 484, 505, 508
Tsp45I	GTSAC	1 cut(s)	782
TspDTI	ATGAA	4 cut(s)	383, 530, 867, 1035
TspRI	CASTG	3 cut(s)	129, 778, 791
VpaK11BI	GGWCC	1 cut(s)	253
XapI	RAATTY	2 cut(s)	568, 706
XbaI	TCTAGA	1 cut(s)	287
XceI	RCATGY	1 cut(s)	977
XmaJI	CCTAGG	1 cut(s)	923
XspI	CTAG	6 cut(s)	129, 177, 288, 582, 735, 924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.