Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010452

Physical Location & Seq

Genomic Coordinates Reverse (-)

18316811 .. 18320192

Gene Structure 3382 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g22300.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGAGGAAGTTGAAGAAGCTAACAAAGCTGCTGTTGCAAGCTGCCATAGAGTTTTGAGTCTGTTGTCTCAGCCCCAAGATCGAGTTCAGTTTAGGAATTTAGAGGTGGAAACTGGGAAGGCTGTGTTTAGGTTCAAGAAAGTTGTTTCTCTTCTCAATACTGGTTTGGGTCATGCTAGAGTTAGAAAGCTTAAGAAGCTTCAAATCCCTTTTCCTGAAAGTGTCCTCTTAGATAATCCTAATTGTACAACAGACCATCACTCCAAAACTCCTCACTTTCTTCAGTCTAGATTTGCTGAGAATCCAAGTCAGGATTTGAGTTTAGGTGTTAGGAATTCCTTAAGTTTGGGAAACCCCTCTTTGGAATTGAGCACTAATAATGGGAAAACCCCAATTCAACTAGCACAACAAGCACTTCCTCCAGCGCACTATCACTTCCTTCAGCAGCAACAACAGCAGCAGCAGAGGCTATTACTTCAGCAGCAGCAGATGAAACAACAAGCGGAAATGATGTACCGGAGGAGCAATAGTGGCATAAACCTCAACTTCGATAGCTCTAGCTGCACACCCACAATGTCATCCACAAGGTCCTTCATTTCCTCCTTGAGCATAGATGGAAGTGTGGCTAACTTGGACGGTAACTCCTTCCATTTGATTGGGGCTCCTATCTCTTCAGATCAGAATTCACAACATAAGAGGAAGTGTTCCGCGAGGGGAGATGATGGCAGTGCAAAATGTGGTAGCAGTGGTAGATGTCACTGCTCAAAGAAGAGGAAACATAGGGTGAAAAGATCAATTAAGGTGCCTGCAATTAGTAACAAGCTAGCGGATATCCCTCCCGATGATTATTCATGGAGGAAGTACGGCCAGAAGCCAATCAAGGGTTCACCTCACCCTAGGGGATACTATAAATGTAGTAGCATGAGAGGCTGTCCAGCCAGGAAGCATGTGGAGAGATGCTTGGAAGAACCTTCTATGCTTATTGTCACTTATGAAGGCGAACATAACCACCCCAGGATACCATCACAATCCACAACGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

348

Amino Acids

38.82

Weight (kDa)

9.71

Isoelectric Point (pI)

56.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_zn_clust	PF10533	232 - 277	4.8e-18	Plant zinc cluster domain
WRKY	PF03106	281 - 338	3.4e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30590
fragaria_vesca	FvH4_2g22300 FvH4_2g22300 FvH4_2g22300 FvH4_2g22300
malus_domestica	MD05G1204400.v1.1 MD10G1191400.v1.1
prunus_persica	Prupe.8G230700_v2.0.a1
pyrus_communis	pycom05g19070 pycom10g16500
rosa_chinensis	RchiOBHm_Chr6g0289301
rosa_laevigata	RLG00000012315
rosa_multiflora	Rmu_sc0001527.1_g000020
rosa_roxburghii	Rroxscaffold_7G00179360
rosa_rugosa	Rorug06G0202500 Rorug06G0202600
rosa_samantha	Rh6AG313400 Rh6BG320900 Rh6CG327100 Rh6DG312800
rosa_wichuraiana	Rw6G027090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	802
AccII	CGCG	1 cut(s)	710
AciI	CCGC	3 cut(s)	503, 708, 827
AcoI	YGGCCR	1 cut(s)	865
AcsI	RAATTY	3 cut(s)	97, 334, 682
AcuI	CTGAAG	4 cut(s)	266, 425, 461, 657
AfaI	GTAC	3 cut(s)	247, 515, 863
AfiI	CCNNNNNNNGG	2 cut(s)	361, 881
AflII	CTTAAG	2 cut(s)	191, 340
AgsI	TTSAA	4 cut(s)	14, 136, 203, 398
AjnI	CCWGG	2 cut(s)	938, 1013
AjuI	GAANNNNNNNTTGG	4 cut(s)	69, 101, 868, 900
AluBI	AGCT	8 cut(s)	20, 29, 42, 190, 199, 555, 561, 823
AluI	AGCT	8 cut(s)	20, 29, 42, 190, 199, 555, 561, 823
Alw21I	GWGCWC	1 cut(s)	374
Alw26I	GTCTC	1 cut(s)	72
AoxI	GGCC	1 cut(s)	865
ApeKI	GCWGC	8 cut(s)	29, 42, 445, 457, 460, 481, 484, 561
ApoI	RAATTY	3 cut(s)	97, 334, 682
AspA2I	CCTAGG	1 cut(s)	896
AspLEI	GCGC	1 cut(s)	427
AspS9I	GGNCC	1 cut(s)	588
AsuHPI	GGTGA	3 cut(s)	796, 879, 884
AsuNHI	GCTAGC	1 cut(s)	823
AvaII	GGWCC	1 cut(s)	588
AvrII	CCTAGG	1 cut(s)	896
BanI	GGYRCC	1 cut(s)	802
BanII	GRGCYC	1 cut(s)	664
Bbv12I	GWGCWC	1 cut(s)	374
BbvI	GCAGC	8 cut(s)	16, 29, 457, 469, 472, 493, 496, 548
BccI	CCATC	4 cut(s)	264, 608, 716, 1030
BceAI	ACGGC	1 cut(s)	880
BciT130I	CCWGG	2 cut(s)	940, 1015
BciVI	GTATCC	2 cut(s)	896, 1011
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	6 cut(s)	177, 288, 401, 558, 824, 897
BfrI	CTTAAG	2 cut(s)	191, 340
BfuI	GTATCC	2 cut(s)	896, 1011
BisI	GCNGC	8 cut(s)	30, 43, 446, 458, 461, 482, 485, 562
BlnI	CCTAGG	1 cut(s)	896
BlsI	GCNGC	8 cut(s)	31, 44, 447, 459, 462, 483, 486, 563
Bme1390I	CCNGG	2 cut(s)	940, 1015
Bme18I	GGWCC	1 cut(s)	588
BmgT120I	GGNCC	1 cut(s)	588
BmiI	GGNNCC	2 cut(s)	663, 804
BmrFI	CCNGG	2 cut(s)	940, 1015
BmrI	ACTGGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	947
BmtI	GCTAGC	1 cut(s)	827
BmuI	ACTGGG	1 cut(s)	123
BpmI	CTGGAG	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	625
BsaJI	CCNNGG	2 cut(s)	896, 1013
BsaWI	WCCGGW	1 cut(s)	516
BsaXI	ACNNNNNCTCC	6 cut(s)	245, 275, 514, 544, 626, 656
Bsc4I	CCNNNNNNNGG	2 cut(s)	361, 881
Bse1I	ACTGG	2 cut(s)	118, 166
BseBI	CCWGG	2 cut(s)	940, 1015
BseDI	CCNNGG	2 cut(s)	896, 1013
BseGI	GGATG	1 cut(s)	578
BseLI	CCNNNNNNNGG	2 cut(s)	361, 881
BseMII	CTCAG	2 cut(s)	83, 288
BseNI	ACTGG	2 cut(s)	118, 166
BseRI	GAGGAG	2 cut(s)	261, 535
BseXI	GCAGC	8 cut(s)	16, 29, 457, 469, 472, 493, 496, 548
BsgI	GTGCAG	1 cut(s)	547
Bsh1236I	CGCG	1 cut(s)	710
BshFI	GGCC	1 cut(s)	867
BshNI	GGYRCC	1 cut(s)	802
BsiHKAI	GWGCWC	1 cut(s)	374
BsiSI	CCGG	1 cut(s)	517
BslI	CCNNNNNNNGG	2 cut(s)	361, 881
BsmAI	GTCTC	1 cut(s)	72
BsnI	GGCC	1 cut(s)	867
Bsp1286I	GDGCHC	2 cut(s)	374, 664
Bsp1407I	TGTACA	1 cut(s)	245
Bsp143I	GATC	3 cut(s)	79, 676, 791
BspACI	CCGC	3 cut(s)	503, 708, 827
BspANI	GGCC	1 cut(s)	867
BspCNI	CTCAG	2 cut(s)	82, 289
BspFNI	CGCG	1 cut(s)	710
BspLI	GGNNCC	2 cut(s)	663, 804
BspOI	GCTAGC	1 cut(s)	827
BspT107I	GGYRCC	1 cut(s)	802
BspTI	CTTAAG	2 cut(s)	191, 340
BsrGI	TGTACA	1 cut(s)	245
BsrI	ACTGG	2 cut(s)	118, 166
BssECI	CCNNGG	2 cut(s)	896, 1013
BssMI	GATC	3 cut(s)	79, 676, 791
BssT1I	CCWWGG	1 cut(s)	896
Bst2UI	CCWGG	2 cut(s)	940, 1015
Bst4CI	ACNGT	1 cut(s)	638
Bst6I	CTCTTC	3 cut(s)	156, 676, 764
BstAFI	CTTAAG	2 cut(s)	191, 340
BstAUI	TGTACA	1 cut(s)	245
BstC8I	GCNNGC	3 cut(s)	40, 807, 825
BstDEI	CTNAG	3 cut(s)	69, 229, 297
BstF5I	GGATG	1 cut(s)	578
BstFNI	CGCG	1 cut(s)	710
BstHHI	GCGC	1 cut(s)	427
BstKTI	GATC	3 cut(s)	82, 679, 794
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	3 cut(s)	79, 676, 791
BstMWI	GCNNNNNNNGC	9 cut(s)	26, 35, 196, 410, 454, 466, 531, 561, 927
BstNI	CCWGG	2 cut(s)	940, 1015
BstNSI	RCATGY	1 cut(s)	950
BstSCI	CCNGG	2 cut(s)	938, 1013
BstUI	CGCG	1 cut(s)	710
BstV1I	GCAGC	8 cut(s)	16, 29, 457, 469, 472, 493, 496, 548
BstXI	CCANNNNNNTGG	1 cut(s)	656
BsuI	GTATCC	2 cut(s)	896, 1011
BsuRI	GGCC	1 cut(s)	867
BtsCI	GGATG	1 cut(s)	578
BtsI	GCAGTG	3 cut(s)	733, 751, 757
BtsIMutI	CAGTG	3 cut(s)	733, 751, 757
Cac8I	GCNNGC	3 cut(s)	40, 807, 825
CfoI	GCGC	1 cut(s)	427
Cfr13I	GGNCC	1 cut(s)	588
Csp6I	GTAC	3 cut(s)	246, 514, 862
CviAII	CATG	5 cut(s)	173, 852, 922, 947, 1041
CviQI	GTAC	3 cut(s)	246, 514, 862
DdeI	CTNAG	3 cut(s)	69, 229, 297
DpnI	GATC	3 cut(s)	81, 678, 793
DpnII	GATC	3 cut(s)	79, 676, 791
EaeI	YGGCCR	1 cut(s)	865
Eam1104I	CTCTTC	3 cut(s)	156, 676, 764
EarI	CTCTTC	3 cut(s)	156, 676, 764
Eco130I	CCWWGG	1 cut(s)	896
Eco24I	GRGCYC	1 cut(s)	664
Eco32I	GATATC	1 cut(s)	832
Eco47I	GGWCC	1 cut(s)	588
Eco57I	CTGAAG	4 cut(s)	266, 425, 461, 657
EcoO109I	RGGNCCY	1 cut(s)	588
EcoRI	GAATTC	2 cut(s)	334, 682
EcoRII	CCWGG	2 cut(s)	938, 1013
EcoRV	GATATC	1 cut(s)	832
EcoT14I	CCWWGG	1 cut(s)	896
EcoT38I	GRGCYC	1 cut(s)	664
ErhI	CCWWGG	1 cut(s)	896
FaeI	CATG	5 cut(s)	176, 855, 925, 950, 1044
FatI	CATG	5 cut(s)	172, 851, 921, 946, 1040
Fnu4HI	GCNGC	8 cut(s)	30, 43, 446, 458, 461, 482, 485, 562
FokI	GGATG	1 cut(s)	565
FriOI	GRGCYC	1 cut(s)	664
Fsp4HI	GCNGC	8 cut(s)	30, 43, 446, 458, 461, 482, 485, 562
FspBI	CTAG	6 cut(s)	177, 288, 401, 558, 824, 897
GlaI	GCGC	1 cut(s)	426
GluI	GCNGC	8 cut(s)	30, 43, 446, 458, 461, 482, 485, 562
GsuI	CTGGAG	1 cut(s)	405
HaeIII	GGCC	1 cut(s)	867
HapII	CCGG	1 cut(s)	517
HhaI	GCGC	1 cut(s)	427
Hin1II	CATG	5 cut(s)	176, 855, 925, 950, 1044
Hin6I	GCGC	1 cut(s)	425
HinP1I	GCGC	1 cut(s)	425
HindIII	AAGCTT	2 cut(s)	188, 197
HinfI	GANTC	2 cut(s)	58, 301
HpaII	CCGG	1 cut(s)	517
HphI	GGTGA	3 cut(s)	796, 879, 884
Hpy166II	GTNNAC	1 cut(s)	887
Hpy188I	TCNGA	2 cut(s)	676, 681
Hpy188III	TCNNGA	5 cut(s)	136, 215, 288, 311, 839
Hpy8I	GTNNAC	1 cut(s)	887
HpyAV	CCTTC	6 cut(s)	112, 449, 601, 655, 981, 989
HpyCH4III	ACNGT	1 cut(s)	638
HpyCH4V	TGCA	4 cut(s)	38, 564, 731, 809
HpyF10VI	GCNNNNNNNGC	9 cut(s)	26, 35, 196, 410, 454, 466, 531, 561, 927
HpyF3I	CTNAG	3 cut(s)	69, 229, 297
Hsp92II	CATG	5 cut(s)	176, 855, 925, 950, 1044
HspAI	GCGC	1 cut(s)	425
Kzo9I	GATC	3 cut(s)	79, 676, 791
LmnI	GCTCC	2 cut(s)	522, 667
Lsp1109I	GCAGC	8 cut(s)	16, 29, 457, 469, 472, 493, 496, 548
LweI	GCATC	1 cut(s)	947
MaeI	CTAG	6 cut(s)	177, 288, 401, 558, 824, 897
MaeIII	GTNAC	4 cut(s)	638, 755, 815, 985
MalI	GATC	3 cut(s)	81, 678, 793
MboI	GATC	3 cut(s)	79, 676, 791
MboII	GAAGA	6 cut(s)	26, 143, 272, 663, 781, 977
MhlI	GDGCHC	2 cut(s)	374, 664
MluCI	AATT	8 cut(s)	97, 241, 334, 365, 393, 682, 795, 810
MlyI	GAGTC	1 cut(s)	67
MseI	TTAA	3 cut(s)	192, 341, 798
MspCI	CTTAAG	2 cut(s)	191, 340
MspI	CCGG	1 cut(s)	517
MspR9I	CCNGG	2 cut(s)	940, 1015
MvaI	CCWGG	2 cut(s)	940, 1015
MvnI	CGCG	1 cut(s)	710
MwoI	GCNNNNNNNGC	9 cut(s)	26, 35, 196, 410, 454, 466, 531, 561, 927
NdeII	GATC	3 cut(s)	79, 676, 791
NheI	GCTAGC	1 cut(s)	823
NlaIII	CATG	5 cut(s)	176, 855, 925, 950, 1044
NlaIV	GGNNCC	2 cut(s)	663, 804
NmuCI	GTSAC	2 cut(s)	755, 985
NspI	RCATGY	1 cut(s)	950
PfeI	GAWTC	1 cut(s)	301
PkrI	GCNGC	8 cut(s)	31, 44, 447, 459, 462, 483, 486, 563
PleI	GAGTC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	66
PpuMI	RGGWCCY	1 cut(s)	588
Psp5II	RGGWCCY	1 cut(s)	588
Psp6I	CCWGG	2 cut(s)	938, 1013
PspGI	CCWGG	2 cut(s)	938, 1013
PspN4I	GGNNCC	2 cut(s)	663, 804
PspPI	GGNCC	1 cut(s)	588
PspPPI	RGGWCCY	1 cut(s)	588
RsaI	GTAC	3 cut(s)	247, 515, 863
RsaNI	GTAC	3 cut(s)	246, 514, 862
SaqAI	TTAA	3 cut(s)	192, 341, 798
SatI	GCNGC	8 cut(s)	30, 43, 446, 458, 461, 482, 485, 562
Sau3AI	GATC	3 cut(s)	79, 676, 791
Sau96I	GGNCC	1 cut(s)	588
SchI	GAGTC	1 cut(s)	67
ScrFI	CCNGG	2 cut(s)	940, 1015
SduI	GDGCHC	2 cut(s)	374, 664
SfaNI	GCATC	1 cut(s)	947
SinI	GGWCC	1 cut(s)	588
SmlI	CTYRAG	3 cut(s)	191, 340, 604
SmoI	CTYRAG	3 cut(s)	191, 340, 604
Sse9I	AATT	8 cut(s)	97, 241, 334, 365, 393, 682, 795, 810
SsiI	CCGC	3 cut(s)	503, 708, 827
SspMI	CTAG	6 cut(s)	177, 288, 401, 558, 824, 897
StyD4I	CCNGG	2 cut(s)	938, 1013
StyI	CCWWGG	1 cut(s)	896
TaaI	ACNGT	1 cut(s)	638
TaqI	TCGA	2 cut(s)	82, 549
TasI	AATT	8 cut(s)	97, 241, 334, 365, 393, 682, 795, 810
TatI	WGTACW	1 cut(s)	245
TfiI	GAWTC	1 cut(s)	301
Tru1I	TTAA	3 cut(s)	192, 341, 798
Tru9I	TTAA	3 cut(s)	192, 341, 798
TscAI	CASTG	3 cut(s)	733, 751, 764
TseFI	GTSAC	2 cut(s)	755, 985
TseI	GCWGC	8 cut(s)	29, 42, 445, 457, 460, 481, 484, 561
Tsp45I	GTSAC	2 cut(s)	755, 985
TspDTI	ATGAA	4 cut(s)	506, 583, 840, 1008
TspRI	CASTG	3 cut(s)	733, 751, 764
Vha464I	CTTAAG	2 cut(s)	191, 340
VpaK11BI	GGWCC	1 cut(s)	588
XapI	RAATTY	3 cut(s)	97, 334, 682
XbaI	TCTAGA	1 cut(s)	287
XceI	RCATGY	1 cut(s)	950
XcmI	CCANNNNNNNNNTGG	1 cut(s)	946
XmaJI	CCTAGG	1 cut(s)	896
XspI	CTAG	6 cut(s)	177, 288, 401, 558, 824, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.