Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001527.1

Orthogroup ID

OG0010452

Physical Location & Seq

Genomic Coordinates Reverse (-)

93361 .. 96095

Gene Structure 2735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001527.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

atggtgggtcctgcccttcaaatgtgtgacacagacggcaggtttgacagcaccaactccaacaaagacccagttgttgattttgatctcctggcctcaagtttgattccaaaatccatggtttgctgggagaaatgggattctggctatctgggtggtagaggttttgatatggaggaagttgaagaagctaacaaagctgctgttgcaagctgccatagagttttgaatctgttgtctcagccacaagatcaagttcagtttaggaatttaaaggcggaaactggggaggctgtgtttaggttcaagaaagttgcttctcttctcaatactggtttgggtcatgctagagttagaaagctcaagaaacttcaaatcccttttcctgaaagtgtcctcttagataatcctaattgtacaacagaccatcactctaaaaatcctcattttcttcaatctagatttgctgagaacccaactcaagatttgagtttaaatgttagaaattccttaagtttgggaaacccctctttggaattgagcactaatgggaaaaccccaattcaactacaacaagcacttccagcgcactatcacttccttcagcagcaacagcagcatcaacaacaacagcagcagcagaggctattgcttcagcagcagcatatgaaacaacaagcggaaatgatgtaccggaggagcaatagtggcataaacctcaactttgatagctctagctgcacacccacaatgtcatctacaaggtccttcatttcttccttgagcatagatggaagcgtggctaacttggagggtaactccttccatttgattggagctcctatctcttcttcggatcaaaattcacaacataagaggaagtgttccgcgaggggggatgacggcagtgcaaaatgcggtagcagtggtaggtgtcactgctcaaagaagaggaaacatagggtgaaaagatcaattaaggtgcctgccattagtaacaaactagcagatatccctcctgatgattattcatggaggaagtatggccagaagccaatcaagggatctcctcaccctaggggatactataaatgtagtagcatgagaggttgtccagccaggaagcatgtggagagatgcttggaagaaccttccatgcttatcgtcacctatgaaggcgaacataaccacccaaggataccatcacaatccacaacgacgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

407

Amino Acids

45.58

Weight (kDa)

9.31

Isoelectric Point (pI)

54.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30590
fragaria_vesca	FvH4_2g22300 FvH4_2g22300 FvH4_2g22300 FvH4_2g22300
malus_domestica	MD05G1204400.v1.1 MD10G1191400.v1.1
prunus_persica	Prupe.8G230700_v2.0.a1
pyrus_communis	pycom05g19070 pycom10g16500
rosa_chinensis	RchiOBHm_Chr6g0289301
rosa_laevigata	RLG00000012315
rosa_multiflora	Rmu_sc0001527.1_g000020
rosa_roxburghii	Rroxscaffold_7G00179360
rosa_rugosa	Rorug06G0202500 Rorug06G0202600
rosa_samantha	Rh6AG313400 Rh6BG320900 Rh6CG327100 Rh6DG312800
rosa_wichuraiana	Rw6G027090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	30
AccB1I	GGYRCC	1 cut(s)	982
AccII	CGCG	1 cut(s)	890
AciI	CCGC	4 cut(s)	278, 680, 888, 918
AclWI	GGATC	2 cut(s)	864, 1072
AcoI	YGGCCR	1 cut(s)	1045
AcsI	RAATTY	3 cut(s)	268, 505, 862
AcuI	CTGAAG	2 cut(s)	587, 638
AfaI	GTAC	2 cut(s)	418, 692
AfiI	CCNNNNNNNGG	3 cut(s)	532, 894, 1061
AflII	CTTAAG	1 cut(s)	511
AgsI	TTSAA	7 cut(s)	20, 185, 229, 307, 374, 455, 566
AjnI	CCWGG	2 cut(s)	90, 1118
AluBI	AGCT	7 cut(s)	191, 200, 213, 361, 732, 738, 839
AluI	AGCT	7 cut(s)	191, 200, 213, 361, 732, 738, 839
Alw21I	GWGCWC	2 cut(s)	545, 841
Alw26I	GTCTC	1 cut(s)	243
AlwI	GGATC	2 cut(s)	864, 1072
AoxI	GGCC	2 cut(s)	93, 1045
ApeKI	GCWGC	9 cut(s)	200, 213, 607, 616, 634, 637, 658, 661, 738
ApoI	RAATTY	3 cut(s)	268, 505, 862
ArsI	GACNNNNNNTTYG	2 cut(s)	26, 58
AspA2I	CCTAGG	1 cut(s)	1076
AspLEI	GCGC	1 cut(s)	589
AspS9I	GGNCC	2 cut(s)	8, 765
AsuHPI	GGTGA	3 cut(s)	976, 1064, 1159
AvaII	GGWCC	2 cut(s)	8, 765
AvrII	CCTAGG	1 cut(s)	1076
BalI	TGGCCA	1 cut(s)	1047
BanI	GGYRCC	1 cut(s)	982
BanII	GRGCYC	1 cut(s)	841
Bbv12I	GWGCWC	2 cut(s)	545, 841
BbvI	GCAGC	9 cut(s)	187, 200, 619, 628, 646, 649, 670, 673, 725
BccI	CCATC	3 cut(s)	435, 785, 1210
BceAI	ACGGC	2 cut(s)	52, 919
BciT130I	CCWGG	2 cut(s)	92, 1120
BciVI	GTATCC	2 cut(s)	1076, 1191
BcoDI	GTCTC	1 cut(s)	243
BfaI	CTAG	5 cut(s)	348, 459, 735, 1004, 1077
BfrI	CTTAAG	1 cut(s)	511
BfuAI	ACCTGC	1 cut(s)	30
BfuI	GTATCC	2 cut(s)	1076, 1191
BisI	GCNGC	9 cut(s)	201, 214, 608, 617, 635, 638, 659, 662, 739
BlnI	CCTAGG	1 cut(s)	1076
BlsI	GCNGC	9 cut(s)	202, 215, 609, 618, 636, 639, 660, 663, 740
Bme1390I	CCNGG	2 cut(s)	92, 1120
Bme18I	GGWCC	2 cut(s)	8, 765
BmgT120I	GGNCC	2 cut(s)	8, 765
BmiI	GGNNCC	2 cut(s)	9, 984
BmrFI	CCNGG	2 cut(s)	92, 1120
BmrI	ACTGGG	2 cut(s)	65, 294
BmsI	GCATC	2 cut(s)	628, 1127
BmuI	ACTGGG	2 cut(s)	65, 294
BplI	GAGNNNNNCTC	2 cut(s)	803, 835
BpuEI	CTTGAG	4 cut(s)	82, 347, 465, 802
BsaBI	GATNNNNATC	1 cut(s)	84
BsaJI	CCNNGG	3 cut(s)	117, 1076, 1193
BsaWI	WCCGGW	1 cut(s)	693
BsaXI	ACNNNNNCTCC	4 cut(s)	281, 311, 691, 721
Bsc4I	CCNNNNNNNGG	3 cut(s)	532, 894, 1061
Bse1I	ACTGG	3 cut(s)	71, 289, 337
Bse8I	GATNNNNATC	1 cut(s)	84
BseBI	CCWGG	2 cut(s)	92, 1120
BseDI	CCNNGG	3 cut(s)	117, 1076, 1193
BseGI	GGATG	1 cut(s)	904
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	3 cut(s)	532, 894, 1061
BseMII	CTCAG	2 cut(s)	254, 459
BseNI	ACTGG	3 cut(s)	71, 289, 337
BseRI	GAGGAG	2 cut(s)	712, 1059
BseXI	GCAGC	9 cut(s)	187, 200, 619, 628, 646, 649, 670, 673, 725
BseYI	CCCAGC	1 cut(s)	126
BsgI	GTGCAG	1 cut(s)	724
Bsh1236I	CGCG	1 cut(s)	890
BshFI	GGCC	2 cut(s)	95, 1047
BshNI	GGYRCC	1 cut(s)	982
BsiHKAI	GWGCWC	2 cut(s)	545, 841
BsiSI	CCGG	1 cut(s)	694
BslI	CCNNNNNNNGG	3 cut(s)	532, 894, 1061
BsmAI	GTCTC	1 cut(s)	243
BsnI	GGCC	2 cut(s)	95, 1047
Bsp1286I	GDGCHC	2 cut(s)	545, 841
Bsp1407I	TGTACA	1 cut(s)	416
Bsp143I	GATC	5 cut(s)	85, 250, 856, 971, 1064
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	4 cut(s)	278, 680, 888, 918
BspANI	GGCC	2 cut(s)	95, 1047
BspCNI	CTCAG	2 cut(s)	253, 460
BspFNI	CGCG	1 cut(s)	890
BspLI	GGNNCC	2 cut(s)	9, 984
BspMI	ACCTGC	1 cut(s)	30
BspPI	GGATC	2 cut(s)	864, 1072
BspT107I	GGYRCC	1 cut(s)	982
BspTI	CTTAAG	1 cut(s)	511
BsrGI	TGTACA	1 cut(s)	416
BsrI	ACTGG	3 cut(s)	71, 289, 337
BssECI	CCNNGG	3 cut(s)	117, 1076, 1193
BssMI	GATC	5 cut(s)	85, 250, 856, 971, 1064
BssT1I	CCWWGG	3 cut(s)	117, 1076, 1193
Bst2UI	CCWGG	2 cut(s)	92, 1120
Bst6I	CTCTTC	3 cut(s)	327, 853, 944
BstAFI	CTTAAG	1 cut(s)	511
BstAUI	TGTACA	1 cut(s)	416
BstC8I	GCNNGC	2 cut(s)	211, 987
BstDEI	CTNAG	3 cut(s)	240, 400, 468
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	904
BstFNI	CGCG	1 cut(s)	890
BstHHI	GCGC	1 cut(s)	589
BstKTI	GATC	5 cut(s)	88, 253, 859, 974, 1067
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	5 cut(s)	85, 250, 856, 971, 1064
BstMWI	GCNNNNNNNGC	9 cut(s)	197, 206, 584, 613, 616, 643, 658, 708, 738
BstNI	CCWGG	2 cut(s)	92, 1120
BstNSI	RCATGY	1 cut(s)	1130
BstSCI	CCNGG	2 cut(s)	90, 1118
BstUI	CGCG	1 cut(s)	890
BstV1I	GCAGC	9 cut(s)	187, 200, 619, 628, 646, 649, 670, 673, 725
BstX2I	RGATCY	1 cut(s)	1064
BstXI	CCANNNNNNTGG	1 cut(s)	833
BstYI	RGATCY	1 cut(s)	1064
BsuI	GTATCC	2 cut(s)	1076, 1191
BsuRI	GGCC	2 cut(s)	95, 1047
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	904
BtsI	GCAGTG	3 cut(s)	913, 931, 937
BtsIMutI	CAGTG	3 cut(s)	913, 931, 937
BveI	ACCTGC	1 cut(s)	30
Cac8I	GCNNGC	2 cut(s)	211, 987
CfoI	GCGC	1 cut(s)	589
Cfr13I	GGNCC	2 cut(s)	8, 765
Csp6I	GTAC	2 cut(s)	417, 691
CviAII	CATG	6 cut(s)	118, 344, 1032, 1102, 1127, 1156
CviQI	GTAC	2 cut(s)	417, 691
DdeI	CTNAG	3 cut(s)	240, 400, 468
DpnI	GATC	5 cut(s)	87, 252, 858, 973, 1066
DpnII	GATC	5 cut(s)	85, 250, 856, 971, 1064
DraI	TTTAAA	2 cut(s)	273, 495
EaeI	YGGCCR	1 cut(s)	1045
Eam1104I	CTCTTC	3 cut(s)	327, 853, 944
EarI	CTCTTC	3 cut(s)	327, 853, 944
EciI	GGCGGA	1 cut(s)	293
Ecl136II	GAGCTC	1 cut(s)	839
Eco130I	CCWWGG	3 cut(s)	117, 1076, 1193
Eco24I	GRGCYC	1 cut(s)	841
Eco32I	GATATC	1 cut(s)	1012
Eco47I	GGWCC	2 cut(s)	8, 765
Eco53kI	GAGCTC	1 cut(s)	839
Eco57I	CTGAAG	2 cut(s)	587, 638
EcoICRI	GAGCTC	1 cut(s)	839
EcoO109I	RGGNCCY	2 cut(s)	8, 765
EcoRII	CCWGG	2 cut(s)	90, 1118
EcoRV	GATATC	1 cut(s)	1012
EcoT14I	CCWWGG	3 cut(s)	117, 1076, 1193
EcoT38I	GRGCYC	1 cut(s)	841
ErhI	CCWWGG	3 cut(s)	117, 1076, 1193
FaeI	CATG	6 cut(s)	121, 347, 1035, 1105, 1130, 1159
FatI	CATG	6 cut(s)	117, 343, 1031, 1101, 1126, 1155
FauNDI	CATATG	1 cut(s)	666
Fnu4HI	GCNGC	9 cut(s)	201, 214, 608, 617, 635, 638, 659, 662, 739
FokI	GGATG	1 cut(s)	911
FriOI	GRGCYC	1 cut(s)	841
Fsp4HI	GCNGC	9 cut(s)	201, 214, 608, 617, 635, 638, 659, 662, 739
FspBI	CTAG	5 cut(s)	348, 459, 735, 1004, 1077
GlaI	GCGC	1 cut(s)	588
GluI	GCNGC	9 cut(s)	201, 214, 608, 617, 635, 638, 659, 662, 739
GsaI	CCCAGC	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	95, 1047
HapII	CCGG	1 cut(s)	694
HhaI	GCGC	1 cut(s)	589
Hin1II	CATG	6 cut(s)	121, 347, 1035, 1105, 1130, 1159
Hin6I	GCGC	1 cut(s)	587
HinP1I	GCGC	1 cut(s)	587
HinfI	GANTC	3 cut(s)	106, 140, 229
HpaII	CCGG	1 cut(s)	694
HphI	GGTGA	3 cut(s)	976, 1064, 1159
Hpy188I	TCNGA	1 cut(s)	856
Hpy188III	TCNNGA	6 cut(s)	307, 364, 386, 459, 482, 1019
Hpy99I	CGWCG	1 cut(s)	1222
HpyAV	CCTTC	6 cut(s)	26, 611, 778, 832, 1161, 1169
HpyCH4IV	ACGT	1 cut(s)	1220
HpyCH4V	TGCA	3 cut(s)	209, 741, 911
HpyF10VI	GCNNNNNNNGC	9 cut(s)	197, 206, 584, 613, 616, 643, 658, 708, 738
HpyF3I	CTNAG	3 cut(s)	240, 400, 468
HpySE526I	ACGT	1 cut(s)	1220
Hsp92II	CATG	6 cut(s)	121, 347, 1035, 1105, 1130, 1159
HspAI	GCGC	1 cut(s)	587
Kzo9I	GATC	5 cut(s)	85, 250, 856, 971, 1064
LmnI	GCTCC	3 cut(s)	699, 836, 844
Lsp1109I	GCAGC	9 cut(s)	187, 200, 619, 628, 646, 649, 670, 673, 725
LweI	GCATC	2 cut(s)	628, 1127
MaeI	CTAG	5 cut(s)	348, 459, 735, 1004, 1077
MaeII	ACGT	1 cut(s)	1220
MaeIII	GTNAC	5 cut(s)	26, 815, 935, 995, 1165
MalI	GATC	5 cut(s)	87, 252, 858, 973, 1066
MboI	GATC	5 cut(s)	85, 250, 856, 971, 1064
MboII	GAAGA	8 cut(s)	197, 314, 443, 768, 840, 843, 961, 1157
MflI	RGATCY	1 cut(s)	1064
MhlI	GDGCHC	2 cut(s)	545, 841
MlsI	TGGCCA	1 cut(s)	1047
MluCI	AATT	7 cut(s)	268, 412, 505, 536, 561, 862, 975
MluNI	TGGCCA	1 cut(s)	1047
MmeI	TCCRAC	1 cut(s)	84
Mox20I	TGGCCA	1 cut(s)	1047
MscI	TGGCCA	1 cut(s)	1047
MseI	TTAA	4 cut(s)	272, 494, 512, 978
Msp20I	TGGCCA	1 cut(s)	1047
MspCI	CTTAAG	1 cut(s)	511
MspI	CCGG	1 cut(s)	694
MspR9I	CCNGG	2 cut(s)	92, 1120
MvaI	CCWGG	2 cut(s)	92, 1120
MvnI	CGCG	1 cut(s)	890
MwoI	GCNNNNNNNGC	9 cut(s)	197, 206, 584, 613, 616, 643, 658, 708, 738
NcoI	CCATGG	1 cut(s)	117
NdeI	CATATG	1 cut(s)	666
NdeII	GATC	5 cut(s)	85, 250, 856, 971, 1064
NlaIII	CATG	6 cut(s)	121, 347, 1035, 1105, 1130, 1159
NlaIV	GGNNCC	2 cut(s)	9, 984
NmuCI	GTSAC	3 cut(s)	26, 935, 1165
NspI	RCATGY	1 cut(s)	1130
PfeI	GAWTC	3 cut(s)	106, 140, 229
PkrI	GCNGC	9 cut(s)	202, 215, 609, 618, 636, 639, 660, 663, 740
PpuMI	RGGWCCY	2 cut(s)	8, 765
Psp124BI	GAGCTC	1 cut(s)	841
Psp5II	RGGWCCY	2 cut(s)	8, 765
Psp6I	CCWGG	2 cut(s)	90, 1118
PspFI	CCCAGC	1 cut(s)	126
PspGI	CCWGG	2 cut(s)	90, 1118
PspN4I	GGNNCC	2 cut(s)	9, 984
PspPI	GGNCC	2 cut(s)	8, 765
PspPPI	RGGWCCY	2 cut(s)	8, 765
PsuI	RGATCY	1 cut(s)	1064
RsaI	GTAC	2 cut(s)	418, 692
RsaNI	GTAC	2 cut(s)	417, 691
SacI	GAGCTC	1 cut(s)	841
SaqAI	TTAA	4 cut(s)	272, 494, 512, 978
SatI	GCNGC	9 cut(s)	201, 214, 608, 617, 635, 638, 659, 662, 739
Sau3AI	GATC	5 cut(s)	85, 250, 856, 971, 1064
Sau96I	GGNCC	2 cut(s)	8, 765
ScrFI	CCNGG	2 cut(s)	92, 1120
SduI	GDGCHC	2 cut(s)	545, 841
SfaNI	GCATC	2 cut(s)	628, 1127
SinI	GGWCC	2 cut(s)	8, 765
SmlI	CTYRAG	5 cut(s)	97, 362, 480, 511, 781
SmoI	CTYRAG	5 cut(s)	97, 362, 480, 511, 781
Sse9I	AATT	7 cut(s)	268, 412, 505, 536, 561, 862, 975
SsiI	CCGC	4 cut(s)	278, 680, 888, 918
SspMI	CTAG	5 cut(s)	348, 459, 735, 1004, 1077
SstI	GAGCTC	1 cut(s)	841
StyD4I	CCNGG	2 cut(s)	90, 1118
StyI	CCWWGG	3 cut(s)	117, 1076, 1193
TaiI	ACGT	1 cut(s)	1223
TasI	AATT	7 cut(s)	268, 412, 505, 536, 561, 862, 975
TatI	WGTACW	1 cut(s)	416
TfiI	GAWTC	3 cut(s)	106, 140, 229
Tru1I	TTAA	4 cut(s)	272, 494, 512, 978
Tru9I	TTAA	4 cut(s)	272, 494, 512, 978
TscAI	CASTG	3 cut(s)	913, 931, 944
TseFI	GTSAC	3 cut(s)	26, 935, 1165
TseI	GCWGC	9 cut(s)	200, 213, 607, 616, 634, 637, 658, 661, 738
Tsp45I	GTSAC	3 cut(s)	26, 935, 1165
TspDTI	ATGAA	4 cut(s)	683, 760, 1020, 1188
TspRI	CASTG	3 cut(s)	913, 931, 944
Vha464I	CTTAAG	1 cut(s)	511
VpaK11BI	GGWCC	2 cut(s)	8, 765
XapI	RAATTY	3 cut(s)	268, 505, 862
XbaI	TCTAGA	1 cut(s)	458
XceI	RCATGY	1 cut(s)	1130
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1126
XmaJI	CCTAGG	1 cut(s)	1076
XspI	CTAG	5 cut(s)	348, 459, 735, 1004, 1077

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.