Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0010452

Physical Location & Seq

Genomic Coordinates Reverse (-)

51397779 .. 51401970

Gene Structure 4192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG312800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGAGGAAGTTGAAGAAGCTAACAAAGCTGCTGTTGCAAGCTGCCATAGAGTTTTGAATCTGTTGTCTCAGCCACAAGATCAAGTTCAGTTTAGGAATTTAAAGGCGGAAACTGGGGAGGCTGTGTTTAGGTTCAAGAAAGTTGCTTCTCTTCTCAATACTGGTTTGGGTCATGCTAGAGTTAGAAAGCTCAAGAAACTTCAAATCCCTTTTCCTGAAAGTGTCCTCTTAGATAATCCTAATTGTACAACAGACCATCACTCTAAAAATCCTCATTTTCTTCAATCTAGATTTGCTGAGAACCCAGCTCAAGATTTGAGTTTAAATGTTAGAAATTCCTTAAGTTTGGGAAACCCCTCTTTGGAATTGAGCACTAATGGGAAAACCCCAATTCAACTACAACAAGCACTCCCAGCGCACTATCACTTCCTTCAGCAGCAACAGCAGCATCAACAACAACAGCAGCAGCAGCAGAGGCTATTGCTTCAGCAGCAGCATATGAAACAACAAGCGGAAATGATGTACCGGAGGAGCAATAGTGGCATAAACCTCAACTTTGATAGCTCTAGCTGCACACCCACAATGTCATCTACAAGGTCCTTCATTTCTTCCTTGAGCATAGATGGAAGCGTGGCTAACTTGGAGGGTAACTCATTCCATTTGATTGGAGCTCCTATCTCTTCTTCGGATCAAAATTCACAACATAAGAGAAAGTGTTCCGCGAGGGGGGATGACGGCAGTGCAAAATGCGGTAGCAGTGGTAGGTGTCACTGCTCAAAGAAGAGGTTGGATTTGCTTCCCTTTTCTTCTACCTGGTTCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

274

Amino Acids

30.63

Weight (kDa)

9.35

Isoelectric Point (pI)

62.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30590
fragaria_vesca	FvH4_2g22300 FvH4_2g22300 FvH4_2g22300 FvH4_2g22300
malus_domestica	MD05G1204400.v1.1 MD10G1191400.v1.1
prunus_persica	Prupe.8G230700_v2.0.a1
pyrus_communis	pycom05g19070 pycom10g16500
rosa_chinensis	RchiOBHm_Chr6g0289301
rosa_laevigata	RLG00000012315
rosa_multiflora	Rmu_sc0001527.1_g000020
rosa_roxburghii	Rroxscaffold_7G00179360
rosa_rugosa	Rorug06G0202500 Rorug06G0202600
rosa_samantha	Rh6AG313400 Rh6BG320900 Rh6CG327100 Rh6DG312800
rosa_wichuraiana	Rw6G027090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	722
AciI	CCGC	4 cut(s)	107, 512, 720, 750
AclWI	GGATC	1 cut(s)	696
AcsI	RAATTY	3 cut(s)	97, 334, 694
AcuI	CTGAAG	2 cut(s)	416, 470
AfaI	GTAC	2 cut(s)	247, 524
AfiI	CCNNNNNNNGG	2 cut(s)	361, 726
AflII	CTTAAG	1 cut(s)	340
AgsI	TTSAA	6 cut(s)	14, 58, 136, 203, 284, 395
AjnI	CCWGG	1 cut(s)	812
AluBI	AGCT	8 cut(s)	20, 29, 42, 190, 308, 564, 570, 671
AluI	AGCT	8 cut(s)	20, 29, 42, 190, 308, 564, 570, 671
Alw21I	GWGCWC	2 cut(s)	374, 673
Alw26I	GTCTC	1 cut(s)	72
AlwI	GGATC	1 cut(s)	696
ApoI	RAATTY	3 cut(s)	97, 334, 694
Asp700I	GAANNNNTTC	1 cut(s)	715
AspLEI	GCGC	1 cut(s)	418
AspS9I	GGNCC	1 cut(s)	597
AvaII	GGWCC	1 cut(s)	597
BanII	GRGCYC	1 cut(s)	673
Bbv12I	GWGCWC	2 cut(s)	374, 673
BccI	CCATC	2 cut(s)	264, 617
BceAI	ACGGC	1 cut(s)	751
BciT130I	CCWGG	1 cut(s)	814
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	3 cut(s)	177, 288, 567
BfrI	CTTAAG	1 cut(s)	340
Bme1390I	CCNGG	1 cut(s)	814
Bme18I	GGWCC	1 cut(s)	597
BmgT120I	GGNCC	1 cut(s)	597
BmrFI	CCNGG	1 cut(s)	814
BmrI	ACTGGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	457
BmuI	ACTGGG	1 cut(s)	123
BplI	GAGNNNNNCTC	2 cut(s)	635, 667
BpuEI	CTTGAG	3 cut(s)	176, 294, 634
BsaWI	WCCGGW	1 cut(s)	525
BsaXI	ACNNNNNCTCC	6 cut(s)	110, 140, 393, 423, 523, 553
Bsc4I	CCNNNNNNNGG	2 cut(s)	361, 726
Bse1I	ACTGG	2 cut(s)	118, 166
BseBI	CCWGG	1 cut(s)	814
BseGI	GGATG	1 cut(s)	736
BseLI	CCNNNNNNNGG	2 cut(s)	361, 726
BseMII	CTCAG	2 cut(s)	83, 288
BseNI	ACTGG	2 cut(s)	118, 166
BseRI	GAGGAG	1 cut(s)	544
BseYI	CCCAGC	2 cut(s)	304, 412
BsgI	GTGCAG	1 cut(s)	556
Bsh1236I	CGCG	1 cut(s)	722
BsiHKAI	GWGCWC	2 cut(s)	374, 673
BsiSI	CCGG	1 cut(s)	526
BslI	CCNNNNNNNGG	2 cut(s)	361, 726
BsmAI	GTCTC	1 cut(s)	72
Bsp1286I	GDGCHC	2 cut(s)	374, 673
Bsp1407I	TGTACA	1 cut(s)	245
Bsp143I	GATC	2 cut(s)	79, 688
BspACI	CCGC	4 cut(s)	107, 512, 720, 750
BspCNI	CTCAG	2 cut(s)	82, 289
BspFNI	CGCG	1 cut(s)	722
BspPI	GGATC	1 cut(s)	696
BspTI	CTTAAG	1 cut(s)	340
BsrGI	TGTACA	1 cut(s)	245
BsrI	ACTGG	2 cut(s)	118, 166
BssMI	GATC	2 cut(s)	79, 688
Bst2UI	CCWGG	1 cut(s)	814
Bst6I	CTCTTC	3 cut(s)	156, 685, 776
BstAFI	CTTAAG	1 cut(s)	340
BstAUI	TGTACA	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	3 cut(s)	69, 229, 297
BstF5I	GGATG	1 cut(s)	736
BstFNI	CGCG	1 cut(s)	722
BstHHI	GCGC	1 cut(s)	418
BstKTI	GATC	2 cut(s)	82, 691
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	2 cut(s)	79, 688
BstNI	CCWGG	1 cut(s)	814
BstSCI	CCNGG	1 cut(s)	812
BstUI	CGCG	1 cut(s)	722
BstXI	CCANNNNNNTGG	1 cut(s)	665
BtsCI	GGATG	1 cut(s)	736
BtsI	GCAGTG	3 cut(s)	745, 763, 769
BtsIMutI	CAGTG	3 cut(s)	745, 763, 769
Cac8I	GCNNGC	1 cut(s)	40
CfoI	GCGC	1 cut(s)	418
Cfr13I	GGNCC	1 cut(s)	597
CsiI	ACCWGGT	1 cut(s)	812
Csp6I	GTAC	2 cut(s)	246, 523
CviAII	CATG	1 cut(s)	173
CviQI	GTAC	2 cut(s)	246, 523
DdeI	CTNAG	3 cut(s)	69, 229, 297
DpnI	GATC	2 cut(s)	81, 690
DpnII	GATC	2 cut(s)	79, 688
DraI	TTTAAA	2 cut(s)	102, 324
Eam1104I	CTCTTC	3 cut(s)	156, 685, 776
EarI	CTCTTC	3 cut(s)	156, 685, 776
EciI	GGCGGA	1 cut(s)	122
Ecl136II	GAGCTC	1 cut(s)	671
Eco24I	GRGCYC	1 cut(s)	673
Eco47I	GGWCC	1 cut(s)	597
Eco53kI	GAGCTC	1 cut(s)	671
Eco57I	CTGAAG	2 cut(s)	416, 470
EcoICRI	GAGCTC	1 cut(s)	671
EcoO109I	RGGNCCY	1 cut(s)	597
EcoRII	CCWGG	1 cut(s)	812
EcoT38I	GRGCYC	1 cut(s)	673
FaeI	CATG	1 cut(s)	176
FaiI	YATR	7 cut(s)	48, 174, 498, 500, 545, 620, 705
FatI	CATG	1 cut(s)	172
FauNDI	CATATG	1 cut(s)	498
FokI	GGATG	1 cut(s)	743
FriOI	GRGCYC	1 cut(s)	673
FspBI	CTAG	3 cut(s)	177, 288, 567
GlaI	GCGC	1 cut(s)	417
GsaI	CCCAGC	2 cut(s)	308, 416
HapII	CCGG	1 cut(s)	526
HhaI	GCGC	1 cut(s)	418
Hin1II	CATG	1 cut(s)	176
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HinfI	GANTC	1 cut(s)	58
HpaII	CCGG	1 cut(s)	526
Hpy188I	TCNGA	1 cut(s)	688
Hpy188III	TCNNGA	5 cut(s)	136, 193, 215, 288, 311
HpyAV	CCTTC	2 cut(s)	440, 610
HpyCH4V	TGCA	3 cut(s)	38, 573, 743
HpyF3I	CTNAG	3 cut(s)	69, 229, 297
Hsp92II	CATG	1 cut(s)	176
HspAI	GCGC	1 cut(s)	416
Kzo9I	GATC	2 cut(s)	79, 688
LmnI	GCTCC	3 cut(s)	531, 668, 676
LpnPI	CCDG	7 cut(s)	99, 147, 228, 318, 426, 539, 799
LweI	GCATC	1 cut(s)	457
MabI	ACCWGGT	1 cut(s)	812
MaeI	CTAG	3 cut(s)	177, 288, 567
MaeIII	GTNAC	2 cut(s)	647, 767
MalI	GATC	2 cut(s)	81, 690
MboI	GATC	2 cut(s)	79, 688
MboII	GAAGA	8 cut(s)	26, 143, 272, 600, 672, 675, 793, 798
MhlI	GDGCHC	2 cut(s)	374, 673
MluCI	AATT	6 cut(s)	97, 241, 334, 365, 390, 694
MmeI	TCCRAC	1 cut(s)	768
MroXI	GAANNNNTTC	1 cut(s)	715
MseI	TTAA	4 cut(s)	101, 323, 341, 823
MspCI	CTTAAG	1 cut(s)	340
MspI	CCGG	1 cut(s)	526
MspR9I	CCNGG	1 cut(s)	814
MvaI	CCWGG	1 cut(s)	814
MvnI	CGCG	1 cut(s)	722
NdeI	CATATG	1 cut(s)	498
NdeII	GATC	2 cut(s)	79, 688
NlaIII	CATG	1 cut(s)	176
NmuCI	GTSAC	1 cut(s)	767
PdmI	GAANNNNTTC	1 cut(s)	715
PfeI	GAWTC	1 cut(s)	58
PpuMI	RGGWCCY	1 cut(s)	597
Psp124BI	GAGCTC	1 cut(s)	673
Psp5II	RGGWCCY	1 cut(s)	597
Psp6I	CCWGG	1 cut(s)	812
PspFI	CCCAGC	2 cut(s)	304, 412
PspGI	CCWGG	1 cut(s)	812
PspPI	GGNCC	1 cut(s)	597
PspPPI	RGGWCCY	1 cut(s)	597
RsaI	GTAC	2 cut(s)	247, 524
RsaNI	GTAC	2 cut(s)	246, 523
SacI	GAGCTC	1 cut(s)	673
SaqAI	TTAA	4 cut(s)	101, 323, 341, 823
Sau3AI	GATC	2 cut(s)	79, 688
Sau96I	GGNCC	1 cut(s)	597
ScrFI	CCNGG	1 cut(s)	814
SduI	GDGCHC	2 cut(s)	374, 673
SexAI	ACCWGGT	1 cut(s)	812
SfaNI	GCATC	1 cut(s)	457
SinI	GGWCC	1 cut(s)	597
SmlI	CTYRAG	4 cut(s)	191, 309, 340, 613
SmoI	CTYRAG	4 cut(s)	191, 309, 340, 613
Sse9I	AATT	6 cut(s)	97, 241, 334, 365, 390, 694
SsiI	CCGC	4 cut(s)	107, 512, 720, 750
SspMI	CTAG	3 cut(s)	177, 288, 567
SstI	GAGCTC	1 cut(s)	673
StyD4I	CCNGG	1 cut(s)	812
TasI	AATT	6 cut(s)	97, 241, 334, 365, 390, 694
TatI	WGTACW	1 cut(s)	245
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	4 cut(s)	101, 323, 341, 823
Tru9I	TTAA	4 cut(s)	101, 323, 341, 823
TscAI	CASTG	3 cut(s)	745, 763, 776
TseFI	GTSAC	1 cut(s)	767
Tsp45I	GTSAC	1 cut(s)	767
TspDTI	ATGAA	3 cut(s)	515, 592, 808
TspRI	CASTG	3 cut(s)	745, 763, 776
Vha464I	CTTAAG	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	597
XapI	RAATTY	3 cut(s)	97, 334, 694
XbaI	TCTAGA	1 cut(s)	287
XmnI	GAANNNNTTC	1 cut(s)	715
XspI	CTAG	3 cut(s)	177, 288, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.