Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010452

Physical Location & Seq

Genomic Coordinates Forward (+)

32463087 .. 32464264

Gene Structure 1178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0202500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGTCTTTACATCACCCTGAACTAAAGTGGTTTCTTTGTGAGAAGTGGTTGAAAACACGCCATGGCTATAAGGCTCCTTGTGAATCAATAATTTTAAGCTCTCAATGGGGATCAATCTCGTTGTTTGTTGATCTTTCACTCATAGACGATGTATATTATGGTATTGGCATATATAAATACAGAGATGAATTAGAGAAATTGGGTGTCATCACATATTTTGAAGGAGGAGCGTTGATTGTAGCTAAAGGTCTTTCCAGTCCCATCGAAGATGAACTAATTACTGCAGATGGTATTTTATCATTGCTAGAATGCCTCAAGTGTCTGATGACAAGGTCTCCTGATGAACCTTCATTGAGTAACTTTCTCAAGAACATTGCAAAAGGCAAGTGTTTGAAGACCCAGAATGGTTACAAATTGGCAGAAGAATGTGTTCTCTTTGATCCTGCCTGGGAAGATTCTTTGGATGTTTGTTCTCTTCTTTCTGGGATTCTTTTTTCGCTGACTGAAACAACTTCAATAACAAGGATTTATAGCTTTCTCAACAAGTTCCAATGGAATCCAGAAGTTCTGGATAGCCTTAAGTCTCAGGTGTGGATACCTACCCCAAAGGGTACTGGCAAGTGGATTAATTCTCAGGATTGTGTACTTCATGATAACAAGCATGTGTTTGGATCCCGCTTGTTTTCTCTTGACGAGTTTTACAAGAAAGAGCTTCTCCCTCTTTTCTCTTCGGCCTTTGGAGTTGCTGAAAACCCTACAACCAATGATTACTTGGAGCTATGGAACAGCTGGGCTATGAGGGTTAACTATCAAGTTACTCTTCTGGAGTGTAGCTCTTTTTGGGAACATGTAGTAGACAACTGGAATCAAGAATTAGAAGTTACTCTAAAACAGCAGCTGACCAAATTACCCGCCTTAATGTCCATGTCTCGAGGAATATATCTGATAAACAGAGAGGAAGTATTCATTGCTGATGACATGCAGCTGAAAATAATTTTCACTAGCTTTGATAAGGTTCCCCCCTGTTTGTGTGGTTTCCCAAGAGTGACTGCTTGCCAATTCCTCCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

356

Amino Acids

40.77

Weight (kDa)

5.22

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30590
fragaria_vesca	FvH4_2g22300 FvH4_2g22300 FvH4_2g22300 FvH4_2g22300
malus_domestica	MD05G1204400.v1.1 MD10G1191400.v1.1
prunus_persica	Prupe.8G230700_v2.0.a1
pyrus_communis	pycom05g19070 pycom10g16500
rosa_chinensis	RchiOBHm_Chr6g0289301
rosa_laevigata	RLG00000012315
rosa_multiflora	Rmu_sc0001527.1_g000020
rosa_roxburghii	Rroxscaffold_7G00179360
rosa_rugosa	Rorug06G0202500 Rorug06G0202600
rosa_samantha	Rh6AG313400 Rh6BG320900 Rh6CG327100 Rh6DG312800
rosa_wichuraiana	Rw6G027090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	855
AciI	CCGC	2 cut(s)	676, 912
AclWI	GGATC	4 cut(s)	118, 434, 666, 679
AfaI	GTAC	2 cut(s)	613, 645
AflII	CTTAAG	1 cut(s)	578
AflIII	ACRYGT	1 cut(s)	847
AgsI	TTSAA	4 cut(s)	52, 221, 394, 516
AjnI	CCWGG	1 cut(s)	446
Alw26I	GTCTC	3 cut(s)	339, 588, 933
AlwI	GGATC	4 cut(s)	118, 434, 666, 679
AlwNI	CAGNNNCTG	1 cut(s)	898
Ama87I	CYCGRG	1 cut(s)	930
AoxI	GGCC	1 cut(s)	732
ApeKI	GCWGC	2 cut(s)	895, 982
AseI	ATTAAT	1 cut(s)	627
Asp700I	GAANNNNTTC	1 cut(s)	429
AsuHPI	GGTGA	1 cut(s)	5
AvaI	CYCGRG	1 cut(s)	930
BamHI	GGATCC	1 cut(s)	671
BbsI	GAAGAC	1 cut(s)	401
BbvI	GCAGC	2 cut(s)	907, 994
BccI	CCATC	2 cut(s)	269, 281
BciT130I	CCWGG	1 cut(s)	448
BciVI	GTATCC	1 cut(s)	588
BcoDI	GTCTC	3 cut(s)	339, 588, 933
BfaI	CTAG	2 cut(s)	305, 1002
BfmI	CTRYAG	1 cut(s)	282
BfrI	CTTAAG	1 cut(s)	578
BfuI	GTATCC	1 cut(s)	588
BisI	GCNGC	2 cut(s)	896, 983
BlsI	GCNGC	2 cut(s)	897, 984
Bme1390I	CCNGG	1 cut(s)	448
BmeT110I	CYCGRG	1 cut(s)	930
BmiI	GGNNCC	3 cut(s)	75, 673, 1017
BmrFI	CCNGG	1 cut(s)	448
BpiI	GAAGAC	1 cut(s)	401
BplI	GAGNNNNNCTC	2 cut(s)	818, 850
BpmI	CTGGAG	1 cut(s)	845
BpuEI	CTTGAG	2 cut(s)	299, 350
BsaI	GGTCTC	1 cut(s)	339
BsaJI	CCNNGG	2 cut(s)	61, 447
BsaXI	ACNNNNNCTCC	2 cut(s)	319, 349
Bse1I	ACTGG	3 cut(s)	255, 619, 866
Bse3DI	GCAATG	3 cut(s)	299, 372, 966
BseBI	CCWGG	1 cut(s)	448
BseDI	CCNNGG	2 cut(s)	61, 447
BseGI	GGATG	1 cut(s)	469
BseMI	GCAATG	3 cut(s)	299, 372, 966
BseMII	CTCAG	2 cut(s)	599, 647
BseNI	ACTGG	3 cut(s)	255, 619, 866
BseRI	GAGGAG	1 cut(s)	240
BseXI	GCAGC	2 cut(s)	907, 994
BseYI	CCCAGC	1 cut(s)	789
BshFI	GGCC	1 cut(s)	734
BsiHKCI	CYCGRG	1 cut(s)	930
BslFI	GGGAC	1 cut(s)	243
BsmAI	GTCTC	3 cut(s)	339, 588, 933
BsmFI	GGGAC	1 cut(s)	243
BsmI	GAATGC	1 cut(s)	314
BsnI	GGCC	1 cut(s)	734
Bso31I	GGTCTC	1 cut(s)	339
BsoBI	CYCGRG	1 cut(s)	930
Bsp143I	GATC	4 cut(s)	110, 130, 439, 671
Bsp19I	CCATGG	1 cut(s)	61
BspACI	CCGC	2 cut(s)	676, 912
BspANI	GGCC	1 cut(s)	734
BspCNI	CTCAG	2 cut(s)	598, 646
BspHI	TCATGA	1 cut(s)	649
BspLI	GGNNCC	3 cut(s)	75, 673, 1017
BspMAI	CTGCAG	1 cut(s)	286
BspPI	GGATC	4 cut(s)	118, 434, 666, 679
BspTI	CTTAAG	1 cut(s)	578
BspTNI	GGTCTC	1 cut(s)	339
BsrDI	GCAATG	3 cut(s)	299, 372, 966
BsrI	ACTGG	3 cut(s)	255, 619, 866
BssECI	CCNNGG	2 cut(s)	61, 447
BssMI	GATC	4 cut(s)	110, 130, 439, 671
BssT1I	CCWWGG	1 cut(s)	61
Bst2UI	CCWGG	1 cut(s)	448
Bst6I	CTCTTC	3 cut(s)	480, 733, 825
BstAFI	CTTAAG	1 cut(s)	578
BstC8I	GCNNGC	1 cut(s)	1054
BstDEI	CTNAG	2 cut(s)	585, 633
BstDSI	CCRYGG	1 cut(s)	61
BstF5I	GGATG	1 cut(s)	469
BstKTI	GATC	4 cut(s)	113, 133, 442, 674
BstMAI	GTCTC	3 cut(s)	339, 588, 933
BstMBI	GATC	4 cut(s)	110, 130, 439, 671
BstNI	CCWGG	1 cut(s)	448
BstNSI	RCATGY	3 cut(s)	665, 851, 982
BstSCI	CCNGG	1 cut(s)	446
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	2 cut(s)	907, 994
BstV2I	GAAGAC	1 cut(s)	401
BstX2I	RGATCY	1 cut(s)	671
BstYI	RGATCY	1 cut(s)	671
BsuI	GTATCC	1 cut(s)	588
BsuRI	GGCC	1 cut(s)	734
BtgI	CCRYGG	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	469
Cac8I	GCNNGC	1 cut(s)	1054
CaiI	CAGNNNCTG	1 cut(s)	898
CciI	TCATGA	1 cut(s)	649
Csp6I	GTAC	2 cut(s)	612, 644
CviAII	CATG	6 cut(s)	62, 650, 662, 848, 925, 979
CviQI	GTAC	2 cut(s)	612, 644
DdeI	CTNAG	2 cut(s)	585, 633
DpnI	GATC	4 cut(s)	112, 132, 441, 673
DpnII	GATC	4 cut(s)	110, 130, 439, 671
Eam1104I	CTCTTC	3 cut(s)	480, 733, 825
EarI	CTCTTC	3 cut(s)	480, 733, 825
Eco130I	CCWWGG	1 cut(s)	61
Eco31I	GGTCTC	1 cut(s)	339
Eco88I	CYCGRG	1 cut(s)	930
EcoRII	CCWGG	1 cut(s)	446
EcoT14I	CCWWGG	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	6 cut(s)	65, 653, 665, 851, 928, 982
FalI	AAGNNNNNCTT	2 cut(s)	804, 836
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	6 cut(s)	61, 649, 661, 847, 924, 978
FauI	CCCGC	2 cut(s)	683, 919
FblI	GTMKAC	1 cut(s)	855
Fnu4HI	GCNGC	2 cut(s)	896, 983
FokI	GGATG	1 cut(s)	476
Fsp4HI	GCNGC	2 cut(s)	896, 983
FspBI	CTAG	2 cut(s)	305, 1002
GluI	GCNGC	2 cut(s)	896, 983
GsaI	CCCAGC	1 cut(s)	793
GsuI	CTGGAG	1 cut(s)	845
HaeIII	GGCC	1 cut(s)	734
Hin1II	CATG	6 cut(s)	65, 653, 665, 851, 928, 982
HincII	GTYRAC	1 cut(s)	805
HindII	GTYRAC	1 cut(s)	805
HinfI	GANTC	5 cut(s)	83, 455, 487, 556, 865
HpaI	GTTAAC	1 cut(s)	805
HphI	GGTGA	1 cut(s)	5
Hpy166II	GTNNAC	3 cut(s)	644, 805, 856
Hpy188I	TCNGA	3 cut(s)	324, 945, 1067
Hpy8I	GTNNAC	3 cut(s)	644, 805, 856
HpyAV	CCTTC	2 cut(s)	215, 357
HpyCH4V	TGCA	3 cut(s)	284, 377, 982
HpyF3I	CTNAG	2 cut(s)	585, 633
Hsp92II	CATG	6 cut(s)	65, 653, 665, 851, 928, 982
KspAI	GTTAAC	1 cut(s)	805
Kzo9I	GATC	4 cut(s)	110, 130, 439, 671
LmnI	GCTCC	3 cut(s)	79, 227, 775
Lsp1109I	GCAGC	2 cut(s)	907, 994
MaeI	CTAG	2 cut(s)	305, 1002
MaeIII	GTNAC	5 cut(s)	356, 407, 814, 880, 1045
MalI	GATC	4 cut(s)	112, 132, 441, 673
MboI	GATC	4 cut(s)	110, 130, 439, 671
MboII	GAAGA	7 cut(s)	278, 406, 434, 464, 467, 720, 812
MflI	RGATCY	1 cut(s)	671
MnlI	CCTC	6 cut(s)	218, 323, 729, 792, 926, 949
MroXI	GAANNNNTTC	1 cut(s)	429
MseI	TTAA	5 cut(s)	95, 579, 627, 804, 917
MspA1I	CMGCKG	3 cut(s)	789, 898, 985
MspCI	CTTAAG	1 cut(s)	578
MspR9I	CCNGG	1 cut(s)	448
Mva1269I	GAATGC	1 cut(s)	314
MvaI	CCWGG	1 cut(s)	448
NcoI	CCATGG	1 cut(s)	61
NdeII	GATC	4 cut(s)	110, 130, 439, 671
NlaIII	CATG	6 cut(s)	65, 653, 665, 851, 928, 982
NlaIV	GGNNCC	3 cut(s)	75, 673, 1017
NmuCI	GTSAC	1 cut(s)	1045
NspI	RCATGY	3 cut(s)	665, 851, 982
PaeR7I	CTCGAG	1 cut(s)	930
PagI	TCATGA	1 cut(s)	649
PciI	ACATGT	1 cut(s)	847
PctI	GAATGC	1 cut(s)	314
PdmI	GAANNNNTTC	1 cut(s)	429
PfeI	GAWTC	5 cut(s)	83, 455, 487, 556, 865
PflFI	GACNNNGTC	1 cut(s)	331
PkrI	GCNGC	2 cut(s)	897, 984
PscI	ACATGT	1 cut(s)	847
PshBI	ATTAAT	1 cut(s)	627
Psp6I	CCWGG	1 cut(s)	446
PspFI	CCCAGC	1 cut(s)	789
PspGI	CCWGG	1 cut(s)	446
PspN4I	GGNNCC	3 cut(s)	75, 673, 1017
PstI	CTGCAG	1 cut(s)	286
PstNI	CAGNNNCTG	1 cut(s)	898
PsuI	RGATCY	1 cut(s)	671
PsyI	GACNNNGTC	1 cut(s)	331
PvuII	CAGCTG	3 cut(s)	789, 898, 985
RsaI	GTAC	2 cut(s)	613, 645
RsaNI	GTAC	2 cut(s)	612, 644
SaqAI	TTAA	5 cut(s)	95, 579, 627, 804, 917
SatI	GCNGC	2 cut(s)	896, 983
Sau3AI	GATC	4 cut(s)	110, 130, 439, 671
ScrFI	CCNGG	1 cut(s)	448
SfcI	CTRYAG	1 cut(s)	282
Sfr274I	CTCGAG	1 cut(s)	930
SlaI	CTCGAG	1 cut(s)	930
SmlI	CTYRAG	4 cut(s)	314, 365, 578, 930
SmoI	CTYRAG	4 cut(s)	314, 365, 578, 930
SsiI	CCGC	2 cut(s)	676, 912
SspMI	CTAG	2 cut(s)	305, 1002
StyD4I	CCNGG	1 cut(s)	446
StyI	CCWWGG	1 cut(s)	61
TaqI	TCGA	2 cut(s)	264, 931
TatI	WGTACW	1 cut(s)	643
TfiI	GAWTC	5 cut(s)	83, 455, 487, 556, 865
Tru1I	TTAA	5 cut(s)	95, 579, 627, 804, 917
Tru9I	TTAA	5 cut(s)	95, 579, 627, 804, 917
TseFI	GTSAC	1 cut(s)	1045
TseI	GCWGC	2 cut(s)	895, 982
Tsp45I	GTSAC	1 cut(s)	1045
TspDTI	ATGAA	6 cut(s)	201, 285, 339, 357, 638, 955
Tth111I	GACNNNGTC	1 cut(s)	331
Vha464I	CTTAAG	1 cut(s)	578
VspI	ATTAAT	1 cut(s)	627
XceI	RCATGY	3 cut(s)	665, 851, 982
XcmI	CCANNNNNNNNNTGG	1 cut(s)	769
XhoI	CTCGAG	1 cut(s)	930
XmiI	GTMKAC	1 cut(s)	855
XmnI	GAANNNNTTC	1 cut(s)	429
XspI	CTAG	2 cut(s)	305, 1002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.