Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012990

Physical Location & Seq

Genomic Coordinates Reverse (-)

18303007 .. 18304466

Gene Structure 1460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G49360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCACCGGTGAAGAGGAGGGTGTTCAAGACAAATAATGAAATGGCAGTGGAGCTGGCCAAATACACGGCTGATCTTTCCTCCAAATTTTGCAAAGAAAGAGGAGTTTTCACCGTTGTTCTCTCCGGCGGCGACCTCATAGCCTGGCTCTGGAAATTGTTAGAAGCTCCTTATATTGATTCAATTGAGTGGTCTAAGTGGCACATCTTTTGGGTCGACGAGAGGGTTTGTGCTTGGGATCATGCGGATAGCAACTATAAACTCGCTTACGATGGTTTTCTCTCCAAGGTTCCAGTTCCAGCTGAAAACATCTACGCTATCGATAACGGACTCGGGGCAGAAGGCAACGCCGAGCTAGCAGCTGAAAGGTACGAGGAGTGCCTCAAACAAAAAGTGAACCAAAACATAATCCGAACGTACAAATCTTCTGGTTTTCCACAGTTCGATCTTCAGCTTCTAGGTATGGGACCGGACGGTCACATGGCGTCTCTATTCCCTGGACATGCTCAGATCAATGAGAAGGTGAAATGGGTCACATCTATAACCGATTCACCTAAGCCACCGTCAAAAAGGATCACATTGACTTTACCGGTTATCAATTGTGCTTCCTATAATGTTATGGCCGTATGTGATAAAGAGCAGGCTGATTCGGTTGCGGCTGCTCTTAATCATACCAAAGACTTACCAGCTGGTAGACTAACCGCGGATGTTGAAGTGGTTTGGTTCCTTGACCAAGCTGCTGCGTCTAAACTCCCTCATGGCTGGTGCTCCATCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0006081 GO:0006082 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016787 GO:0016788 GO:0017057 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0031090 GO:0034641 GO:0042126 GO:0042128 GO:0042579 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0050896 GO:0051156 GO:0051186 GO:0051704 GO:0051707 GO:0051775 GO:0052689 GO:0055086 GO:0071461 GO:0071704 GO:0071941 GO:0072524 GO:0098542 GO:0098588 GO:0098805 GO:1901135 GO:1901360 GO:1901564 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Glucosamine_iso

Protein Analysis

259

Amino Acids

28.86

Weight (kDa)

5.89

Isoelectric Point (pI)

43.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glucosamine_iso	PF01182	11 - 241	6.1e-64	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49360 AT5G24400
fragaria_vesca	FvH4_7g32550
malus_domestica	MD01G1226300.v1.1 MD07G1296700.v1.1
prunus_persica	Prupe.2G316300_v2.0.a1
pyrus_communis	pycom01g23480 pycom07g26940
rosa_chinensis	RchiOBHm_Chr1g0382391
rosa_laevigata	RLG00000026181
rosa_multiflora	Rmu_sc0000110.1_g000044
rosa_roxburghii	Rroxscaffold_4G00278140
rosa_rugosa	Rorug01G0434000
rosa_samantha	Rh1AG458700 Rh1BG415000 Rh1CG429100 Rh1DG447100
rosa_wichuraiana	Rw1G041230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	474
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	2 cut(s)	216, 694
AccII	CGCG	1 cut(s)	704
AciI	CCGC	5 cut(s)	129, 245, 656, 702, 704
AclWI	GGATC	2 cut(s)	246, 581
AcoI	YGGCCR	2 cut(s)	57, 621
AcsI	RAATTY	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	434
AcyI	GRCGYC	1 cut(s)	485
AfaI	GTAC	2 cut(s)	371, 419
AfiI	CCNNNNNNNGG	1 cut(s)	150
AgeI	ACCGGT	2 cut(s)	7, 589
AgsI	TTSAA	3 cut(s)	28, 183, 713
AjnI	CCWGG	2 cut(s)	143, 496
AluBI	AGCT	8 cut(s)	55, 167, 302, 355, 362, 454, 689, 737
AluI	AGCT	8 cut(s)	55, 167, 302, 355, 362, 454, 689, 737
Alw21I	GWGCWC	1 cut(s)	770
Alw26I	GTCTC	1 cut(s)	492
AlwI	GGATC	2 cut(s)	246, 581
Ama87I	CYCGRG	1 cut(s)	332
AoxI	GGCC	2 cut(s)	57, 621
ApeKI	GCWGC	4 cut(s)	359, 659, 737, 740
ApoI	RAATTY	1 cut(s)	86
AsiGI	ACCGGT	2 cut(s)	7, 589
AspS9I	GGNCC	1 cut(s)	467
AsuHPI	GGTGA	4 cut(s)	22, 103, 535, 543
AsuNHI	GCTAGC	1 cut(s)	355
AvaI	CYCGRG	1 cut(s)	332
AvaII	GGWCC	1 cut(s)	467
BalI	TGGCCA	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	770
BbvI	GCAGC	4 cut(s)	371, 646, 724, 727
BccI	CCATC	2 cut(s)	266, 779
BceAI	ACGGC	2 cut(s)	84, 608
BciT130I	CCWGG	2 cut(s)	145, 498
BcoDI	GTCTC	1 cut(s)	492
BfaI	CTAG	2 cut(s)	356, 458
BisI	GCNGC	6 cut(s)	130, 360, 657, 660, 738, 741
BlsI	GCNGC	6 cut(s)	131, 361, 658, 661, 739, 742
Bme1390I	CCNGG	2 cut(s)	145, 498
Bme18I	GGWCC	1 cut(s)	467
BmeT110I	CYCGRG	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	467
BmiI	GGNNCC	4 cut(s)	6, 291, 468, 725
BmrFI	CCNGG	2 cut(s)	145, 498
BmtI	GCTAGC	1 cut(s)	359
Bpu10I	CCTNAGC	1 cut(s)	555
Bsa29I	ATCGAT	1 cut(s)	321
BsaHI	GRCGYC	1 cut(s)	485
BsaJI	CCNNGG	3 cut(s)	285, 496, 702
BsaWI	WCCGGW	3 cut(s)	7, 469, 589
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse118I	RCCGGY	2 cut(s)	7, 589
Bse1I	ACTGG	1 cut(s)	293
BseBI	CCWGG	2 cut(s)	145, 498
BseCI	ATCGAT	1 cut(s)	321
BseDI	CCNNGG	3 cut(s)	285, 496, 702
BseGI	GGATG	2 cut(s)	712, 771
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	521
BseNI	ACTGG	1 cut(s)	293
BseRI	GAGGAG	3 cut(s)	31, 117, 389
BseXI	GCAGC	4 cut(s)	371, 646, 724, 727
Bsh1236I	CGCG	1 cut(s)	704
BshFI	GGCC	2 cut(s)	59, 623
BshNI	GGYRCC	1 cut(s)	4
BshTI	ACCGGT	2 cut(s)	7, 589
BshVI	ATCGAT	1 cut(s)	321
BsiHKAI	GWGCWC	1 cut(s)	770
BsiHKCI	CYCGRG	1 cut(s)	332
BsiSI	CCGG	4 cut(s)	8, 126, 470, 590
BslFI	GGGAC	1 cut(s)	480
BslI	CCNNNNNNNGG	1 cut(s)	150
BsmAI	GTCTC	1 cut(s)	492
BsmBI	CGTCTC	1 cut(s)	492
BsmFI	GGGAC	1 cut(s)	480
BsnI	GGCC	2 cut(s)	59, 623
BsoBI	CYCGRG	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	770
Bsp143I	GATC	5 cut(s)	73, 238, 445, 510, 573
BspACI	CCGC	5 cut(s)	129, 245, 656, 702, 704
BspANI	GGCC	2 cut(s)	59, 623
BspCNI	CTCAG	1 cut(s)	520
BspDI	ATCGAT	1 cut(s)	321
BspFNI	CGCG	1 cut(s)	704
BspLI	GGNNCC	4 cut(s)	6, 291, 468, 725
BspOI	GCTAGC	1 cut(s)	359
BspPI	GGATC	2 cut(s)	246, 581
BspT107I	GGYRCC	1 cut(s)	4
BsrFI	RCCGGY	2 cut(s)	7, 589
BsrI	ACTGG	1 cut(s)	293
BssAI	RCCGGY	2 cut(s)	7, 589
BssECI	CCNNGG	3 cut(s)	285, 496, 702
BssMI	GATC	5 cut(s)	73, 238, 445, 510, 573
BssNI	GRCGYC	1 cut(s)	485
BssT1I	CCWWGG	1 cut(s)	285
Bst2UI	CCWGG	2 cut(s)	145, 498
Bst4CI	ACNGT	4 cut(s)	115, 441, 476, 564
Bst6I	CTCTTC	1 cut(s)	8
BstACI	GRCGYC	1 cut(s)	485
BstC8I	GCNNGC	3 cut(s)	57, 357, 642
BstDEI	CTNAG	3 cut(s)	195, 507, 555
BstDSI	CCRYGG	1 cut(s)	702
BstF5I	GGATG	2 cut(s)	712, 771
BstFNI	CGCG	1 cut(s)	704
BstKTI	GATC	5 cut(s)	76, 241, 448, 513, 576
BstMAI	GTCTC	1 cut(s)	492
BstMBI	GATC	5 cut(s)	73, 238, 445, 510, 573
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstNI	CCWGG	2 cut(s)	145, 498
BstNSI	RCATGY	1 cut(s)	506
BstSCI	CCNGG	2 cut(s)	143, 496
BstUI	CGCG	1 cut(s)	704
BstV1I	GCAGC	4 cut(s)	371, 646, 724, 727
Bsu15I	ATCGAT	1 cut(s)	321
BsuRI	GGCC	2 cut(s)	59, 623
BsuTUI	ATCGAT	1 cut(s)	321
BtgI	CCRYGG	1 cut(s)	702
BtsCI	GGATG	2 cut(s)	712, 771
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	3 cut(s)	57, 357, 642
Cfr10I	RCCGGY	2 cut(s)	7, 589
Cfr13I	GGNCC	1 cut(s)	467
Cfr42I	CCGCGG	1 cut(s)	705
ClaI	ATCGAT	1 cut(s)	321
CseI	GACGC	2 cut(s)	474, 732
Csp6I	GTAC	2 cut(s)	370, 418
CspAI	ACCGGT	2 cut(s)	7, 589
CviAII	CATG	4 cut(s)	242, 481, 503, 758
CviQI	GTAC	2 cut(s)	370, 418
DdeI	CTNAG	3 cut(s)	195, 507, 555
DpnI	GATC	5 cut(s)	75, 240, 447, 512, 575
DpnII	GATC	5 cut(s)	73, 238, 445, 510, 573
DrdI	GACNNNNNNGTC	1 cut(s)	474
DseDI	GACNNNNNNGTC	1 cut(s)	474
EaeI	YGGCCR	2 cut(s)	57, 621
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
Eco130I	CCWWGG	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	467
Eco57I	CTGAAG	1 cut(s)	434
Eco88I	CYCGRG	1 cut(s)	332
EcoRII	CCWGG	2 cut(s)	143, 496
EcoT14I	CCWWGG	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	285
Esp3I	CGTCTC	1 cut(s)	492
FaeI	CATG	4 cut(s)	245, 484, 506, 761
FaqI	GGGAC	1 cut(s)	480
FatI	CATG	4 cut(s)	241, 480, 502, 757
FblI	GTMKAC	2 cut(s)	216, 694
Fnu4HI	GCNGC	6 cut(s)	130, 360, 657, 660, 738, 741
FokI	GGATG	2 cut(s)	719, 758
Fsp4HI	GCNGC	6 cut(s)	130, 360, 657, 660, 738, 741
FspBI	CTAG	2 cut(s)	356, 458
GluI	GCNGC	6 cut(s)	130, 360, 657, 660, 738, 741
HaeIII	GGCC	2 cut(s)	59, 623
HapII	CCGG	4 cut(s)	8, 126, 470, 590
HgaI	GACGC	2 cut(s)	474, 732
Hin1I	GRCGYC	1 cut(s)	485
Hin1II	CATG	4 cut(s)	245, 484, 506, 761
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	4 cut(s)	179, 330, 548, 647
HpaII	CCGG	4 cut(s)	8, 126, 470, 590
HphI	GGTGA	4 cut(s)	22, 103, 535, 543
Hpy166II	GTNNAC	3 cut(s)	217, 397, 695
Hpy188I	TCNGA	2 cut(s)	413, 510
Hpy188III	TCNNGA	2 cut(s)	28, 151
Hpy8I	GTNNAC	3 cut(s)	217, 397, 695
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	2 cut(s)	335, 514
HpyCH4III	ACNGT	4 cut(s)	115, 441, 476, 564
HpyCH4IV	ACGT	1 cut(s)	416
HpyCH4V	TGCA	1 cut(s)	93
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	3 cut(s)	195, 507, 555
HpySE526I	ACGT	1 cut(s)	416
Hsp92I	GRCGYC	1 cut(s)	485
Hsp92II	CATG	4 cut(s)	245, 484, 506, 761
KspI	CCGCGG	1 cut(s)	705
Kzo9I	GATC	5 cut(s)	73, 238, 445, 510, 573
LmnI	GCTCC	3 cut(s)	52, 172, 773
Lsp1109I	GCAGC	4 cut(s)	371, 646, 724, 727
MaeI	CTAG	2 cut(s)	356, 458
MaeII	ACGT	1 cut(s)	416
MaeIII	GTNAC	2 cut(s)	476, 532
MalI	GATC	5 cut(s)	75, 240, 447, 512, 575
MboI	GATC	5 cut(s)	73, 238, 445, 510, 573
MboII	GAAGA	3 cut(s)	25, 417, 440
MfeI	CAATTG	2 cut(s)	183, 598
MhlI	GDGCHC	1 cut(s)	770
MlsI	TGGCCA	1 cut(s)	59
MluCI	AATT	4 cut(s)	86, 155, 183, 598
MluNI	TGGCCA	1 cut(s)	59
MlyI	GAGTC	1 cut(s)	324
MnlI	CCTC	9 cut(s)	9, 12, 91, 95, 146, 216, 367, 392, 765
Mox20I	TGGCCA	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	1 cut(s)	666
Msp20I	TGGCCA	1 cut(s)	59
MspA1I	CMGCKG	4 cut(s)	302, 362, 689, 704
MspI	CCGG	4 cut(s)	8, 126, 470, 590
MspR9I	CCNGG	2 cut(s)	145, 498
MunI	CAATTG	2 cut(s)	183, 598
MvaI	CCWGG	2 cut(s)	145, 498
MvnI	CGCG	1 cut(s)	704
MwoI	GCNNNNNNNGC	1 cut(s)	356
NdeII	GATC	5 cut(s)	73, 238, 445, 510, 573
NheI	GCTAGC	1 cut(s)	355
NlaIII	CATG	4 cut(s)	245, 484, 506, 761
NlaIV	GGNNCC	4 cut(s)	6, 291, 468, 725
NmeAIII	GCCGAG	1 cut(s)	376
NmuCI	GTSAC	2 cut(s)	476, 532
NspI	RCATGY	1 cut(s)	506
PfeI	GAWTC	3 cut(s)	179, 548, 647
PinAI	ACCGGT	2 cut(s)	7, 589
PkrI	GCNGC	6 cut(s)	131, 361, 658, 661, 739, 742
PleI	GAGTC	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	324
Psp6I	CCWGG	2 cut(s)	143, 496
PspGI	CCWGG	2 cut(s)	143, 496
PspN4I	GGNNCC	4 cut(s)	6, 291, 468, 725
PspPI	GGNCC	1 cut(s)	467
PvuII	CAGCTG	3 cut(s)	302, 362, 689
RsaI	GTAC	2 cut(s)	371, 419
RsaNI	GTAC	2 cut(s)	370, 418
SacII	CCGCGG	1 cut(s)	705
SalI	GTCGAC	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	666
SatI	GCNGC	6 cut(s)	130, 360, 657, 660, 738, 741
Sau3AI	GATC	5 cut(s)	73, 238, 445, 510, 573
Sau96I	GGNCC	1 cut(s)	467
SchI	GAGTC	1 cut(s)	324
ScrFI	CCNGG	2 cut(s)	145, 498
SduI	GDGCHC	1 cut(s)	770
Sfr303I	CCGCGG	1 cut(s)	705
SgrAI	CRCCGGYG	1 cut(s)	7
SgrBI	CCGCGG	1 cut(s)	705
SinI	GGWCC	1 cut(s)	467
Sse9I	AATT	4 cut(s)	86, 155, 183, 598
SsiI	CCGC	5 cut(s)	129, 245, 656, 702, 704
SspMI	CTAG	2 cut(s)	356, 458
StyD4I	CCNGG	2 cut(s)	143, 496
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	4 cut(s)	115, 441, 476, 564
TaiI	ACGT	1 cut(s)	419
TaqI	TCGA	3 cut(s)	216, 321, 444
TasI	AATT	4 cut(s)	86, 155, 183, 598
TauI	GCSGC	2 cut(s)	132, 659
TfiI	GAWTC	3 cut(s)	179, 548, 647
Tru1I	TTAA	1 cut(s)	666
Tru9I	TTAA	1 cut(s)	666
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	2 cut(s)	476, 532
TseI	GCWGC	4 cut(s)	359, 659, 737, 740
Tsp45I	GTSAC	2 cut(s)	476, 532
TspDTI	ATGAA	1 cut(s)	54
TspGWI	ACGGA	1 cut(s)	342
TspRI	CASTG	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	467
XapI	RAATTY	1 cut(s)	86
XceI	RCATGY	1 cut(s)	506
XmiI	GTMKAC	2 cut(s)	216, 694
XspI	CTAG	2 cut(s)	356, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.