Rh1BG415000

6-phosphogluconolactonase 4

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
53712071 .. 53714724
2654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG415000.1

Sequence Viewer

Length: 957 bp
ATGGCCTCCACTCTCTCACTCTCATCGTCTCTCCGTTATTTCCTCCCCCCAACGCGTACATCTCACGCGCCGGTGATCCCTCTCTTCGCGTCGCCGAGACTCCGACCGCGCTCGATCAAACCGCTCCGCGCGAATCTCAAGGCCCCGATTTCCGCATTGGGATCATCATCGCCGTCGGCGTCGTCAACGGCTGGGATGGCGGGTCAGAACAAGAAGAAGGTGGAGGTGTTTGACTCGGAGGAGCAGCTGGCGGTGCAGCTGGCGAAGTACACCGCCGACCTATCGGATAAGTTCTCCAAAGAGAGAGGCGCCTTCACCGTCGTTTTGTCCGGTGGCTCGCTCATCAAGGCGCTCAGGAAATTGTGTGAAGCGCCGTATTTGGATTCTGTGGAATGGGGCAAGTGGCATGTGTTATGGGTTGATGAGAGAGTGGTGCCCAAGGATCATGAGGACAGTAACTACAAGCTTGCTCTTGATGGGTTCCTCTCTAAGGTACCGATTCCCGCGGGCAATGTTTATGCCATTAATGATGCACTTTCAGCTGAGGGTGCAGCAGATGATTATGAGACCTGTCTCAAACATTTGGTTACCCATGGTGTGCTAGCCACTTCAAAAGCTACTGGGTTTCCAAAGTTTGATCTTATGCTTTTGGGAATGGGTCCAGATGGGCATGTTGCTTCTCTATTCCCTGGTCATCCTCTTGTCAATGAGAAGGAGAAATGGGTCACTTTTATTAAGGATTCACCAAAACCACCGCCAGAGAGAATTACTTTTACATTTCCAGTGATCAACTCGTCTGCATATATTGCAATGGTTGTCAATGGGGCTGGTAAATCAGGTGCTGTGCAGACGGCTCTTGGAAATAGTGAGAACTCTGCTACTTTGCCTGTTCAATTGGTTGCACCGGAAGATGAATTGACTTGGTTCTTAGACAAGGAGGCTGCTTCGAAGCTGTAG

Protein Analysis

318

Amino Acids

34.25

Weight (kDa)

7.75

Isoelectric Point (pI)

35.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glucosamine_iso PF01182 79 - 308 1e-72 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012990)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49360 AT5G24400
fragaria_vesca FvH4_7g32550
malus_domestica MD01G1226300.v1.1 MD07G1296700.v1.1
prunus_persica Prupe.2G316300_v2.0.a1
pyrus_communis pycom01g23480 pycom07g26940
rosa_chinensis RchiOBHm_Chr1g0382391
rosa_laevigata RLG00000026181
rosa_multiflora Rmu_sc0000110.1_g000044
rosa_roxburghii Rroxscaffold_4G00278140
rosa_rugosa Rorug01G0434000
rosa_samantha Rh1AG458700 Rh1BG415000 Rh1CG429100 Rh1DG447100
rosa_wichuraiana Rw1G041230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 493
AccB1I GGYRCC 3 cut(s) 308, 433, 493
AccBSI CCGCTC 1 cut(s) 124
AccII CGCG 7 cut(s) 55, 68, 89, 109, 129, 131, 506
AclWI GGATC 3 cut(s) 70, 169, 450
AcyI GRCGYC 2 cut(s) 179, 309
AfaI GTAC 3 cut(s) 58, 269, 495
AfiI CCNNNNNNNGG 1 cut(s) 490
AflIII ACRYGT 1 cut(s) 53
AgsI TTSAA 2 cut(s) 612, 893
AjnI CCWGG 1 cut(s) 688
AluBI AGCT 6 cut(s) 247, 259, 466, 542, 617, 952
AluI AGCT 6 cut(s) 247, 259, 466, 542, 617, 952
Alw26I GTCTC 4 cut(s) 33, 91, 560, 578
AlwI GGATC 3 cut(s) 70, 169, 450
AlwNI CAGNNNCTG 1 cut(s) 842
AoxI GGCC 2 cut(s) 3, 141
ApeKI GCWGC 4 cut(s) 244, 256, 551, 941
AseI ATTAAT 1 cut(s) 525
Asp718I GGTACC 1 cut(s) 493
AspLEI GCGC 6 cut(s) 70, 111, 131, 311, 352, 373
AspS9I GGNCC 2 cut(s) 142, 659
AsuHPI GGTGA 3 cut(s) 85, 307, 735
AsuII TTCGAA 1 cut(s) 947
AsuNHI GCTAGC 1 cut(s) 601
AvaII GGWCC 1 cut(s) 659
BaeGI GKGCMC 1 cut(s) 438
BanI GGYRCC 3 cut(s) 308, 433, 493
BbvCI CCTCAGC 1 cut(s) 543
BbvI GCAGC 4 cut(s) 256, 268, 563, 928
BccI CCATC 3 cut(s) 190, 470, 659
BceAI ACGGC 4 cut(s) 157, 204, 358, 867
BciT130I CCWGG 1 cut(s) 690
BclI TGATCA 1 cut(s) 786
BcoDI GTCTC 4 cut(s) 33, 91, 560, 578
BfaI CTAG 1 cut(s) 602
BfmI CTRYAG 1 cut(s) 953
BfoI RGCGCY 3 cut(s) 312, 353, 374
BisI GCNGC 4 cut(s) 245, 257, 552, 942
BlsI GCNGC 4 cut(s) 246, 258, 553, 943
Bme1390I CCNGG 1 cut(s) 690
Bme18I GGWCC 1 cut(s) 659
BmgT120I GGNCC 2 cut(s) 142, 659
BmiI GGNNCC 6 cut(s) 144, 310, 435, 482, 495, 660
BmrFI CCNGG 1 cut(s) 690
BmrI ACTGGG 1 cut(s) 630
BmsI GCATC 1 cut(s) 520
BmtI GCTAGC 1 cut(s) 605
BmuI ACTGGG 1 cut(s) 630
Bpu10I CCTNAGC 2 cut(s) 353, 543
Bpu14I TTCGAA 1 cut(s) 947
BpuEI CTTGAG 1 cut(s) 122
BsaBI GATNNNNATC 1 cut(s) 166
BsaHI GRCGYC 2 cut(s) 179, 309
BsaI GGTCTC 1 cut(s) 560
BsaJI CCNNGG 4 cut(s) 438, 504, 592, 688
BsaWI WCCGGW 2 cut(s) 329, 904
Bsc4I CCNNNNNNNGG 1 cut(s) 490
Bse118I RCCGGY 1 cut(s) 70
Bse1I ACTGG 2 cut(s) 625, 782
Bse3DI GCAATG 2 cut(s) 517, 816
Bse8I GATNNNNATC 1 cut(s) 166
BseBI CCWGG 1 cut(s) 690
BseDI CCNNGG 4 cut(s) 438, 504, 592, 688
BseGI GGATG 2 cut(s) 201, 694
BseJI GATNNNNATC 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 490
BseMI GCAATG 2 cut(s) 517, 816
BseMII CTCAG 2 cut(s) 367, 534
BseNI ACTGG 2 cut(s) 625, 782
BseRI GAGGAG 1 cut(s) 254
BseSI GKGCMC 1 cut(s) 438
BseXI GCAGC 4 cut(s) 256, 268, 563, 928
BseYI CCCAGC 1 cut(s) 191
BsgI GTGCAG 3 cut(s) 275, 570, 866
Bsh1236I CGCG 7 cut(s) 55, 68, 89, 109, 129, 131, 506
Bsh1285I CGRYCG 1 cut(s) 107
BshFI GGCC 2 cut(s) 5, 143
BshNI GGYRCC 3 cut(s) 308, 433, 493
BsiEI CGRYCG 1 cut(s) 107
BsiSI CCGG 3 cut(s) 71, 330, 905
BslI CCNNNNNNNGG 1 cut(s) 490
BsmAI GTCTC 4 cut(s) 33, 91, 560, 578
BsmBI CGTCTC 1 cut(s) 33
BsnI GGCC 2 cut(s) 5, 143
Bso31I GGTCTC 1 cut(s) 560
Bsp119I TTCGAA 1 cut(s) 947
Bsp1286I GDGCHC 1 cut(s) 438
Bsp143I GATC 6 cut(s) 75, 114, 161, 442, 637, 786
Bsp19I CCATGG 1 cut(s) 592
BspANI GGCC 2 cut(s) 5, 143
BspCNI CTCAG 2 cut(s) 366, 535
BspFNI CGCG 7 cut(s) 55, 68, 89, 109, 129, 131, 506
BspHI TCATGA 1 cut(s) 445
BspLI GGNNCC 6 cut(s) 144, 310, 435, 482, 495, 660
BspOI GCTAGC 1 cut(s) 605
BspPI GGATC 3 cut(s) 70, 169, 450
BspT104I TTCGAA 1 cut(s) 947
BspT107I GGYRCC 3 cut(s) 308, 433, 493
BspTNI GGTCTC 1 cut(s) 560
BsrBI CCGCTC 1 cut(s) 124
BsrDI GCAATG 2 cut(s) 517, 816
BsrFI RCCGGY 1 cut(s) 70
BsrI ACTGG 2 cut(s) 625, 782
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 4 cut(s) 438, 504, 592, 688
BssMI GATC 6 cut(s) 75, 114, 161, 442, 637, 786
BssNI GRCGYC 2 cut(s) 179, 309
BssT1I CCWWGG 2 cut(s) 438, 592
Bst2UI CCWGG 1 cut(s) 690
Bst4CI ACNGT 2 cut(s) 319, 455
Bst6I CTCTTC 1 cut(s) 89
BstACI GRCGYC 2 cut(s) 179, 309
BstAPI GCANNNNNTGC 1 cut(s) 806
BstBI TTCGAA 1 cut(s) 947
BstC8I GCNNGC 6 cut(s) 249, 261, 338, 468, 508, 603
BstDEI CTNAG 4 cut(s) 353, 489, 543, 928
BstDSI CCRYGG 2 cut(s) 504, 592
BstEII GGTNACC 1 cut(s) 586
BstENI CCTNNNNNAGG 1 cut(s) 488
BstF5I GGATG 2 cut(s) 201, 694
BstFNI CGCG 7 cut(s) 55, 68, 89, 109, 129, 131, 506
BstH2I RGCGCY 3 cut(s) 312, 353, 374
BstHHI GCGC 6 cut(s) 70, 111, 131, 311, 352, 373
BstKTI GATC 6 cut(s) 78, 117, 164, 445, 640, 789
BstMAI GTCTC 4 cut(s) 33, 91, 560, 578
BstMBI GATC 6 cut(s) 75, 114, 161, 442, 637, 786
BstMCI CGRYCG 1 cut(s) 107
BstMWI GCNNNNNNNGC 5 cut(s) 197, 253, 539, 548, 806
BstNI CCWGG 1 cut(s) 690
BstNSI RCATGY 2 cut(s) 410, 674
BstPI GGTNACC 1 cut(s) 586
BstSCI CCNGG 1 cut(s) 688
BstSFI CTRYAG 1 cut(s) 953
BstSLI GKGCMC 1 cut(s) 438
BstUI CGCG 7 cut(s) 55, 68, 89, 109, 129, 131, 506
BstV1I GCAGC 4 cut(s) 256, 268, 563, 928
BsuRI GGCC 2 cut(s) 5, 143
BtgI CCRYGG 2 cut(s) 504, 592
BtgZI GCGATG 1 cut(s) 153
BtsCI GGATG 2 cut(s) 201, 694
BtsIMutI CAGTG 1 cut(s) 789
Cac8I GCNNGC 6 cut(s) 249, 261, 338, 468, 508, 603
CaiI CAGNNNCTG 1 cut(s) 842
CciI TCATGA 1 cut(s) 445
CfoI GCGC 6 cut(s) 70, 111, 131, 311, 352, 373
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 2 cut(s) 142, 659
Cfr42I CCGCGG 1 cut(s) 507
CseI GACGC 2 cut(s) 78, 168
Csp6I GTAC 3 cut(s) 57, 268, 494
CviAII CATG 4 cut(s) 407, 446, 593, 671
CviQI GTAC 3 cut(s) 57, 268, 494
DdeI CTNAG 4 cut(s) 353, 489, 543, 928
DinI GGCGCC 1 cut(s) 310
DpnI GATC 6 cut(s) 77, 116, 163, 444, 639, 788
DpnII GATC 6 cut(s) 75, 114, 161, 442, 637, 786
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
Eco130I CCWWGG 2 cut(s) 438, 592
Eco31I GGTCTC 1 cut(s) 560
Eco47I GGWCC 1 cut(s) 659
Eco91I GGTNACC 1 cut(s) 586
EcoNI CCTNNNNNAGG 1 cut(s) 488
EcoO109I RGGNCCY 1 cut(s) 142
EcoO65I GGTNACC 1 cut(s) 586
EcoRII CCWGG 1 cut(s) 688
EcoT14I CCWWGG 2 cut(s) 438, 592
EgeI GGCGCC 1 cut(s) 310
EheI GGCGCC 1 cut(s) 310
ErhI CCWWGG 2 cut(s) 438, 592
Esp3I CGTCTC 1 cut(s) 33
FaeI CATG 4 cut(s) 410, 449, 596, 674
FatI CATG 4 cut(s) 406, 445, 592, 670
FauI CCCGC 3 cut(s) 193, 499, 511
FbaI TGATCA 1 cut(s) 786
Fnu4HI GCNGC 4 cut(s) 245, 257, 552, 942
FokI GGATG 2 cut(s) 208, 681
Fsp4HI GCNGC 4 cut(s) 245, 257, 552, 942
FspBI CTAG 1 cut(s) 602
GlaI GCGC 6 cut(s) 69, 110, 130, 310, 351, 372
GluI GCNGC 4 cut(s) 245, 257, 552, 942
GsaI CCCAGC 1 cut(s) 195
HaeII RGCGCY 3 cut(s) 312, 353, 374
HaeIII GGCC 2 cut(s) 5, 143
HapII CCGG 3 cut(s) 71, 330, 905
HgaI GACGC 2 cut(s) 78, 168
HhaI GCGC 6 cut(s) 70, 111, 131, 311, 352, 373
Hin1I GRCGYC 2 cut(s) 179, 309
Hin1II CATG 4 cut(s) 410, 449, 596, 674
Hin6I GCGC 6 cut(s) 68, 109, 129, 309, 350, 371
HinP1I GCGC 6 cut(s) 68, 109, 129, 309, 350, 371
HincII GTYRAC 1 cut(s) 186
HindII GTYRAC 1 cut(s) 186
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 6 cut(s) 99, 133, 233, 383, 499, 740
HpaII CCGG 3 cut(s) 71, 330, 905
HphI GGTGA 3 cut(s) 85, 307, 735
Hpy166II GTNNAC 2 cut(s) 186, 270
Hpy188I TCNGA 4 cut(s) 104, 207, 238, 286
Hpy188III TCNNGA 4 cut(s) 355, 446, 473, 662
Hpy8I GTNNAC 2 cut(s) 186, 270
Hpy99I CGWCG 4 cut(s) 94, 178, 184, 323
HpyAV CCTTC 3 cut(s) 211, 322, 706
HpyCH4III ACNGT 2 cut(s) 319, 455
HpyCH4V TGCA 7 cut(s) 256, 533, 551, 800, 809, 847, 902
HpyF10VI GCNNNNNNNGC 5 cut(s) 197, 253, 539, 548, 806
HpyF3I CTNAG 4 cut(s) 353, 489, 543, 928
Hsp92I GRCGYC 2 cut(s) 179, 309
Hsp92II CATG 4 cut(s) 410, 449, 596, 674
HspAI GCGC 6 cut(s) 68, 109, 129, 309, 350, 371
KasI GGCGCC 1 cut(s) 308
KpnI GGTACC 1 cut(s) 497
Ksp22I TGATCA 1 cut(s) 786
KspI CCGCGG 1 cut(s) 507
Kzo9I GATC 6 cut(s) 75, 114, 161, 442, 637, 786
LmnI GCTCC 2 cut(s) 129, 241
Lsp1109I GCAGC 4 cut(s) 256, 268, 563, 928
LweI GCATC 1 cut(s) 520
MaeI CTAG 1 cut(s) 602
MaeIII GTNAC 3 cut(s) 455, 586, 724
MalI GATC 6 cut(s) 77, 116, 163, 444, 639, 788
MbiI CCGCTC 1 cut(s) 124
MboI GATC 6 cut(s) 75, 114, 161, 442, 637, 786
MboII GAAGA 3 cut(s) 76, 226, 920
MfeI CAATTG 1 cut(s) 893
MhlI GDGCHC 1 cut(s) 438
MluCI AATT 4 cut(s) 359, 765, 893, 914
MluI ACGCGT 1 cut(s) 53
Mly113I GGCGCC 1 cut(s) 309
MlyI GAGTC 2 cut(s) 93, 227
MmeI TCCRAC 1 cut(s) 127
MseI TTAA 2 cut(s) 525, 735
MspA1I CMGCKG 4 cut(s) 247, 259, 506, 542
MspI CCGG 3 cut(s) 71, 330, 905
MspR9I CCNGG 1 cut(s) 690
MunI CAATTG 1 cut(s) 893
MvaI CCWGG 1 cut(s) 690
MvnI CGCG 7 cut(s) 55, 68, 89, 109, 129, 131, 506
MwoI GCNNNNNNNGC 5 cut(s) 197, 253, 539, 548, 806
NarI GGCGCC 1 cut(s) 309
NcoI CCATGG 1 cut(s) 592
NdeII GATC 6 cut(s) 75, 114, 161, 442, 637, 786
NheI GCTAGC 1 cut(s) 601
NlaIII CATG 4 cut(s) 410, 449, 596, 674
NlaIV GGNNCC 6 cut(s) 144, 310, 435, 482, 495, 660
NmeAIII GCCGAG 1 cut(s) 120
NmuCI GTSAC 1 cut(s) 724
NspI RCATGY 2 cut(s) 410, 674
NspV TTCGAA 1 cut(s) 947
PagI TCATGA 1 cut(s) 445
PcsI WCGNNNNNNNCGW 1 cut(s) 176
PfeI GAWTC 4 cut(s) 133, 383, 499, 740
PkrI GCNGC 4 cut(s) 246, 258, 553, 943
PleI GAGTC 2 cut(s) 93, 227
PluTI GGCGCC 1 cut(s) 312
PpsI GAGTC 2 cut(s) 93, 227
PshBI ATTAAT 1 cut(s) 525
Psp6I CCWGG 1 cut(s) 688
PspEI GGTNACC 1 cut(s) 586
PspFI CCCAGC 1 cut(s) 191
PspGI CCWGG 1 cut(s) 688
PspN4I GGNNCC 6 cut(s) 144, 310, 435, 482, 495, 660
PspPI GGNCC 2 cut(s) 142, 659
PstNI CAGNNNCTG 1 cut(s) 842
PvuII CAGCTG 3 cut(s) 247, 259, 542
RsaI GTAC 3 cut(s) 58, 269, 495
RsaNI GTAC 3 cut(s) 57, 268, 494
SacII CCGCGG 1 cut(s) 507
SaqAI TTAA 2 cut(s) 525, 735
SatI GCNGC 4 cut(s) 245, 257, 552, 942
Sau3AI GATC 6 cut(s) 75, 114, 161, 442, 637, 786
Sau96I GGNCC 2 cut(s) 142, 659
SchI GAGTC 2 cut(s) 93, 227
ScrFI CCNGG 1 cut(s) 690
SduI GDGCHC 1 cut(s) 438
SfaNI GCATC 1 cut(s) 520
SfcI CTRYAG 1 cut(s) 953
SfoI GGCGCC 1 cut(s) 310
Sfr303I CCGCGG 1 cut(s) 507
SfuI TTCGAA 1 cut(s) 947
SgrAI CRCCGGYG 1 cut(s) 70
SgrBI CCGCGG 1 cut(s) 507
SinI GGWCC 1 cut(s) 659
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 4 cut(s) 359, 765, 893, 914
SspDI GGCGCC 1 cut(s) 308
SspMI CTAG 1 cut(s) 602
StyD4I CCNGG 1 cut(s) 688
StyI CCWWGG 2 cut(s) 438, 592
TaaI ACNGT 2 cut(s) 319, 455
TaqI TCGA 2 cut(s) 113, 947
TasI AATT 4 cut(s) 359, 765, 893, 914
TatI WGTACW 1 cut(s) 267
TfiI GAWTC 4 cut(s) 133, 383, 499, 740
Tru1I TTAA 2 cut(s) 525, 735
Tru9I TTAA 2 cut(s) 525, 735
TscAI CASTG 1 cut(s) 789
TseFI GTSAC 1 cut(s) 724
TseI GCWGC 4 cut(s) 244, 256, 551, 941
Tsp45I GTSAC 1 cut(s) 724
TspDTI ATGAA 1 cut(s) 927
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 1 cut(s) 789
VpaK11BI GGWCC 1 cut(s) 659
VspI ATTAAT 1 cut(s) 525
XagI CCTNNNNNAGG 1 cut(s) 488
XceI RCATGY 2 cut(s) 410, 674
XspI CTAG 1 cut(s) 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.