Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0012990

Physical Location & Seq

Genomic Coordinates Reverse (-)

68717892 .. 68719777

Gene Structure 1886 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG429100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCCTCCACTCTCTCACTCTCATCGTCTCTCCGTTATTTCCTCCCCCCAACGCGTACATCTCACGCGCCGGTGATCCCTCTCTTCGCGTCGCCGAGACTCCGACCGCGCTCGATCAAACCCCTCCGCGCGAATCTCAAGACCCCGATTTACGCATTGGGATCATCATCGCCGTCTGCGTCGTCAACGGCTGGGATGGCGGGTCAGAATAAGAAGAAGGTGGAGGTGTTTGACTCGGAGGAGCAGCTGGCGGTGCAGCTGGCCAAGTACACCGCCGACCTATCGGATAAGTTCTCCAAAGAGAGAGGCGCCTTCACCGTCGTTTTGTCCGGTGGCTCACTCATCAAGGCGCTCAGGAAATTGTGTGAAGCGCCGTATTTGGATTCTGTGGAATGGGGCAAGTGGCATGTGTTATGGGTTGATGAGAGAGTGGTGCCAAAGGATCATGAGGACAGTAACTACAAGCTTGCTCTTGATGGGTTCCTCTCTAAGGTACCGATTCCCGCGGGCAATGTTTATGCCATTAATGATGCACTTTCAGCTGAGGGTGCAGCAGATGATTATGAGACTTGTCTCAAACATTTGGTTACCAATGGTGTGCTAGCCACTTCAAAAGCTACTGGGTTTCCAAAGTTTGATCTTATGCTTTTGGGAATGGGTCCAGATGGGCATGTTGCTTCTCTATTCCCCGGTCATCCTCTTGTCAATGAGAAGGAGAAATGGGTCACCTTTATTAAGGATTCACCAAAACCACCGCCAGAGAGAATTACTTTTACATTTCCAGTGATCAACTCGTCTGCATATATTGCAATGGTTGTCAATGGGGCTGGTAAATCTGGTGCTGTGCAGACGGCTCTTGGAAATAGTGAGAACTCTGCTACTTTGCCTGTTCAGTTGGTTGCACCTGAAGATGAATTGACTTGGTTCTTAGACAAGGAGGCTGCTTCGAAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0006081 GO:0006082 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016787 GO:0016788 GO:0017057 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0031090 GO:0034641 GO:0042126 GO:0042128 GO:0042579 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0050896 GO:0051156 GO:0051186 GO:0051704 GO:0051707 GO:0051775 GO:0052689 GO:0055086 GO:0071461 GO:0071704 GO:0071941 GO:0072524 GO:0098542 GO:0098588 GO:0098805 GO:1901135 GO:1901360 GO:1901564 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Glucosamine_iso

Protein Analysis

318

Amino Acids

34.33

Weight (kDa)

7.73

Isoelectric Point (pI)

34.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glucosamine_iso	PF01182	79 - 308	1e-72	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49360 AT5G24400
fragaria_vesca	FvH4_7g32550
malus_domestica	MD01G1226300.v1.1 MD07G1296700.v1.1
prunus_persica	Prupe.2G316300_v2.0.a1
pyrus_communis	pycom01g23480 pycom07g26940
rosa_chinensis	RchiOBHm_Chr1g0382391
rosa_laevigata	RLG00000026181
rosa_multiflora	Rmu_sc0000110.1_g000044
rosa_roxburghii	Rroxscaffold_4G00278140
rosa_rugosa	Rorug01G0434000
rosa_samantha	Rh1AG458700 Rh1BG415000 Rh1CG429100 Rh1DG447100
rosa_wichuraiana	Rw1G041230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	493
AccB1I	GGYRCC	3 cut(s)	308, 433, 493
AccII	CGCG	7 cut(s)	55, 68, 89, 109, 129, 131, 506
AciI	CCGC	8 cut(s)	107, 127, 200, 251, 273, 504, 506, 755
AclWI	GGATC	3 cut(s)	70, 169, 450
AcoI	YGGCCR	1 cut(s)	261
AcuI	CTGAAG	1 cut(s)	927
AcyI	GRCGYC	1 cut(s)	309
AfaI	GTAC	3 cut(s)	58, 269, 495
AfiI	CCNNNNNNNGG	1 cut(s)	490
AflIII	ACRYGT	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	612
AluBI	AGCT	6 cut(s)	247, 259, 466, 542, 617, 952
AluI	AGCT	6 cut(s)	247, 259, 466, 542, 617, 952
Alw26I	GTCTC	4 cut(s)	33, 91, 560, 578
AlwI	GGATC	3 cut(s)	70, 169, 450
AoxI	GGCC	2 cut(s)	3, 261
ApeKI	GCWGC	4 cut(s)	244, 256, 551, 941
AseI	ATTAAT	1 cut(s)	525
Asp718I	GGTACC	1 cut(s)	493
AspLEI	GCGC	6 cut(s)	70, 111, 131, 311, 352, 373
AspS9I	GGNCC	1 cut(s)	659
AsuC2I	CCSGG	1 cut(s)	690
AsuHPI	GGTGA	4 cut(s)	85, 307, 718, 735
AsuII	TTCGAA	1 cut(s)	947
AsuNHI	GCTAGC	1 cut(s)	601
AvaII	GGWCC	1 cut(s)	659
BalI	TGGCCA	1 cut(s)	263
BanI	GGYRCC	3 cut(s)	308, 433, 493
BbvCI	CCTCAGC	1 cut(s)	543
BbvI	GCAGC	4 cut(s)	256, 268, 563, 928
BccI	CCATC	3 cut(s)	190, 470, 659
BceAI	ACGGC	4 cut(s)	157, 204, 358, 867
BclI	TGATCA	1 cut(s)	786
BcnI	CCSGG	1 cut(s)	690
BcoDI	GTCTC	4 cut(s)	33, 91, 560, 578
BfaI	CTAG	1 cut(s)	602
BfmI	CTRYAG	1 cut(s)	953
BfoI	RGCGCY	3 cut(s)	312, 353, 374
BisI	GCNGC	4 cut(s)	245, 257, 552, 942
BlsI	GCNGC	4 cut(s)	246, 258, 553, 943
Bme1390I	CCNGG	1 cut(s)	690
Bme18I	GGWCC	1 cut(s)	659
BmgT120I	GGNCC	1 cut(s)	659
BmiI	GGNNCC	5 cut(s)	310, 435, 482, 495, 660
BmrFI	CCNGG	1 cut(s)	690
BmrI	ACTGGG	1 cut(s)	630
BmsI	GCATC	1 cut(s)	520
BmtI	GCTAGC	1 cut(s)	605
BmuI	ACTGGG	1 cut(s)	630
Bpu10I	CCTNAGC	2 cut(s)	353, 543
Bpu14I	TTCGAA	1 cut(s)	947
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	690
BsaBI	GATNNNNATC	1 cut(s)	166
BsaHI	GRCGYC	1 cut(s)	309
BsaJI	CCNNGG	2 cut(s)	504, 688
BsaWI	WCCGGW	1 cut(s)	329
Bsc4I	CCNNNNNNNGG	1 cut(s)	490
Bse118I	RCCGGY	1 cut(s)	70
Bse1I	ACTGG	2 cut(s)	625, 782
Bse3DI	GCAATG	2 cut(s)	517, 816
Bse8I	GATNNNNATC	1 cut(s)	166
BseDI	CCNNGG	2 cut(s)	504, 688
BseGI	GGATG	2 cut(s)	201, 694
BseJI	GATNNNNATC	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	490
BseMI	GCAATG	2 cut(s)	517, 816
BseMII	CTCAG	2 cut(s)	367, 534
BseNI	ACTGG	2 cut(s)	625, 782
BseRI	GAGGAG	1 cut(s)	254
BseXI	GCAGC	4 cut(s)	256, 268, 563, 928
BseYI	CCCAGC	1 cut(s)	191
BsgI	GTGCAG	3 cut(s)	275, 570, 866
Bsh1236I	CGCG	7 cut(s)	55, 68, 89, 109, 129, 131, 506
Bsh1285I	CGRYCG	1 cut(s)	107
BshFI	GGCC	2 cut(s)	5, 263
BshNI	GGYRCC	3 cut(s)	308, 433, 493
BsiEI	CGRYCG	1 cut(s)	107
BsiSI	CCGG	3 cut(s)	71, 330, 690
BslI	CCNNNNNNNGG	1 cut(s)	490
BsmAI	GTCTC	4 cut(s)	33, 91, 560, 578
BsmBI	CGTCTC	1 cut(s)	33
BsnI	GGCC	2 cut(s)	5, 263
Bsp119I	TTCGAA	1 cut(s)	947
Bsp143I	GATC	6 cut(s)	75, 114, 161, 442, 637, 786
BspACI	CCGC	8 cut(s)	107, 127, 200, 251, 273, 504, 506, 755
BspANI	GGCC	2 cut(s)	5, 263
BspCNI	CTCAG	2 cut(s)	366, 535
BspFNI	CGCG	7 cut(s)	55, 68, 89, 109, 129, 131, 506
BspHI	TCATGA	1 cut(s)	445
BspLI	GGNNCC	5 cut(s)	310, 435, 482, 495, 660
BspOI	GCTAGC	1 cut(s)	605
BspPI	GGATC	3 cut(s)	70, 169, 450
BspT104I	TTCGAA	1 cut(s)	947
BspT107I	GGYRCC	3 cut(s)	308, 433, 493
BsrDI	GCAATG	2 cut(s)	517, 816
BsrFI	RCCGGY	1 cut(s)	70
BsrI	ACTGG	2 cut(s)	625, 782
BssAI	RCCGGY	1 cut(s)	70
BssECI	CCNNGG	2 cut(s)	504, 688
BssMI	GATC	6 cut(s)	75, 114, 161, 442, 637, 786
BssNI	GRCGYC	1 cut(s)	309
Bst4CI	ACNGT	2 cut(s)	319, 455
Bst6I	CTCTTC	1 cut(s)	89
BstACI	GRCGYC	1 cut(s)	309
BstAPI	GCANNNNNTGC	1 cut(s)	806
BstBI	TTCGAA	1 cut(s)	947
BstC8I	GCNNGC	5 cut(s)	249, 261, 468, 508, 603
BstDEI	CTNAG	4 cut(s)	353, 489, 543, 928
BstDSI	CCRYGG	1 cut(s)	504
BstEII	GGTNACC	2 cut(s)	586, 724
BstENI	CCTNNNNNAGG	1 cut(s)	488
BstF5I	GGATG	2 cut(s)	201, 694
BstFNI	CGCG	7 cut(s)	55, 68, 89, 109, 129, 131, 506
BstH2I	RGCGCY	3 cut(s)	312, 353, 374
BstHHI	GCGC	6 cut(s)	70, 111, 131, 311, 352, 373
BstKTI	GATC	6 cut(s)	78, 117, 164, 445, 640, 789
BstMAI	GTCTC	4 cut(s)	33, 91, 560, 578
BstMBI	GATC	6 cut(s)	75, 114, 161, 442, 637, 786
BstMCI	CGRYCG	1 cut(s)	107
BstMWI	GCNNNNNNNGC	5 cut(s)	197, 253, 539, 548, 806
BstNSI	RCATGY	2 cut(s)	410, 674
BstPI	GGTNACC	2 cut(s)	586, 724
BstSCI	CCNGG	1 cut(s)	688
BstSFI	CTRYAG	1 cut(s)	953
BstUI	CGCG	7 cut(s)	55, 68, 89, 109, 129, 131, 506
BstV1I	GCAGC	4 cut(s)	256, 268, 563, 928
BsuRI	GGCC	2 cut(s)	5, 263
BtgI	CCRYGG	1 cut(s)	504
BtgZI	GCGATG	1 cut(s)	153
BtsCI	GGATG	2 cut(s)	201, 694
BtsIMutI	CAGTG	1 cut(s)	789
Cac8I	GCNNGC	5 cut(s)	249, 261, 468, 508, 603
CciI	TCATGA	1 cut(s)	445
CfoI	GCGC	6 cut(s)	70, 111, 131, 311, 352, 373
Cfr10I	RCCGGY	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	659
Cfr42I	CCGCGG	1 cut(s)	507
CseI	GACGC	2 cut(s)	78, 168
Csp6I	GTAC	3 cut(s)	57, 268, 494
CviAII	CATG	3 cut(s)	407, 446, 671
CviQI	GTAC	3 cut(s)	57, 268, 494
DdeI	CTNAG	4 cut(s)	353, 489, 543, 928
DinI	GGCGCC	1 cut(s)	310
DpnI	GATC	6 cut(s)	77, 116, 163, 444, 639, 788
DpnII	GATC	6 cut(s)	75, 114, 161, 442, 637, 786
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco47I	GGWCC	1 cut(s)	659
Eco57I	CTGAAG	1 cut(s)	927
Eco91I	GGTNACC	2 cut(s)	586, 724
EcoNI	CCTNNNNNAGG	1 cut(s)	488
EcoO65I	GGTNACC	2 cut(s)	586, 724
EgeI	GGCGCC	1 cut(s)	310
EheI	GGCGCC	1 cut(s)	310
Esp3I	CGTCTC	1 cut(s)	33
FaeI	CATG	3 cut(s)	410, 449, 674
FaiI	YATR	9 cut(s)	408, 415, 447, 519, 564, 644, 672, 802, 804
FatI	CATG	3 cut(s)	406, 445, 670
FauI	CCCGC	3 cut(s)	193, 499, 511
FbaI	TGATCA	1 cut(s)	786
Fnu4HI	GCNGC	4 cut(s)	245, 257, 552, 942
FokI	GGATG	2 cut(s)	208, 681
Fsp4HI	GCNGC	4 cut(s)	245, 257, 552, 942
FspBI	CTAG	1 cut(s)	602
GlaI	GCGC	6 cut(s)	69, 110, 130, 310, 351, 372
GluI	GCNGC	4 cut(s)	245, 257, 552, 942
GsaI	CCCAGC	1 cut(s)	195
HaeII	RGCGCY	3 cut(s)	312, 353, 374
HaeIII	GGCC	2 cut(s)	5, 263
HapII	CCGG	3 cut(s)	71, 330, 690
HgaI	GACGC	2 cut(s)	78, 168
HhaI	GCGC	6 cut(s)	70, 111, 131, 311, 352, 373
Hin1I	GRCGYC	1 cut(s)	309
Hin1II	CATG	3 cut(s)	410, 449, 674
Hin6I	GCGC	6 cut(s)	68, 109, 129, 309, 350, 371
HinP1I	GCGC	6 cut(s)	68, 109, 129, 309, 350, 371
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	6 cut(s)	99, 133, 233, 383, 499, 740
HpaII	CCGG	3 cut(s)	71, 330, 690
HphI	GGTGA	4 cut(s)	85, 307, 718, 735
Hpy166II	GTNNAC	2 cut(s)	186, 270
Hpy188I	TCNGA	4 cut(s)	104, 207, 238, 286
Hpy188III	TCNNGA	5 cut(s)	139, 355, 446, 473, 662
Hpy8I	GTNNAC	2 cut(s)	186, 270
Hpy99I	CGWCG	3 cut(s)	94, 184, 323
HpyAV	CCTTC	3 cut(s)	211, 322, 706
HpyCH4III	ACNGT	2 cut(s)	319, 455
HpyCH4V	TGCA	7 cut(s)	256, 533, 551, 800, 809, 847, 902
HpyF10VI	GCNNNNNNNGC	5 cut(s)	197, 253, 539, 548, 806
HpyF3I	CTNAG	4 cut(s)	353, 489, 543, 928
Hsp92I	GRCGYC	1 cut(s)	309
Hsp92II	CATG	3 cut(s)	410, 449, 674
HspAI	GCGC	6 cut(s)	68, 109, 129, 309, 350, 371
KasI	GGCGCC	1 cut(s)	308
KpnI	GGTACC	1 cut(s)	497
Ksp22I	TGATCA	1 cut(s)	786
KspI	CCGCGG	1 cut(s)	507
Kzo9I	GATC	6 cut(s)	75, 114, 161, 442, 637, 786
LmnI	GCTCC	1 cut(s)	241
Lsp1109I	GCAGC	4 cut(s)	256, 268, 563, 928
LweI	GCATC	1 cut(s)	520
MaeI	CTAG	1 cut(s)	602
MaeIII	GTNAC	3 cut(s)	455, 586, 724
MalI	GATC	6 cut(s)	77, 116, 163, 444, 639, 788
MboI	GATC	6 cut(s)	75, 114, 161, 442, 637, 786
MboII	GAAGA	3 cut(s)	76, 226, 920
MlsI	TGGCCA	1 cut(s)	263
MluCI	AATT	3 cut(s)	359, 765, 914
MluI	ACGCGT	1 cut(s)	53
MluNI	TGGCCA	1 cut(s)	263
Mly113I	GGCGCC	1 cut(s)	309
MlyI	GAGTC	2 cut(s)	93, 227
MmeI	TCCRAC	1 cut(s)	127
Mox20I	TGGCCA	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	263
MseI	TTAA	2 cut(s)	525, 735
Msp20I	TGGCCA	1 cut(s)	263
MspA1I	CMGCKG	4 cut(s)	247, 259, 506, 542
MspI	CCGG	3 cut(s)	71, 330, 690
MspR9I	CCNGG	1 cut(s)	690
MvnI	CGCG	7 cut(s)	55, 68, 89, 109, 129, 131, 506
MwoI	GCNNNNNNNGC	5 cut(s)	197, 253, 539, 548, 806
NarI	GGCGCC	1 cut(s)	309
NciI	CCSGG	1 cut(s)	690
NdeII	GATC	6 cut(s)	75, 114, 161, 442, 637, 786
NheI	GCTAGC	1 cut(s)	601
NlaIII	CATG	3 cut(s)	410, 449, 674
NlaIV	GGNNCC	5 cut(s)	310, 435, 482, 495, 660
NmeAIII	GCCGAG	1 cut(s)	120
NmuCI	GTSAC	1 cut(s)	724
NspI	RCATGY	2 cut(s)	410, 674
NspV	TTCGAA	1 cut(s)	947
PagI	TCATGA	1 cut(s)	445
PcsI	WCGNNNNNNNCGW	1 cut(s)	176
PfeI	GAWTC	4 cut(s)	133, 383, 499, 740
PkrI	GCNGC	4 cut(s)	246, 258, 553, 943
PleI	GAGTC	2 cut(s)	93, 227
PluTI	GGCGCC	1 cut(s)	312
PpsI	GAGTC	2 cut(s)	93, 227
PshBI	ATTAAT	1 cut(s)	525
PspEI	GGTNACC	2 cut(s)	586, 724
PspFI	CCCAGC	1 cut(s)	191
PspN4I	GGNNCC	5 cut(s)	310, 435, 482, 495, 660
PspPI	GGNCC	1 cut(s)	659
PvuII	CAGCTG	3 cut(s)	247, 259, 542
RsaI	GTAC	3 cut(s)	58, 269, 495
RsaNI	GTAC	3 cut(s)	57, 268, 494
SacII	CCGCGG	1 cut(s)	507
SaqAI	TTAA	2 cut(s)	525, 735
SatI	GCNGC	4 cut(s)	245, 257, 552, 942
Sau3AI	GATC	6 cut(s)	75, 114, 161, 442, 637, 786
Sau96I	GGNCC	1 cut(s)	659
SchI	GAGTC	2 cut(s)	93, 227
ScrFI	CCNGG	1 cut(s)	690
SfaNI	GCATC	1 cut(s)	520
SfcI	CTRYAG	1 cut(s)	953
SfoI	GGCGCC	1 cut(s)	310
Sfr303I	CCGCGG	1 cut(s)	507
SfuI	TTCGAA	1 cut(s)	947
SgrAI	CRCCGGYG	1 cut(s)	70
SgrBI	CCGCGG	1 cut(s)	507
SinI	GGWCC	1 cut(s)	659
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	3 cut(s)	359, 765, 914
SsiI	CCGC	8 cut(s)	107, 127, 200, 251, 273, 504, 506, 755
SspDI	GGCGCC	1 cut(s)	308
SspMI	CTAG	1 cut(s)	602
StyD4I	CCNGG	1 cut(s)	688
TaaI	ACNGT	2 cut(s)	319, 455
TaqI	TCGA	2 cut(s)	113, 947
TasI	AATT	3 cut(s)	359, 765, 914
TatI	WGTACW	1 cut(s)	267
TfiI	GAWTC	4 cut(s)	133, 383, 499, 740
Tru1I	TTAA	2 cut(s)	525, 735
Tru9I	TTAA	2 cut(s)	525, 735
TscAI	CASTG	1 cut(s)	789
TseFI	GTSAC	1 cut(s)	724
TseI	GCWGC	4 cut(s)	244, 256, 551, 941
Tsp45I	GTSAC	1 cut(s)	724
TspDTI	ATGAA	1 cut(s)	927
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	789
VpaK11BI	GGWCC	1 cut(s)	659
VspI	ATTAAT	1 cut(s)	525
XagI	CCTNNNNNAGG	1 cut(s)	488
XceI	RCATGY	2 cut(s)	410, 674
XspI	CTAG	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.