pycom07g26940

Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0012990
Physical Location & Seq
Reverse (-)
26796525 .. 26798165
1641 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g26940.3

Sequence Viewer

Length: 1005 bp
ATGACTTTCGGGACCCGGTCTGCCATGTTCCCAGCCAGTAAGCCCGGGTGCGCAGTGCGCATGGCCTCCATATGCTCCCCGACCCGTCTTTCCCTCTCACTCCGCACGACTCTCTCCTCATTGCGCACATCTCGCGCGCCGGGAATCTCACTGCGATCGTCACCAATATCTCTATCCCTCTCGATTAAACCCGTTCGCTTGAATTTCAAGAACCCAGTTTCCGCATCATCTGCGTCAGCAGAGATGGCGGGTCAGTGTCAGAAGAAGGTGGAGAAGTTTCAGACGGAGGAGGAAGTGGCAGTGCGTCTGGCGAAGTACACTGCCGACCTCTCGGCCAAGTTTGTGAAGGAGAGAGGAGCTTTCACCGTCGTTTTGTCCGGCGGCTCTCTCATTTACACGCTCAGGAAATTAGCGGAAGAGCCGTATAAGTATATGGTGGAATGGGAGAAATGGCATGTGTTCTGGGTGGATGAGAGAGTGGTGAAAAGAGATCACGCCGACAGTAACTATAAACTTGCTCTTGAAGGTTTACTCTGCAAGGTACCGATTCCTCCTGGCCAGGTTTACGCCATTAACGACGCACTTCCAGCCGAGGGAGCAGCTGAGGATTACGAAACCTGTCTTAAACATTTGGTTGAGCGCAATGTGATTGCCACTTCAAAAGCTACTGGATTTCCAAAGTTCGATCTCATGCTTCTGGGTATGGGGCCAGATGGACATCTTGCTTCTCTATTCCCTGGCCATCCGCTTTGCAACGAGAAGACGAAATGGGTGACTCACATTATGGACTCACCAAAACCACCTCCAGAGAGGATTACATTTACCTTCCCGGTGATCAACTCCGCTGCATATAATGCAATGGTGGTGACAGGTGATGATAAAGCTGATGCCGTGCAGAGAGCGCTAGGAAATAGTCAGCATCCTGATACTTTGCCTGTTCAGTCGCTTGCAGCCGAAGACGAGTTAACTTGGTTTTTAGACCAGGGTGCAGCTTCCAGGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map01100 map01110 map01120 map01130 map01200
Pfam Domains
Protein Families
Glucosamine_iso

Protein Analysis

335

Amino Acids

36.62

Weight (kDa)

8.63

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012990)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49360 AT5G24400
fragaria_vesca FvH4_7g32550
malus_domestica MD01G1226300.v1.1 MD07G1296700.v1.1
prunus_persica Prupe.2G316300_v2.0.a1
pyrus_communis pycom01g23480 pycom07g26940
rosa_chinensis RchiOBHm_Chr1g0382391
rosa_laevigata RLG00000026181
rosa_multiflora Rmu_sc0000110.1_g000044
rosa_roxburghii Rroxscaffold_4G00278140
rosa_rugosa Rorug01G0434000
rosa_samantha Rh1AG458700 Rh1BG415000 Rh1CG429100 Rh1DG447100
rosa_wichuraiana Rw1G041230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 3 cut(s) 52, 59, 125
Acc65I GGTACC 1 cut(s) 541
AccB1I GGYRCC 1 cut(s) 541
AccII CGCG 2 cut(s) 135, 137
AciI CCGC 7 cut(s) 103, 222, 248, 381, 413, 746, 843
AcoI YGGCCR 3 cut(s) 333, 556, 739
AcsI RAATTY 1 cut(s) 202
AfaI GTAC 2 cut(s) 317, 543
AfeI AGCGCT 1 cut(s) 903
AfiI CCNNNNNNNGG 1 cut(s) 593
AgsI TTSAA 4 cut(s) 202, 208, 524, 660
AjnI CCWGG 5 cut(s) 553, 558, 736, 981, 995
AloI GAACNNNNNNTCC 2 cut(s) 203, 235
AluBI AGCT 5 cut(s) 359, 602, 665, 884, 992
AluI AGCT 5 cut(s) 359, 602, 665, 884, 992
Ama87I CYCGRG 1 cut(s) 44
Aor51HI AGCGCT 1 cut(s) 903
AoxI GGCC 5 cut(s) 63, 333, 556, 707, 739
ApeKI GCWGC 4 cut(s) 599, 845, 950, 989
ApoI RAATTY 1 cut(s) 202
Asp718I GGTACC 1 cut(s) 541
AspLEI GCGC 7 cut(s) 53, 60, 126, 137, 139, 642, 904
AspS9I GGNCC 2 cut(s) 12, 707
AsuC2I CCSGG 5 cut(s) 16, 45, 46, 141, 830
AsuHPI GGTGA 8 cut(s) 153, 355, 493, 783, 784, 844, 877, 884
AvaI CYCGRG 1 cut(s) 44
AvaII GGWCC 1 cut(s) 12
BalI TGGCCA 2 cut(s) 558, 741
BanI GGYRCC 1 cut(s) 541
BbsI GAAGAC 2 cut(s) 767, 963
BbvCI CCTCAGC 1 cut(s) 603
BbvI GCAGC 4 cut(s) 611, 832, 962, 1001
BccI CCATC 3 cut(s) 238, 707, 750
BceAI ACGGC 2 cut(s) 406, 875
BciT130I CCWGG 5 cut(s) 555, 560, 738, 983, 997
BclI TGATCA 1 cut(s) 834
BcnI CCSGG 5 cut(s) 16, 45, 46, 141, 830
BfaI CTAG 1 cut(s) 905
BfmI CTRYAG 1 cut(s) 1001
BfoI RGCGCY 1 cut(s) 905
BisI GCNGC 5 cut(s) 382, 600, 846, 951, 990
BlsI GCNGC 5 cut(s) 383, 601, 847, 952, 991
Bme18I GGWCC 1 cut(s) 12
BmeT110I CYCGRG 1 cut(s) 44
BmgT120I GGNCC 2 cut(s) 12, 707
BmiI GGNNCC 4 cut(s) 13, 14, 543, 708
BmrI ACTGGG 1 cut(s) 209
BmsI GCATC 3 cut(s) 233, 877, 928
BmuI ACTGGG 1 cut(s) 209
BpiI GAAGAC 2 cut(s) 767, 963
BpmI CTGGAG 1 cut(s) 789
Bpu10I CCTNAGC 2 cut(s) 401, 603
BpuMI CCSGG 5 cut(s) 16, 45, 46, 141, 830
BsaBI GATNNNNATC 1 cut(s) 717
BsaJI CCNNGG 4 cut(s) 44, 591, 736, 982
Bsc4I CCNNNNNNNGG 1 cut(s) 593
Bse1I ACTGG 3 cut(s) 36, 215, 673
Bse3DI GCAATG 3 cut(s) 119, 649, 864
Bse8I GATNNNNATC 1 cut(s) 717
BseBI CCWGG 5 cut(s) 555, 560, 738, 983, 997
BseDI CCNNGG 4 cut(s) 44, 591, 736, 982
BseGI GGATG 3 cut(s) 475, 742, 919
BseJI GATNNNNATC 1 cut(s) 717
BseLI CCNNNNNNNGG 1 cut(s) 593
BseMI GCAATG 3 cut(s) 119, 649, 864
BseMII CTCAG 2 cut(s) 415, 594
BseNI ACTGG 3 cut(s) 36, 215, 673
BsePI GCGCGC 1 cut(s) 135
BseRI GAGGAG 3 cut(s) 106, 302, 369
BseXI GCAGC 4 cut(s) 611, 832, 962, 1001
BseYI CCCAGC 1 cut(s) 31
BsgI GTGCAG 1 cut(s) 914
Bsh1236I CGCG 2 cut(s) 135, 137
Bsh1285I CGRYCG 1 cut(s) 158
BshFI GGCC 5 cut(s) 65, 335, 558, 709, 741
BshNI GGYRCC 1 cut(s) 541
BsiEI CGRYCG 1 cut(s) 158
BsiHKCI CYCGRG 1 cut(s) 44
BsiSI CCGG 5 cut(s) 16, 45, 140, 378, 830
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 1 cut(s) 593
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 5 cut(s) 65, 335, 558, 709, 741
BsoBI CYCGRG 1 cut(s) 44
Bsp143I GATC 4 cut(s) 155, 490, 685, 834
BspACI CCGC 7 cut(s) 103, 222, 248, 381, 413, 746, 843
BspANI GGCC 5 cut(s) 65, 335, 558, 709, 741
BspCNI CTCAG 2 cut(s) 414, 595
BspFNI CGCG 2 cut(s) 135, 137
BspLI GGNNCC 4 cut(s) 13, 14, 543, 708
BspQI GCTCTTC 1 cut(s) 411
BspT107I GGYRCC 1 cut(s) 541
BsrDI GCAATG 3 cut(s) 119, 649, 864
BsrI ACTGG 3 cut(s) 36, 215, 673
BssECI CCNNGG 4 cut(s) 44, 591, 736, 982
BssHII GCGCGC 1 cut(s) 135
BssMI GATC 4 cut(s) 155, 490, 685, 834
Bst2UI CCWGG 5 cut(s) 555, 560, 738, 983, 997
Bst4CI ACNGT 2 cut(s) 367, 503
Bst6I CTCTTC 1 cut(s) 411
BstAPI GCANNNNNTGC 2 cut(s) 230, 854
BstC8I GCNNGC 2 cut(s) 137, 948
BstDEI CTNAG 2 cut(s) 401, 603
BstF5I GGATG 3 cut(s) 475, 742, 919
BstFNI CGCG 2 cut(s) 135, 137
BstH2I RGCGCY 1 cut(s) 905
BstHHI GCGC 7 cut(s) 53, 60, 126, 137, 139, 642, 904
BstKTI GATC 4 cut(s) 158, 493, 688, 837
BstMBI GATC 4 cut(s) 155, 490, 685, 834
BstMCI CGRYCG 1 cut(s) 158
BstMWI GCNNNNNNNGC 8 cut(s) 57, 132, 230, 245, 587, 596, 854, 901
BstNI CCWGG 5 cut(s) 555, 560, 738, 983, 997
BstNSI RCATGY 1 cut(s) 458
BstSFI CTRYAG 1 cut(s) 1001
BstUI CGCG 2 cut(s) 135, 137
BstV1I GCAGC 4 cut(s) 611, 832, 962, 1001
BstV2I GAAGAC 2 cut(s) 767, 963
BsuRI GGCC 5 cut(s) 65, 335, 558, 709, 741
BtsCI GGATG 3 cut(s) 475, 742, 919
BtsI GCAGTG 4 cut(s) 60, 149, 306, 318
BtsIMutI CAGTG 5 cut(s) 60, 149, 260, 306, 318
Cac8I GCNNGC 2 cut(s) 137, 948
CfoI GCGC 7 cut(s) 53, 60, 126, 137, 139, 642, 904
Cfr13I GGNCC 2 cut(s) 12, 707
Cfr9I CCCGGG 1 cut(s) 44
CseI GACGC 3 cut(s) 222, 293, 587
Csp6I GTAC 2 cut(s) 316, 542
CviAII CATG 4 cut(s) 25, 61, 455, 691
CviQI GTAC 2 cut(s) 316, 542
DdeI CTNAG 2 cut(s) 401, 603
DpnI GATC 4 cut(s) 157, 492, 687, 836
DpnII GATC 4 cut(s) 155, 490, 685, 834
EaeI YGGCCR 3 cut(s) 333, 556, 739
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
Eco47I GGWCC 1 cut(s) 12
Eco47III AGCGCT 1 cut(s) 903
Eco88I CYCGRG 1 cut(s) 44
EcoO109I RGGNCCY 1 cut(s) 12
EcoRII CCWGG 5 cut(s) 553, 558, 736, 981, 995
FaeI CATG 4 cut(s) 28, 64, 458, 694
FaqI GGGAC 1 cut(s) 25
FatI CATG 4 cut(s) 24, 60, 454, 690
FauI CCCGC 1 cut(s) 241
FauNDI CATATG 1 cut(s) 71
FbaI TGATCA 1 cut(s) 834
Fnu4HI GCNGC 5 cut(s) 382, 600, 846, 951, 990
FokI GGATG 3 cut(s) 482, 729, 906
Fsp4HI GCNGC 5 cut(s) 382, 600, 846, 951, 990
FspAI RTGCGCAY 1 cut(s) 59
FspBI CTAG 1 cut(s) 905
FspI TGCGCA 3 cut(s) 52, 59, 125
GlaI GCGC 7 cut(s) 52, 59, 125, 136, 138, 641, 903
GluI GCNGC 5 cut(s) 382, 600, 846, 951, 990
GsaI CCCAGC 1 cut(s) 35
GsuI CTGGAG 1 cut(s) 789
HaeII RGCGCY 1 cut(s) 905
HaeIII GGCC 5 cut(s) 65, 335, 558, 709, 741
HapII CCGG 5 cut(s) 16, 45, 140, 378, 830
HgaI GACGC 3 cut(s) 222, 293, 587
HhaI GCGC 7 cut(s) 53, 60, 126, 137, 139, 642, 904
Hin1II CATG 4 cut(s) 28, 64, 458, 694
Hin6I GCGC 7 cut(s) 51, 58, 124, 135, 137, 640, 902
HinP1I GCGC 7 cut(s) 51, 58, 124, 135, 137, 640, 902
HincII GTYRAC 1 cut(s) 966
HindII GTYRAC 1 cut(s) 966
HinfI GANTC 5 cut(s) 109, 144, 547, 775, 788
HpaI GTTAAC 1 cut(s) 966
HpaII CCGG 5 cut(s) 16, 45, 140, 378, 830
HphI GGTGA 8 cut(s) 153, 355, 493, 783, 784, 844, 877, 884
Hpy166II GTNNAC 4 cut(s) 318, 530, 565, 966
Hpy188I TCNGA 2 cut(s) 261, 282
Hpy188III TCNNGA 7 cut(s) 10, 181, 208, 403, 521, 806, 923
Hpy8I GTNNAC 4 cut(s) 318, 530, 565, 966
Hpy99I CGWCG 2 cut(s) 371, 581
HpyAV CCTTC 4 cut(s) 259, 340, 518, 835
HpyCH4III ACNGT 2 cut(s) 367, 503
HpyCH4V TGCA 7 cut(s) 537, 753, 848, 857, 895, 950, 989
HpyF10VI GCNNNNNNNGC 8 cut(s) 57, 132, 230, 245, 587, 596, 854, 901
HpyF3I CTNAG 2 cut(s) 401, 603
Hsp92II CATG 4 cut(s) 28, 64, 458, 694
HspAI GCGC 7 cut(s) 51, 58, 124, 135, 137, 640, 902
KflI GGGWCCC 1 cut(s) 12
KpnI GGTACC 1 cut(s) 545
Ksp22I TGATCA 1 cut(s) 834
KspAI GTTAAC 1 cut(s) 966
Kzo9I GATC 4 cut(s) 155, 490, 685, 834
LguI GCTCTTC 1 cut(s) 411
LmnI GCTCC 3 cut(s) 80, 356, 596
Lsp1109I GCAGC 4 cut(s) 611, 832, 962, 1001
LweI GCATC 3 cut(s) 233, 877, 928
MaeI CTAG 1 cut(s) 905
MaeIII GTNAC 4 cut(s) 159, 503, 772, 865
MalI GATC 4 cut(s) 157, 492, 687, 836
MboI GATC 4 cut(s) 155, 490, 685, 834
MboII GAAGA 4 cut(s) 274, 428, 772, 968
MlsI TGGCCA 2 cut(s) 558, 741
MluCI AATT 2 cut(s) 202, 407
MluNI TGGCCA 2 cut(s) 558, 741
MlyI GAGTC 3 cut(s) 103, 769, 782
Mox20I TGGCCA 2 cut(s) 558, 741
MscI TGGCCA 2 cut(s) 558, 741
MseI TTAA 4 cut(s) 186, 573, 624, 965
Msp20I TGGCCA 2 cut(s) 558, 741
MspA1I CMGCKG 2 cut(s) 602, 845
MspI CCGG 5 cut(s) 16, 45, 140, 378, 830
MvaI CCWGG 5 cut(s) 555, 560, 738, 983, 997
MvnI CGCG 2 cut(s) 135, 137
MwoI GCNNNNNNNGC 8 cut(s) 57, 132, 230, 245, 587, 596, 854, 901
NciI CCSGG 5 cut(s) 16, 45, 46, 141, 830
NdeI CATATG 1 cut(s) 71
NdeII GATC 4 cut(s) 155, 490, 685, 834
NlaIII CATG 4 cut(s) 28, 64, 458, 694
NlaIV GGNNCC 4 cut(s) 13, 14, 543, 708
NmeAIII GCCGAG 2 cut(s) 311, 616
NmuCI GTSAC 3 cut(s) 159, 772, 865
NsbI TGCGCA 3 cut(s) 52, 59, 125
NspI RCATGY 1 cut(s) 458
PauI GCGCGC 1 cut(s) 135
PciSI GCTCTTC 1 cut(s) 411
PcsI WCGNNNNNNNCGW 1 cut(s) 573
PfeI GAWTC 2 cut(s) 144, 547
PflFI GACNNNGTC 1 cut(s) 16
PkrI GCNGC 5 cut(s) 383, 601, 847, 952, 991
Ple19I CGATCG 1 cut(s) 158
PleI GAGTC 3 cut(s) 103, 769, 782
PpsI GAGTC 3 cut(s) 103, 769, 782
PpuMI RGGWCCY 1 cut(s) 12
Psp5II RGGWCCY 1 cut(s) 12
Psp6I CCWGG 5 cut(s) 553, 558, 736, 981, 995
PspFI CCCAGC 1 cut(s) 31
PspGI CCWGG 5 cut(s) 553, 558, 736, 981, 995
PspN4I GGNNCC 4 cut(s) 13, 14, 543, 708
PspPI GGNCC 2 cut(s) 12, 707
PspPPI RGGWCCY 1 cut(s) 12
PsyI GACNNNGTC 1 cut(s) 16
PteI GCGCGC 1 cut(s) 135
PvuI CGATCG 1 cut(s) 158
PvuII CAGCTG 1 cut(s) 602
RsaI GTAC 2 cut(s) 317, 543
RsaNI GTAC 2 cut(s) 316, 542
SapI GCTCTTC 1 cut(s) 411
SaqAI TTAA 4 cut(s) 186, 573, 624, 965
SatI GCNGC 5 cut(s) 382, 600, 846, 951, 990
Sau3AI GATC 4 cut(s) 155, 490, 685, 834
Sau96I GGNCC 2 cut(s) 12, 707
SchI GAGTC 3 cut(s) 103, 769, 782
SfaNI GCATC 3 cut(s) 233, 877, 928
SfcI CTRYAG 1 cut(s) 1001
SinI GGWCC 1 cut(s) 12
SmaI CCCGGG 1 cut(s) 46
Sse9I AATT 2 cut(s) 202, 407
SsiI CCGC 7 cut(s) 103, 222, 248, 381, 413, 746, 843
SspMI CTAG 1 cut(s) 905
TaaI ACNGT 2 cut(s) 367, 503
TaqI TCGA 2 cut(s) 182, 684
TasI AATT 2 cut(s) 202, 407
TatI WGTACW 1 cut(s) 315
TauI GCSGC 1 cut(s) 384
TfiI GAWTC 2 cut(s) 144, 547
Tru1I TTAA 4 cut(s) 186, 573, 624, 965
Tru9I TTAA 4 cut(s) 186, 573, 624, 965
TscAI CASTG 5 cut(s) 60, 156, 260, 306, 325
TseFI GTSAC 3 cut(s) 159, 772, 865
TseI GCWGC 4 cut(s) 599, 845, 950, 989
Tsp45I GTSAC 3 cut(s) 159, 772, 865
TspGWI ACGGA 1 cut(s) 299
TspMI CCCGGG 1 cut(s) 44
TspRI CASTG 5 cut(s) 60, 156, 260, 306, 325
Tth111I GACNNNGTC 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 12
XapI RAATTY 1 cut(s) 202
XceI RCATGY 1 cut(s) 458
XmaI CCCGGG 1 cut(s) 44
XspI CTAG 1 cut(s) 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.