Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0012990

Physical Location & Seq

Genomic Coordinates Reverse (-)

29679531 .. 29681904

Gene Structure 2374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G316300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCCTCCTCCATGTGCGCAACTACCCCTCTTTCTCTCTCATCGTCTCTCCGCACGAATCTCTCATCGTCGCGTACATCTCGCGCGCCGTTGATCTCACTCCGAGTGTCACCAATATTCCAAGCTCTCTCGTTTAAATCCGTTCGCACCAATTTCAAGAACCCAATTTCTGCATCGGCATCAGCATCAGCTAGGATGGCGGGTCAGAATAAGAAGATAGAGAAGTTTGAGACGGAGGAGGAAGTGGCGGTGCGTTTGGCCAAGTACACCGCAGATCTGTCCGCTAAGTTTGTGAAAGAGAGAGGGGCTTTCACCGTCGTTTTATCCGGCGGCTCTCTCATTGACGCGCTCAGGAAATTAGCGGAAGCACCGTATAAGGATTCGGTGGACTGGTCGAAATGGCATGTGTTCTGGGTGGATGAGAGAGTGGTGAAGAGGGATCACGTTGACAGTAACTACAAGCTTGCTCTTGATGGTTTCCTCAGTAAGGTACCAATTCCCCCGGGCCAGGTTTATGCCATTAATGATGCACTTTCAGCTGAGGGAGCAGCAGATGATTATGAGACCTGTCTTAAACATTTGGTTCAGCGGAATGTGATAGCCACTTCAAAAACTACTGGGTTTCCAAAGTTTGATCTCATGCTTCTGGGTATGGGCCCAGATGGACATCTTGCTTCTCTATTCCCCGGTCATCCTCTTGTCAACGAGAAGAACAAATGGGTCACTTGCATTAAGGACTCACCAAAACCACCTCCAGAGAGGATTACTTTCACCTTTCCAGTGATCAACTCTGCTGCATATAATGCAATGGTAGTGACCGGTGAGGGAAAAGCTAGTGCTGTCTGCACGGCACTTGGAAAAAGTCAGCATTCTGAAACTTTGCCTGCTCAGTTGCTTTCAGCTGAGGATGAGTTAACATGGTTTTTAGACAAGAGTGCAGCTTCAAACCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0006081 GO:0006082 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016787 GO:0016788 GO:0017057 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0031090 GO:0034641 GO:0042126 GO:0042128 GO:0042579 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0050896 GO:0051156 GO:0051186 GO:0051704 GO:0051707 GO:0051775 GO:0052689 GO:0055086 GO:0071461 GO:0071704 GO:0071941 GO:0072524 GO:0098542 GO:0098588 GO:0098805 GO:1901135 GO:1901360 GO:1901564 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Glucosamine_iso

Protein Analysis

318

Amino Acids

34.46

Weight (kDa)

8.9

Isoelectric Point (pI)

30.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49360 AT5G24400
fragaria_vesca	FvH4_7g32550
malus_domestica	MD01G1226300.v1.1 MD07G1296700.v1.1
prunus_persica	Prupe.2G316300_v2.0.a1
pyrus_communis	pycom01g23480 pycom07g26940
rosa_chinensis	RchiOBHm_Chr1g0382391
rosa_laevigata	RLG00000026181
rosa_multiflora	Rmu_sc0000110.1_g000044
rosa_roxburghii	Rroxscaffold_4G00278140
rosa_rugosa	Rorug01G0434000
rosa_samantha	Rh1AG458700 Rh1BG415000 Rh1CG429100 Rh1DG447100
rosa_wichuraiana	Rw1G041230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	19
Acc65I	GGTACC	1 cut(s)	490
AccB1I	GGYRCC	1 cut(s)	490
AccII	CGCG	4 cut(s)	73, 84, 86, 347
AciI	CCGC	8 cut(s)	52, 200, 248, 270, 282, 330, 362, 589
AclWI	GGATC	1 cut(s)	447
AcoI	YGGCCR	1 cut(s)	258
AfaI	GTAC	3 cut(s)	76, 266, 492
AfiI	CCNNNNNNNGG	2 cut(s)	487, 508
AgeI	ACCGGT	1 cut(s)	818
AgsI	TTSAA	3 cut(s)	157, 609, 945
AjnI	CCWGG	1 cut(s)	507
AluBI	AGCT	7 cut(s)	125, 191, 463, 539, 833, 902, 941
AluI	AGCT	7 cut(s)	125, 191, 463, 539, 833, 902, 941
Alw26I	GTCTC	3 cut(s)	51, 224, 557
AlwI	GGATC	1 cut(s)	447
Ama87I	CYCGRG	1 cut(s)	502
AoxI	GGCC	4 cut(s)	3, 258, 505, 655
ApaI	GGGCCC	1 cut(s)	659
ApeKI	GCWGC	3 cut(s)	548, 794, 938
AseI	ATTAAT	1 cut(s)	522
AsiGI	ACCGGT	1 cut(s)	818
Asp718I	GGTACC	1 cut(s)	490
AspLEI	GCGC	4 cut(s)	20, 86, 88, 349
AspS9I	GGNCC	3 cut(s)	505, 655, 656
AsuC2I	CCSGG	3 cut(s)	503, 504, 687
AsuHPI	GGTGA	6 cut(s)	102, 304, 442, 732, 763, 833
AvaI	CYCGRG	1 cut(s)	502
BaeGI	GKGCMC	1 cut(s)	659
BalI	TGGCCA	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	490
BanII	GRGCYC	1 cut(s)	659
BbvCI	CCTCAGC	2 cut(s)	540, 903
BbvI	GCAGC	3 cut(s)	560, 781, 950
BccI	CCATC	3 cut(s)	190, 467, 656
BceAI	ACGGC	2 cut(s)	73, 864
BciT130I	CCWGG	1 cut(s)	509
BclI	TGATCA	1 cut(s)	783
BcnI	CCSGG	3 cut(s)	503, 504, 687
BcoDI	GTCTC	3 cut(s)	51, 224, 557
BfaI	CTAG	2 cut(s)	192, 834
BfmI	CTRYAG	1 cut(s)	950
BglII	AGATCT	1 cut(s)	274
BisI	GCNGC	4 cut(s)	331, 549, 795, 939
BlsI	GCNGC	4 cut(s)	332, 550, 796, 940
Bme1390I	CCNGG	4 cut(s)	503, 504, 509, 687
BmeT110I	CYCGRG	1 cut(s)	502
BmgT120I	GGNCC	3 cut(s)	505, 655, 656
BmiI	GGNNCC	2 cut(s)	492, 657
BmrFI	CCNGG	4 cut(s)	503, 504, 509, 687
BmrI	ACTGGG	1 cut(s)	627
BmsI	GCATC	4 cut(s)	182, 188, 194, 517
BmuI	ACTGGG	1 cut(s)	627
BpmI	CTGGAG	1 cut(s)	738
Bpu10I	CCTNAGC	3 cut(s)	350, 540, 903
BpuMI	CCSGG	3 cut(s)	503, 504, 687
BsaBI	GATNNNNATC	1 cut(s)	666
BsaI	GGTCTC	1 cut(s)	557
BsaJI	CCNNGG	3 cut(s)	501, 502, 685
BsaWI	WCCGGW	1 cut(s)	818
Bsc4I	CCNNNNNNNGG	2 cut(s)	487, 508
Bse118I	RCCGGY	1 cut(s)	818
Bse1I	ACTGG	3 cut(s)	395, 622, 779
Bse3DI	GCAATG	1 cut(s)	813
Bse8I	GATNNNNATC	1 cut(s)	666
BseBI	CCWGG	1 cut(s)	509
BseDI	CCNNGG	3 cut(s)	501, 502, 685
BseGI	GGATG	4 cut(s)	201, 424, 691, 913
BseJI	GATNNNNATC	1 cut(s)	666
BseLI	CCNNNNNNNGG	2 cut(s)	487, 508
BseMI	GCAATG	1 cut(s)	813
BseMII	CTCAG	5 cut(s)	364, 496, 531, 894, 902
BseNI	ACTGG	3 cut(s)	395, 622, 779
BsePI	GCGCGC	1 cut(s)	84
BseRI	GAGGAG	1 cut(s)	251
BseSI	GKGCMC	1 cut(s)	659
BseXI	GCAGC	3 cut(s)	560, 781, 950
BsgI	GTGCAG	1 cut(s)	829
Bsh1236I	CGCG	4 cut(s)	73, 84, 86, 347
BshFI	GGCC	4 cut(s)	5, 260, 507, 657
BshNI	GGYRCC	1 cut(s)	490
BshTI	ACCGGT	1 cut(s)	818
BsiHKCI	CYCGRG	1 cut(s)	502
BsiSI	CCGG	4 cut(s)	327, 503, 687, 819
BslI	CCNNNNNNNGG	2 cut(s)	487, 508
BsmAI	GTCTC	3 cut(s)	51, 224, 557
BsmBI	CGTCTC	2 cut(s)	51, 224
BsmI	GAATGC	1 cut(s)	868
BsnI	GGCC	4 cut(s)	5, 260, 507, 657
Bso31I	GGTCTC	1 cut(s)	557
BsoBI	CYCGRG	1 cut(s)	502
Bsp120I	GGGCCC	1 cut(s)	655
Bsp1286I	GDGCHC	1 cut(s)	659
Bsp143I	GATC	5 cut(s)	93, 274, 439, 634, 783
BspACI	CCGC	8 cut(s)	52, 200, 248, 270, 282, 330, 362, 589
BspANI	GGCC	4 cut(s)	5, 260, 507, 657
BspCNI	CTCAG	5 cut(s)	363, 495, 532, 895, 901
BspFNI	CGCG	4 cut(s)	73, 84, 86, 347
BspLI	GGNNCC	2 cut(s)	492, 657
BspPI	GGATC	1 cut(s)	447
BspT107I	GGYRCC	1 cut(s)	490
BspTNI	GGTCTC	1 cut(s)	557
BsrDI	GCAATG	1 cut(s)	813
BsrFI	RCCGGY	1 cut(s)	818
BsrI	ACTGG	3 cut(s)	395, 622, 779
BssAI	RCCGGY	1 cut(s)	818
BssECI	CCNNGG	3 cut(s)	501, 502, 685
BssHII	GCGCGC	1 cut(s)	84
BssMI	GATC	5 cut(s)	93, 274, 439, 634, 783
Bst2UI	CCWGG	1 cut(s)	509
Bst4CI	ACNGT	3 cut(s)	316, 372, 452
Bst6I	CTCTTC	1 cut(s)	428
BstAPI	GCANNNNNTGC	1 cut(s)	803
BstC8I	GCNNGC	3 cut(s)	86, 465, 885
BstDEI	CTNAG	6 cut(s)	285, 350, 482, 540, 888, 903
BstENI	CCTNNNNNAGG	1 cut(s)	485
BstF5I	GGATG	4 cut(s)	201, 424, 691, 913
BstFNI	CGCG	4 cut(s)	73, 84, 86, 347
BstHHI	GCGC	4 cut(s)	20, 86, 88, 349
BstKTI	GATC	5 cut(s)	96, 277, 442, 637, 786
BstMAI	GTCTC	3 cut(s)	51, 224, 557
BstMBI	GATC	5 cut(s)	93, 274, 439, 634, 783
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 536, 545, 803
BstNI	CCWGG	1 cut(s)	509
BstNSI	RCATGY	1 cut(s)	407
BstSCI	CCNGG	4 cut(s)	501, 502, 507, 685
BstSFI	CTRYAG	1 cut(s)	950
BstSLI	GKGCMC	1 cut(s)	659
BstUI	CGCG	4 cut(s)	73, 84, 86, 347
BstV1I	GCAGC	3 cut(s)	560, 781, 950
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
BsuRI	GGCC	4 cut(s)	5, 260, 507, 657
BtsCI	GGATG	4 cut(s)	201, 424, 691, 913
BtsIMutI	CAGTG	1 cut(s)	786
Cac8I	GCNNGC	3 cut(s)	86, 465, 885
CfoI	GCGC	4 cut(s)	20, 86, 88, 349
Cfr10I	RCCGGY	1 cut(s)	818
Cfr13I	GGNCC	3 cut(s)	505, 655, 656
Cfr9I	CCCGGG	1 cut(s)	502
CseI	GACGC	1 cut(s)	353
Csp6I	GTAC	3 cut(s)	75, 265, 491
CspAI	ACCGGT	1 cut(s)	818
CviAII	CATG	4 cut(s)	13, 404, 640, 918
CviQI	GTAC	3 cut(s)	75, 265, 491
DdeI	CTNAG	6 cut(s)	285, 350, 482, 540, 888, 903
DpnI	GATC	5 cut(s)	95, 276, 441, 636, 785
DpnII	GATC	5 cut(s)	93, 274, 439, 634, 783
DraI	TTTAAA	1 cut(s)	136
EaeI	YGGCCR	1 cut(s)	258
Eam1104I	CTCTTC	1 cut(s)	428
EarI	CTCTTC	1 cut(s)	428
Eco24I	GRGCYC	1 cut(s)	659
Eco31I	GGTCTC	1 cut(s)	557
Eco88I	CYCGRG	1 cut(s)	502
EcoNI	CCTNNNNNAGG	1 cut(s)	485
EcoRII	CCWGG	1 cut(s)	507
EcoT38I	GRGCYC	1 cut(s)	659
Esp3I	CGTCTC	2 cut(s)	51, 224
FaeI	CATG	4 cut(s)	16, 407, 643, 921
FatI	CATG	4 cut(s)	12, 403, 639, 917
FauI	CCCGC	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	783
Fnu4HI	GCNGC	4 cut(s)	331, 549, 795, 939
FokI	GGATG	4 cut(s)	208, 431, 678, 920
FriOI	GRGCYC	1 cut(s)	659
Fsp4HI	GCNGC	4 cut(s)	331, 549, 795, 939
FspBI	CTAG	2 cut(s)	192, 834
FspI	TGCGCA	1 cut(s)	19
GlaI	GCGC	4 cut(s)	19, 85, 87, 348
GluI	GCNGC	4 cut(s)	331, 549, 795, 939
GsuI	CTGGAG	1 cut(s)	738
HaeIII	GGCC	4 cut(s)	5, 260, 507, 657
HapII	CCGG	4 cut(s)	327, 503, 687, 819
HgaI	GACGC	1 cut(s)	353
HhaI	GCGC	4 cut(s)	20, 86, 88, 349
Hin1II	CATG	4 cut(s)	16, 407, 643, 921
Hin6I	GCGC	4 cut(s)	18, 84, 86, 347
HinP1I	GCGC	4 cut(s)	18, 84, 86, 347
HincII	GTYRAC	3 cut(s)	448, 703, 915
HindII	GTYRAC	3 cut(s)	448, 703, 915
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	3 cut(s)	58, 380, 737
HpaI	GTTAAC	1 cut(s)	915
HpaII	CCGG	4 cut(s)	327, 503, 687, 819
HphI	GGTGA	6 cut(s)	102, 304, 442, 732, 763, 833
Hpy166II	GTNNAC	5 cut(s)	267, 388, 448, 703, 915
Hpy188I	TCNGA	3 cut(s)	104, 207, 874
Hpy188III	TCNNGA	4 cut(s)	157, 352, 470, 755
Hpy8I	GTNNAC	5 cut(s)	267, 388, 448, 703, 915
Hpy99I	CGWCG	2 cut(s)	73, 320
HpyCH4III	ACNGT	3 cut(s)	316, 372, 452
HpyCH4IV	ACGT	1 cut(s)	444
HpyCH4V	TGCA	7 cut(s)	173, 530, 729, 797, 806, 846, 938
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 536, 545, 803
HpyF3I	CTNAG	6 cut(s)	285, 350, 482, 540, 888, 903
HpySE526I	ACGT	1 cut(s)	444
Hsp92II	CATG	4 cut(s)	16, 407, 643, 921
HspAI	GCGC	4 cut(s)	18, 84, 86, 347
KpnI	GGTACC	1 cut(s)	494
Ksp22I	TGATCA	1 cut(s)	783
KspAI	GTTAAC	1 cut(s)	915
Kzo9I	GATC	5 cut(s)	93, 274, 439, 634, 783
LmnI	GCTCC	1 cut(s)	545
Lsp1109I	GCAGC	3 cut(s)	560, 781, 950
LweI	GCATC	4 cut(s)	182, 188, 194, 517
MaeI	CTAG	2 cut(s)	192, 834
MaeII	ACGT	1 cut(s)	444
MaeIII	GTNAC	4 cut(s)	108, 452, 721, 814
MalI	GATC	5 cut(s)	95, 276, 441, 636, 785
MboI	GATC	5 cut(s)	93, 274, 439, 634, 783
MboII	GAAGA	3 cut(s)	226, 445, 721
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	659
MlsI	TGGCCA	1 cut(s)	260
MluCI	AATT	4 cut(s)	151, 165, 356, 495
MluNI	TGGCCA	1 cut(s)	260
MlyI	GAGTC	1 cut(s)	731
Mox20I	TGGCCA	1 cut(s)	260
MscI	TGGCCA	1 cut(s)	260
MseI	TTAA	5 cut(s)	135, 522, 573, 732, 914
Msp20I	TGGCCA	1 cut(s)	260
MspA1I	CMGCKG	3 cut(s)	539, 589, 902
MspI	CCGG	4 cut(s)	327, 503, 687, 819
MspR9I	CCNGG	4 cut(s)	503, 504, 509, 687
Mva1269I	GAATGC	1 cut(s)	868
MvaI	CCWGG	1 cut(s)	509
MvnI	CGCG	4 cut(s)	73, 84, 86, 347
MwoI	GCNNNNNNNGC	4 cut(s)	197, 536, 545, 803
NciI	CCSGG	3 cut(s)	503, 504, 687
NdeII	GATC	5 cut(s)	93, 274, 439, 634, 783
NlaIII	CATG	4 cut(s)	16, 407, 643, 921
NlaIV	GGNNCC	2 cut(s)	492, 657
NmuCI	GTSAC	3 cut(s)	108, 721, 814
NsbI	TGCGCA	1 cut(s)	19
NspI	RCATGY	1 cut(s)	407
PauI	GCGCGC	1 cut(s)	84
PctI	GAATGC	1 cut(s)	868
PfeI	GAWTC	2 cut(s)	58, 380
PinAI	ACCGGT	1 cut(s)	818
PkrI	GCNGC	4 cut(s)	332, 550, 796, 940
PleI	GAGTC	1 cut(s)	731
PpsI	GAGTC	1 cut(s)	731
PshBI	ATTAAT	1 cut(s)	522
Psp6I	CCWGG	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	507
PspN4I	GGNNCC	2 cut(s)	492, 657
PspOMI	GGGCCC	1 cut(s)	655
PspPI	GGNCC	3 cut(s)	505, 655, 656
PsuI	RGATCY	1 cut(s)	274
PteI	GCGCGC	1 cut(s)	84
PvuII	CAGCTG	2 cut(s)	539, 902
RsaI	GTAC	3 cut(s)	76, 266, 492
RsaNI	GTAC	3 cut(s)	75, 265, 491
SaqAI	TTAA	5 cut(s)	135, 522, 573, 732, 914
SatI	GCNGC	4 cut(s)	331, 549, 795, 939
Sau3AI	GATC	5 cut(s)	93, 274, 439, 634, 783
Sau96I	GGNCC	3 cut(s)	505, 655, 656
SchI	GAGTC	1 cut(s)	731
ScrFI	CCNGG	4 cut(s)	503, 504, 509, 687
SduI	GDGCHC	1 cut(s)	659
SfaNI	GCATC	4 cut(s)	182, 188, 194, 517
SfcI	CTRYAG	1 cut(s)	950
SmaI	CCCGGG	1 cut(s)	504
Sse9I	AATT	4 cut(s)	151, 165, 356, 495
SsiI	CCGC	8 cut(s)	52, 200, 248, 270, 282, 330, 362, 589
SspI	AATATT	1 cut(s)	117
SspMI	CTAG	2 cut(s)	192, 834
StyD4I	CCNGG	4 cut(s)	501, 502, 507, 685
TaaI	ACNGT	3 cut(s)	316, 372, 452
TaiI	ACGT	1 cut(s)	447
TaqI	TCGA	1 cut(s)	395
TasI	AATT	4 cut(s)	151, 165, 356, 495
TatI	WGTACW	1 cut(s)	264
TauI	GCSGC	1 cut(s)	333
TfiI	GAWTC	2 cut(s)	58, 380
Tru1I	TTAA	5 cut(s)	135, 522, 573, 732, 914
Tru9I	TTAA	5 cut(s)	135, 522, 573, 732, 914
TscAI	CASTG	1 cut(s)	786
TseFI	GTSAC	3 cut(s)	108, 721, 814
TseI	GCWGC	3 cut(s)	548, 794, 938
Tsp45I	GTSAC	3 cut(s)	108, 721, 814
TspGWI	ACGGA	2 cut(s)	130, 248
TspMI	CCCGGG	1 cut(s)	502
TspRI	CASTG	1 cut(s)	786
VspI	ATTAAT	1 cut(s)	522
XagI	CCTNNNNNAGG	1 cut(s)	485
XceI	RCATGY	1 cut(s)	407
XmaI	CCCGGG	1 cut(s)	502
XspI	CTAG	2 cut(s)	192, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.