Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012990

Physical Location & Seq

Genomic Coordinates Forward (+)

53252058 .. 53252988

Gene Structure 931 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0434000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGCAACAGGATCTGATCATGATGCGGGGTAGTCATGAGGTTTTGCCATCTGATCTGCAGGGACGTAGTCTATCCAATATTAATATTAGTGAAGCAAATATTAACAATATGGCTACTGATTCTGGCGAAAGGAAGATCTTGCGTAGGGACAACGAGCGCCAAAGAAGACAAGTTATGGCGATTCGCACTGCATCACTTCGATCCCTCCTCCCTCTTGAATTAATCAAGGGAAAACGTTCAATCTCCGAGCACATAAATGAAGCAGTGAATTATATAAAGCAGCTGAAGGAAAAGATACAGGAGCTGAATGCCAAGAGGGAAGAGCTTAGAAGGGTGTATAAACATTATAGTAGTTCTGCACATGATTTCAGTCCTGAAATTAATGAAAATTTGGGTACTAAGAGTACTTCCAATATCATGGTTGGCCCAACATGTTGGGGTGGAGTGGAGATTGTGGTAAGTACTAATGGTACAAATTGCAGTGAGCTAGAAGGATTTTCTCTTTCAGGAGTACTCAAAGCATTGCTTGCAGAGGGCCTTACCGTTGTGGAGTGTGCTTCCACCACAGCAAATCAGAGGTTGTTTCACTCTATTCAGTGTGAGGTCGACGATTTGGCATGTCTGGATTTGTCTGAGCTACAACTGAAACTAAATTTTTTATGCAATTCTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0006081 GO:0006082 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016787 GO:0016788 GO:0017057 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0031090 GO:0034641 GO:0042126 GO:0042128 GO:0042579 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0050896 GO:0051156 GO:0051186 GO:0051704 GO:0051707 GO:0051775 GO:0052689 GO:0055086 GO:0071461 GO:0071704 GO:0071941 GO:0072524 GO:0098542 GO:0098588 GO:0098805 GO:1901135 GO:1901360 GO:1901564 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Glucosamine_iso

Protein Analysis

224

Amino Acids

24.99

Weight (kDa)

6.24

Isoelectric Point (pI)

58.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	45 - 96	7.2e-07	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0012990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49360 AT5G24400
fragaria_vesca	FvH4_7g32550
malus_domestica	MD01G1226300.v1.1 MD07G1296700.v1.1
prunus_persica	Prupe.2G316300_v2.0.a1
pyrus_communis	pycom01g23480 pycom07g26940
rosa_chinensis	RchiOBHm_Chr1g0382391
rosa_laevigata	RLG00000026181
rosa_multiflora	Rmu_sc0000110.1_g000044
rosa_roxburghii	Rroxscaffold_4G00278140
rosa_rugosa	Rorug01G0434000
rosa_samantha	Rh1AG458700 Rh1BG415000 Rh1CG429100 Rh1DG447100
rosa_wichuraiana	Rw1G041230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	606
AciI	CCGC	1 cut(s)	25
AclI	AACGTT	1 cut(s)	235
AclWI	GGATC	2 cut(s)	18, 195
AcsI	RAATTY	2 cut(s)	388, 652
AcuI	CTGAAG	1 cut(s)	305
AfaI	GTAC	5 cut(s)	397, 406, 463, 472, 513
AflIII	ACRYGT	1 cut(s)	431
AgsI	TTSAA	2 cut(s)	218, 240
AluBI	AGCT	5 cut(s)	283, 304, 325, 487, 637
AluI	AGCT	5 cut(s)	283, 304, 325, 487, 637
Alw21I	GWGCWC	1 cut(s)	252
AlwI	GGATC	2 cut(s)	18, 195
AlwNI	CAGNNNCTG	2 cut(s)	13, 304
AoxI	GGCC	2 cut(s)	424, 535
ApeKI	GCWGC	1 cut(s)	280
ApoI	RAATTY	2 cut(s)	388, 652
AseI	ATTAAT	3 cut(s)	81, 221, 381
Asp700I	GAANNNNTTC	1 cut(s)	235
AspLEI	GCGC	1 cut(s)	159
AspS9I	GGNCC	2 cut(s)	425, 535
BbsI	GAAGAC	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	1 cut(s)	55
BclI	TGATCA	1 cut(s)	15
BfaI	CTAG	2 cut(s)	488, 673
BfmI	CTRYAG	1 cut(s)	56
BfoI	RGCGCY	1 cut(s)	160
BglII	AGATCT	1 cut(s)	135
BisI	GCNGC	1 cut(s)	281
BlsI	GCNGC	1 cut(s)	282
BmcAI	AGTACT	3 cut(s)	406, 463, 513
BmgT120I	GGNCC	2 cut(s)	425, 535
BmsI	GCATC	2 cut(s)	12, 200
BpiI	GAAGAC	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	521
BseMI	GCAATG	1 cut(s)	521
BseMII	CTCAG	1 cut(s)	624
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	292
BsgI	GTGCAG	1 cut(s)	342
BshFI	GGCC	2 cut(s)	426, 537
BsiHKAI	GWGCWC	1 cut(s)	252
BslFI	GGGAC	2 cut(s)	75, 161
BsmFI	GGGAC	2 cut(s)	75, 161
BsmI	GAATGC	1 cut(s)	313
BsnI	GGCC	2 cut(s)	426, 537
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	5 cut(s)	10, 15, 52, 135, 200
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	2 cut(s)	426, 537
BspCNI	CTCAG	1 cut(s)	625
BspHI	TCATGA	2 cut(s)	18, 34
BspMAI	CTGCAG	1 cut(s)	60
BspPI	GGATC	2 cut(s)	18, 195
BspQI	GCTCTTC	1 cut(s)	315
BsrDI	GCAATG	1 cut(s)	521
BssMI	GATC	5 cut(s)	10, 15, 52, 135, 200
Bst4CI	ACNGT	1 cut(s)	544
Bst6I	CTCTTC	1 cut(s)	315
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstC8I	GCNNGC	1 cut(s)	528
BstDEI	CTNAG	3 cut(s)	326, 399, 633
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	5 cut(s)	13, 18, 55, 138, 203
BstMBI	GATC	5 cut(s)	10, 15, 52, 135, 200
BstMWI	GCNNNNNNNGC	2 cut(s)	527, 669
BstNSI	RCATGY	2 cut(s)	435, 621
BstSFI	CTRYAG	1 cut(s)	56
BstV1I	GCAGC	1 cut(s)	292
BstV2I	GAAGAC	1 cut(s)	172
BstX2I	RGATCY	2 cut(s)	10, 135
BstXI	CCANNNNNNTGG	2 cut(s)	418, 435
BstYI	RGATCY	2 cut(s)	10, 135
BsuRI	GGCC	2 cut(s)	426, 537
BtsI	GCAGTG	3 cut(s)	186, 270, 487
BtsIMutI	CAGTG	4 cut(s)	186, 270, 487, 602
Cac8I	GCNNGC	1 cut(s)	528
CaiI	CAGNNNCTG	2 cut(s)	13, 304
CciI	TCATGA	2 cut(s)	18, 34
CfoI	GCGC	1 cut(s)	159
Cfr13I	GGNCC	2 cut(s)	425, 535
Csp6I	GTAC	5 cut(s)	396, 405, 462, 471, 512
CviAII	CATG	6 cut(s)	19, 35, 362, 418, 432, 618
CviJI	RGCY	9 cut(s)	113, 283, 304, 325, 426, 487, 537, 637, 672
CviKI_1	RGCY	9 cut(s)	113, 283, 304, 325, 426, 487, 537, 637, 672
CviQI	GTAC	5 cut(s)	396, 405, 462, 471, 512
DdeI	CTNAG	3 cut(s)	326, 399, 633
DpnI	GATC	5 cut(s)	12, 17, 54, 137, 202
DpnII	GATC	5 cut(s)	10, 15, 52, 135, 200
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	305
EcoO109I	RGGNCCY	1 cut(s)	535
FaeI	CATG	6 cut(s)	22, 38, 365, 421, 435, 621
FalI	AAGNNNNNCTT	2 cut(s)	510, 542
FaqI	GGGAC	2 cut(s)	75, 161
FatI	CATG	6 cut(s)	18, 34, 361, 417, 431, 617
FauI	CCCGC	1 cut(s)	18
FbaI	TGATCA	1 cut(s)	15
FblI	GTMKAC	1 cut(s)	606
Fnu4HI	GCNGC	1 cut(s)	281
Fsp4HI	GCNGC	1 cut(s)	281
FspBI	CTAG	2 cut(s)	488, 673
GlaI	GCGC	1 cut(s)	158
GluI	GCNGC	1 cut(s)	281
HaeII	RGCGCY	1 cut(s)	160
HaeIII	GGCC	2 cut(s)	426, 537
HhaI	GCGC	1 cut(s)	159
Hin1II	CATG	6 cut(s)	22, 38, 365, 421, 435, 621
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HincII	GTYRAC	1 cut(s)	607
HindII	GTYRAC	1 cut(s)	607
HinfI	GANTC	2 cut(s)	119, 181
Hpy166II	GTNNAC	1 cut(s)	607
Hpy188I	TCNGA	5 cut(s)	15, 52, 247, 576, 634
Hpy188III	TCNNGA	6 cut(s)	19, 35, 215, 374, 507, 623
Hpy8I	GTNNAC	1 cut(s)	607
Hpy99I	CGWCG	1 cut(s)	611
HpyAV	CCTTC	3 cut(s)	280, 324, 485
HpyCH4III	ACNGT	1 cut(s)	544
HpyCH4IV	ACGT	2 cut(s)	64, 235
HpyCH4V	TGCA	7 cut(s)	4, 58, 191, 359, 480, 530, 663
HpyF10VI	GCNNNNNNNGC	2 cut(s)	527, 669
HpyF3I	CTNAG	3 cut(s)	326, 399, 633
HpySE526I	ACGT	2 cut(s)	64, 235
Hsp92II	CATG	6 cut(s)	22, 38, 365, 421, 435, 621
HspAI	GCGC	1 cut(s)	157
Ksp22I	TGATCA	1 cut(s)	15
Kzo9I	GATC	5 cut(s)	10, 15, 52, 135, 200
LguI	GCTCTTC	1 cut(s)	315
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	7 cut(s)	44, 108, 284, 387, 492, 608, 654
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	2 cut(s)	12, 200
MaeI	CTAG	2 cut(s)	488, 673
MaeII	ACGT	2 cut(s)	64, 235
MalI	GATC	5 cut(s)	12, 17, 54, 137, 202
MboI	GATC	5 cut(s)	10, 15, 52, 135, 200
MboII	GAAGA	3 cut(s)	145, 177, 332
MflI	RGATCY	2 cut(s)	10, 135
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	7 cut(s)	218, 268, 378, 388, 475, 652, 664
MnlI	CCTC	8 cut(s)	31, 215, 218, 222, 309, 526, 570, 595
MroXI	GAANNNNTTC	1 cut(s)	235
MseI	TTAA	4 cut(s)	81, 102, 221, 381
MslI	CAYNNNNRTG	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	283
Mva1269I	GAATGC	1 cut(s)	313
MwoI	GCNNNNNNNGC	2 cut(s)	527, 669
NdeII	GATC	5 cut(s)	10, 15, 52, 135, 200
NlaIII	CATG	6 cut(s)	22, 38, 365, 421, 435, 621
NspI	RCATGY	2 cut(s)	435, 621
PagI	TCATGA	2 cut(s)	18, 34
PciI	ACATGT	1 cut(s)	431
PciSI	GCTCTTC	1 cut(s)	315
PctI	GAATGC	1 cut(s)	313
PdmI	GAANNNNTTC	1 cut(s)	235
PfeI	GAWTC	2 cut(s)	119, 181
PflFI	GACNNNGTC	1 cut(s)	66
PkrI	GCNGC	1 cut(s)	282
PscI	ACATGT	1 cut(s)	431
PshBI	ATTAAT	3 cut(s)	81, 221, 381
Psp1406I	AACGTT	1 cut(s)	235
PspPI	GGNCC	2 cut(s)	425, 535
PstI	CTGCAG	1 cut(s)	60
PstNI	CAGNNNCTG	2 cut(s)	13, 304
PsuI	RGATCY	2 cut(s)	10, 135
PsyI	GACNNNGTC	1 cut(s)	66
PvuII	CAGCTG	1 cut(s)	283
RsaI	GTAC	5 cut(s)	397, 406, 463, 472, 513
RsaNI	GTAC	5 cut(s)	396, 405, 462, 471, 512
RseI	CAYNNNNRTG	1 cut(s)	255
SalI	GTCGAC	1 cut(s)	605
SapI	GCTCTTC	1 cut(s)	315
SaqAI	TTAA	4 cut(s)	81, 102, 221, 381
SatI	GCNGC	1 cut(s)	281
Sau3AI	GATC	5 cut(s)	10, 15, 52, 135, 200
Sau96I	GGNCC	2 cut(s)	425, 535
ScaI	AGTACT	3 cut(s)	406, 463, 513
SduI	GDGCHC	1 cut(s)	252
SfaNI	GCATC	2 cut(s)	12, 200
SfcI	CTRYAG	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	255
Sse9I	AATT	7 cut(s)	218, 268, 378, 388, 475, 652, 664
SsiI	CCGC	1 cut(s)	25
SspI	AATATT	3 cut(s)	79, 85, 100
SspMI	CTAG	2 cut(s)	488, 673
TaaI	ACNGT	1 cut(s)	544
TaiI	ACGT	2 cut(s)	67, 238
TaqI	TCGA	2 cut(s)	199, 606
TasI	AATT	7 cut(s)	218, 268, 378, 388, 475, 652, 664
TatI	WGTACW	3 cut(s)	404, 461, 511
TfiI	GAWTC	2 cut(s)	119, 181
Tru1I	TTAA	4 cut(s)	81, 102, 221, 381
Tru9I	TTAA	4 cut(s)	81, 102, 221, 381
TscAI	CASTG	4 cut(s)	193, 270, 487, 602
TseI	GCWGC	1 cut(s)	280
TspDTI	ATGAA	2 cut(s)	273, 399
TspRI	CASTG	4 cut(s)	193, 270, 487, 602
Tth111I	GACNNNGTC	1 cut(s)	66
VspI	ATTAAT	3 cut(s)	81, 221, 381
XapI	RAATTY	2 cut(s)	388, 652
XceI	RCATGY	2 cut(s)	435, 621
XmiI	GTMKAC	1 cut(s)	606
XmnI	GAANNNNTTC	1 cut(s)	235
XspI	CTAG	2 cut(s)	488, 673
ZrmI	AGTACT	3 cut(s)	406, 463, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.