Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0012990

Physical Location & Seq

Genomic Coordinates Reverse (-)

23389099 .. 23391134

Gene Structure 2036 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g32550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCCTCCACTCTCTCTCTCTCATCCTCACTCCGCTATATTCGCCCCCCAACGCGTACATTCCACGCGCCGCTGATCTCGCGTCTCCCTCTGTCGAGGCTGCAACCGCACACGATCACTCCCCTCCGCGCGAATCTCAAGACCCCGATGTCCGCATTGGGATCTTCGTCGCCGTCGTCAACGGCCGGGATGGGAAGTCAGAAGAAGAAGGTGGAGGTGTTTGACTCGGAGGAGCAACTGGCGGCGCAGCTGGCCAAGTACACCGCCGACCTGTCGGAGAAGTTCGGCAAAGAGAGAGGCGCCTTCACAGTTGTTGTGTCCGGCGGCTCGCTTATCAATTCTCTGAGGAAACTATGTGAAGCGCCGTATTTGGAGAGTGTGGAATGGGGCAAGTGGCATGTGTTTTGGGTTGATGAGAGAGTGGTGCCTAAGGATCATGAGGACAGTAACTACAAGCTTGCTTATGATGGGTTTCTCTCTAAGGTACCGATTCCCGCAGGCAATGTTTATGCCATTAATGATGCACTGTCACCTGAGGGTGCAGCAGATGATTACGAGACTTGCCTCAAACATTTGGTTACAAATGGTGTGCTAGCCACTTCAAAAACTAGTGGGTTTCCAAAGTTTGATATCATGCTTCTGGGAATGGGTCCAGATGGGCATGTTGCTTCACTATTCCCCGGTCATCCTCTTGTCAACGAGAAGGAGAAGTGGGTCACCTTTATCAAGGACTCACCAAAACCACCACCGGAGAGGATTACTTTCACCTTTCCGGTGATCAACTCCTCTGCATATATTGCAATGGTTGTGAATGGGGCTGGAAAATCTGGTGCTGTGCAGACAGCTCTCGGAAATAGCGAGAACTCTGACACTTTGCCTGTTGCATTGGTTGCTGCTGAAGACGAATTGACTTGGTTCTTAGATAAGGAAGCTGCTTCAAAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0006081 GO:0006082 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016787 GO:0016788 GO:0017057 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0031090 GO:0034641 GO:0042126 GO:0042128 GO:0042579 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0050896 GO:0051156 GO:0051186 GO:0051704 GO:0051707 GO:0051775 GO:0052689 GO:0055086 GO:0071461 GO:0071704 GO:0071941 GO:0072524 GO:0098542 GO:0098588 GO:0098805 GO:1901135 GO:1901360 GO:1901564 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Glucosamine_iso

Protein Analysis

316

Amino Acids

34.12

Weight (kDa)

6.4

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glucosamine_iso	PF01182	76 - 305	6.5e-74	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49360 AT5G24400
fragaria_vesca	FvH4_7g32550
malus_domestica	MD01G1226300.v1.1 MD07G1296700.v1.1
prunus_persica	Prupe.2G316300_v2.0.a1
pyrus_communis	pycom01g23480 pycom07g26940
rosa_chinensis	RchiOBHm_Chr1g0382391
rosa_laevigata	RLG00000026181
rosa_multiflora	Rmu_sc0000110.1_g000044
rosa_roxburghii	Rroxscaffold_4G00278140
rosa_rugosa	Rorug01G0434000
rosa_samantha	Rh1AG458700 Rh1BG415000 Rh1CG429100 Rh1DG447100
rosa_wichuraiana	Rw1G041230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	148
Acc65I	GGTACC	1 cut(s)	484
AccB1I	GGYRCC	3 cut(s)	299, 424, 484
AccII	CGCG	5 cut(s)	55, 68, 82, 129, 131
AciI	CCGC	9 cut(s)	34, 71, 107, 127, 153, 242, 264, 324, 495
AclWI	GGATC	2 cut(s)	169, 441
AcoI	YGGCCR	2 cut(s)	183, 252
AcuI	CTGAAG	1 cut(s)	918
AcyI	GRCGYC	1 cut(s)	300
AfaI	GTAC	3 cut(s)	58, 260, 486
AflIII	ACRYGT	1 cut(s)	53
AgsI	TTSAA	2 cut(s)	603, 939
AhlI	ACTAGT	1 cut(s)	608
AluBI	AGCT	5 cut(s)	250, 457, 845, 932, 943
AluI	AGCT	5 cut(s)	250, 457, 845, 932, 943
Alw26I	GTCTC	2 cut(s)	89, 551
AlwI	GGATC	2 cut(s)	169, 441
AoxI	GGCC	3 cut(s)	3, 183, 252
ApeKI	GCWGC	5 cut(s)	100, 247, 542, 893, 932
AseI	ATTAAT	1 cut(s)	516
Asp718I	GGTACC	1 cut(s)	484
AspLEI	GCGC	5 cut(s)	70, 131, 247, 302, 364
AspS9I	GGNCC	1 cut(s)	650
AsuC2I	CCSGG	2 cut(s)	187, 681
AsuHPI	GGTGA	5 cut(s)	522, 709, 726, 757, 787
AsuNHI	GCTAGC	1 cut(s)	592
AvaII	GGWCC	1 cut(s)	650
AxyI	CCTNAGG	2 cut(s)	429, 534
BalI	TGGCCA	1 cut(s)	254
BanI	GGYRCC	3 cut(s)	299, 424, 484
BbsI	GAAGAC	1 cut(s)	906
BbvI	GCAGC	5 cut(s)	87, 259, 554, 880, 919
BccI	CCATC	3 cut(s)	184, 461, 650
BceAI	ACGGC	3 cut(s)	157, 198, 349
BclI	TGATCA	1 cut(s)	777
BcnI	CCSGG	2 cut(s)	187, 681
BcoDI	GTCTC	2 cut(s)	89, 551
BcuI	ACTAGT	1 cut(s)	608
BfaI	CTAG	2 cut(s)	593, 609
BfmI	CTRYAG	1 cut(s)	944
BfoI	RGCGCY	2 cut(s)	303, 365
BisI	GCNGC	8 cut(s)	71, 101, 243, 248, 325, 543, 894, 933
BlsI	GCNGC	8 cut(s)	72, 102, 244, 249, 326, 544, 895, 934
Bme1390I	CCNGG	2 cut(s)	187, 681
Bme18I	GGWCC	1 cut(s)	650
BmgT120I	GGNCC	1 cut(s)	650
BmiI	GGNNCC	4 cut(s)	301, 426, 486, 651
BmrFI	CCNGG	2 cut(s)	187, 681
BmsI	GCATC	1 cut(s)	511
BmtI	GCTAGC	1 cut(s)	596
BpiI	GAAGAC	1 cut(s)	906
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	2 cut(s)	187, 681
BsaHI	GRCGYC	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	679
BsaWI	WCCGGW	2 cut(s)	748, 772
BsaXI	ACNNNNNCTCC	2 cut(s)	103, 133
Bse1I	ACTGG	1 cut(s)	243
Bse21I	CCTNAGG	2 cut(s)	429, 534
Bse3DI	GCAATG	2 cut(s)	508, 807
BseDI	CCNNGG	1 cut(s)	679
BseGI	GGATG	3 cut(s)	23, 195, 685
BseMI	GCAATG	2 cut(s)	508, 807
BseMII	CTCAG	2 cut(s)	335, 525
BseNI	ACTGG	1 cut(s)	243
BseRI	GAGGAG	2 cut(s)	245, 775
BseX3I	CGGCCG	1 cut(s)	183
BseXI	GCAGC	5 cut(s)	87, 259, 554, 880, 919
BsgI	GTGCAG	2 cut(s)	561, 857
Bsh1236I	CGCG	5 cut(s)	55, 68, 82, 129, 131
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	3 cut(s)	5, 185, 254
BshNI	GGYRCC	3 cut(s)	299, 424, 484
BsiEI	CGRYCG	1 cut(s)	186
BsiSI	CCGG	5 cut(s)	186, 321, 681, 749, 773
BsmAI	GTCTC	2 cut(s)	89, 551
BsmBI	CGTCTC	1 cut(s)	89
BsnI	GGCC	3 cut(s)	5, 185, 254
Bsp143I	GATC	5 cut(s)	75, 114, 161, 433, 777
BspACI	CCGC	9 cut(s)	34, 71, 107, 127, 153, 242, 264, 324, 495
BspANI	GGCC	3 cut(s)	5, 185, 254
BspCNI	CTCAG	2 cut(s)	336, 526
BspFNI	CGCG	5 cut(s)	55, 68, 82, 129, 131
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	4 cut(s)	301, 426, 486, 651
BspOI	GCTAGC	1 cut(s)	596
BspPI	GGATC	2 cut(s)	169, 441
BspT107I	GGYRCC	3 cut(s)	299, 424, 484
BsrDI	GCAATG	2 cut(s)	508, 807
BsrI	ACTGG	1 cut(s)	243
BssECI	CCNNGG	1 cut(s)	679
BssMI	GATC	5 cut(s)	75, 114, 161, 433, 777
BssNI	GRCGYC	1 cut(s)	300
Bst4CI	ACNGT	3 cut(s)	310, 446, 528
BstACI	GRCGYC	1 cut(s)	300
BstAPI	GCANNNNNTGC	2 cut(s)	797, 890
BstC8I	GCNNGC	5 cut(s)	252, 329, 459, 499, 594
BstDEI	CTNAG	5 cut(s)	344, 429, 480, 534, 919
BstEII	GGTNACC	1 cut(s)	715
BstF5I	GGATG	3 cut(s)	23, 195, 685
BstFNI	CGCG	5 cut(s)	55, 68, 82, 129, 131
BstH2I	RGCGCY	2 cut(s)	303, 365
BstHHI	GCGC	5 cut(s)	70, 131, 247, 302, 364
BstKTI	GATC	5 cut(s)	78, 117, 164, 436, 780
BstMAI	GTCTC	2 cut(s)	89, 551
BstMBI	GATC	5 cut(s)	75, 114, 161, 433, 777
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	6 cut(s)	42, 79, 106, 251, 797, 890
BstNSI	RCATGY	2 cut(s)	401, 665
BstPI	GGTNACC	1 cut(s)	715
BstSCI	CCNGG	2 cut(s)	185, 679
BstSFI	CTRYAG	1 cut(s)	944
BstUI	CGCG	5 cut(s)	55, 68, 82, 129, 131
BstV1I	GCAGC	5 cut(s)	87, 259, 554, 880, 919
BstV2I	GAAGAC	1 cut(s)	906
BstX2I	RGATCY	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	161
BstZI	CGGCCG	1 cut(s)	183
Bsu36I	CCTNAGG	2 cut(s)	429, 534
BsuRI	GGCC	3 cut(s)	5, 185, 254
BtsCI	GGATG	3 cut(s)	23, 195, 685
BtsIMutI	CAGTG	1 cut(s)	524
Cac8I	GCNNGC	5 cut(s)	252, 329, 459, 499, 594
CciI	TCATGA	1 cut(s)	436
CfoI	GCGC	5 cut(s)	70, 131, 247, 302, 364
Cfr13I	GGNCC	1 cut(s)	650
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	3 cut(s)	57, 259, 485
CviAII	CATG	4 cut(s)	398, 437, 634, 662
CviQI	GTAC	3 cut(s)	57, 259, 485
DdeI	CTNAG	5 cut(s)	344, 429, 480, 534, 919
DinI	GGCGCC	1 cut(s)	301
DpnI	GATC	5 cut(s)	77, 116, 163, 435, 779
DpnII	GATC	5 cut(s)	75, 114, 161, 433, 777
DrdI	GACNNNNNNGTC	1 cut(s)	148
DseDI	GACNNNNNNGTC	1 cut(s)	148
EaeI	YGGCCR	2 cut(s)	183, 252
EagI	CGGCCG	1 cut(s)	183
EclXI	CGGCCG	1 cut(s)	183
Eco32I	GATATC	1 cut(s)	631
Eco47I	GGWCC	1 cut(s)	650
Eco52I	CGGCCG	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	918
Eco81I	CCTNAGG	2 cut(s)	429, 534
Eco91I	GGTNACC	1 cut(s)	715
EcoO65I	GGTNACC	1 cut(s)	715
EcoRV	GATATC	1 cut(s)	631
EgeI	GGCGCC	1 cut(s)	301
EheI	GGCGCC	1 cut(s)	301
Esp3I	CGTCTC	1 cut(s)	89
FaeI	CATG	4 cut(s)	401, 440, 637, 665
FatI	CATG	4 cut(s)	397, 436, 633, 661
FauI	CCCGC	1 cut(s)	502
FbaI	TGATCA	1 cut(s)	777
Fnu4HI	GCNGC	8 cut(s)	71, 101, 243, 248, 325, 543, 894, 933
FokI	GGATG	3 cut(s)	10, 202, 672
Fsp4HI	GCNGC	8 cut(s)	71, 101, 243, 248, 325, 543, 894, 933
FspBI	CTAG	2 cut(s)	593, 609
GlaI	GCGC	5 cut(s)	69, 130, 246, 301, 363
GluI	GCNGC	8 cut(s)	71, 101, 243, 248, 325, 543, 894, 933
HaeII	RGCGCY	2 cut(s)	303, 365
HaeIII	GGCC	3 cut(s)	5, 185, 254
HapII	CCGG	5 cut(s)	186, 321, 681, 749, 773
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	5 cut(s)	70, 131, 247, 302, 364
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	4 cut(s)	401, 440, 637, 665
Hin6I	GCGC	5 cut(s)	68, 129, 245, 300, 362
HinP1I	GCGC	5 cut(s)	68, 129, 245, 300, 362
HincII	GTYRAC	2 cut(s)	180, 697
HindII	GTYRAC	2 cut(s)	180, 697
HindIII	AAGCTT	1 cut(s)	455
HinfI	GANTC	4 cut(s)	133, 224, 490, 731
HpaII	CCGG	5 cut(s)	186, 321, 681, 749, 773
HphI	GGTGA	5 cut(s)	522, 709, 726, 757, 787
Hpy166II	GTNNAC	3 cut(s)	180, 261, 697
Hpy188I	TCNGA	6 cut(s)	201, 229, 277, 345, 851, 868
Hpy188III	TCNNGA	3 cut(s)	139, 437, 653
Hpy8I	GTNNAC	3 cut(s)	180, 261, 697
Hpy99I	CGWCG	2 cut(s)	172, 178
HpyAV	CCTTC	3 cut(s)	202, 313, 697
HpyCH4III	ACNGT	3 cut(s)	310, 446, 528
HpyCH4V	TGCA	7 cut(s)	103, 524, 542, 791, 800, 838, 884
HpyF10VI	GCNNNNNNNGC	6 cut(s)	42, 79, 106, 251, 797, 890
HpyF3I	CTNAG	5 cut(s)	344, 429, 480, 534, 919
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	4 cut(s)	401, 440, 637, 665
HspAI	GCGC	5 cut(s)	68, 129, 245, 300, 362
KasI	GGCGCC	1 cut(s)	299
KpnI	GGTACC	1 cut(s)	488
Ksp22I	TGATCA	1 cut(s)	777
Kzo9I	GATC	5 cut(s)	75, 114, 161, 433, 777
LmnI	GCTCC	1 cut(s)	232
Lsp1109I	GCAGC	5 cut(s)	87, 259, 554, 880, 919
LweI	GCATC	1 cut(s)	511
MaeI	CTAG	2 cut(s)	593, 609
MaeIII	GTNAC	4 cut(s)	446, 528, 577, 715
MalI	GATC	5 cut(s)	77, 116, 163, 435, 779
MboI	GATC	5 cut(s)	75, 114, 161, 433, 777
MboII	GAAGA	4 cut(s)	156, 214, 217, 911
MflI	RGATCY	1 cut(s)	161
MlsI	TGGCCA	1 cut(s)	254
MluCI	AATT	2 cut(s)	337, 905
MluI	ACGCGT	1 cut(s)	53
MluNI	TGGCCA	1 cut(s)	254
Mly113I	GGCGCC	1 cut(s)	300
MlyI	GAGTC	2 cut(s)	218, 725
MmeI	TCCRAC	1 cut(s)	255
Mox20I	TGGCCA	1 cut(s)	254
MscI	TGGCCA	1 cut(s)	254
MseI	TTAA	1 cut(s)	516
Msp20I	TGGCCA	1 cut(s)	254
MspA1I	CMGCKG	2 cut(s)	73, 250
MspI	CCGG	5 cut(s)	186, 321, 681, 749, 773
MspR9I	CCNGG	2 cut(s)	187, 681
MvnI	CGCG	5 cut(s)	55, 68, 82, 129, 131
MwoI	GCNNNNNNNGC	6 cut(s)	42, 79, 106, 251, 797, 890
NarI	GGCGCC	1 cut(s)	300
NciI	CCSGG	2 cut(s)	187, 681
NdeII	GATC	5 cut(s)	75, 114, 161, 433, 777
NheI	GCTAGC	1 cut(s)	592
NlaIII	CATG	4 cut(s)	401, 440, 637, 665
NlaIV	GGNNCC	4 cut(s)	301, 426, 486, 651
NmuCI	GTSAC	2 cut(s)	528, 715
NspI	RCATGY	2 cut(s)	401, 665
PagI	TCATGA	1 cut(s)	436
PcsI	WCGNNNNNNNCGW	2 cut(s)	173, 855
PfeI	GAWTC	2 cut(s)	133, 490
PkrI	GCNGC	8 cut(s)	72, 102, 244, 249, 326, 544, 895, 934
PleI	GAGTC	2 cut(s)	218, 725
PluTI	GGCGCC	1 cut(s)	303
PpsI	GAGTC	2 cut(s)	218, 725
PshBI	ATTAAT	1 cut(s)	516
PspEI	GGTNACC	1 cut(s)	715
PspN4I	GGNNCC	4 cut(s)	301, 426, 486, 651
PspPI	GGNCC	1 cut(s)	650
PsuI	RGATCY	1 cut(s)	161
PvuII	CAGCTG	1 cut(s)	250
RsaI	GTAC	3 cut(s)	58, 260, 486
RsaNI	GTAC	3 cut(s)	57, 259, 485
SaqAI	TTAA	1 cut(s)	516
SatI	GCNGC	8 cut(s)	71, 101, 243, 248, 325, 543, 894, 933
Sau3AI	GATC	5 cut(s)	75, 114, 161, 433, 777
Sau96I	GGNCC	1 cut(s)	650
SchI	GAGTC	2 cut(s)	218, 725
ScrFI	CCNGG	2 cut(s)	187, 681
SfaNI	GCATC	1 cut(s)	511
SfcI	CTRYAG	1 cut(s)	944
SfoI	GGCGCC	1 cut(s)	301
SinI	GGWCC	1 cut(s)	650
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SpeI	ACTAGT	1 cut(s)	608
Sse9I	AATT	2 cut(s)	337, 905
SsiI	CCGC	9 cut(s)	34, 71, 107, 127, 153, 242, 264, 324, 495
SspDI	GGCGCC	1 cut(s)	299
SspMI	CTAG	2 cut(s)	593, 609
StyD4I	CCNGG	2 cut(s)	185, 679
TaaI	ACNGT	3 cut(s)	310, 446, 528
TaqI	TCGA	1 cut(s)	95
TasI	AATT	2 cut(s)	337, 905
TatI	WGTACW	1 cut(s)	258
TauI	GCSGC	3 cut(s)	73, 245, 327
TfiI	GAWTC	2 cut(s)	133, 490
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TscAI	CASTG	1 cut(s)	531
TseFI	GTSAC	2 cut(s)	528, 715
TseI	GCWGC	5 cut(s)	100, 247, 542, 893, 932
Tsp45I	GTSAC	2 cut(s)	528, 715
TspRI	CASTG	1 cut(s)	531
VpaK11BI	GGWCC	1 cut(s)	650
VspI	ATTAAT	1 cut(s)	516
XceI	RCATGY	2 cut(s)	401, 665
XspI	CTAG	2 cut(s)	593, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.