Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0012990

Physical Location & Seq

Genomic Coordinates Reverse (-)

31669479 .. 31671727

Gene Structure 2249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1226300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCGGGCCAGTGTGAGAAGAAGGTGGAGAAGTTTCAGACGGAGGAGGAAGTGGCGGTGCGTCTGGCGAAGTACACCGCCGACCTGTCGGCCAAGTTTGTGAAGGAGAGGGGAGTTTTTACCGTCGTCTTGTCCGGCGGCTCTCTCATTTACACGCTCAGGAAATTAGCGGAAGAGCCGTATAAGGATACGGTGGAGTGGGGGAAATGGCATGTGTTCTGGCTGGACGAGAGAGTGGTGAAGAAGGATCACCCCGACAGTAACTATAAACTTGCTTTTGATGGTTTGCTCTGTAAGGTACTGATTCCCCCTGGTCAGGTTTACGCCATTAATGATGCACTTTCGGCCGAGGCAGCAGCAGAAGATTACGAAACCTGTCTTAAACATTTGGTCCAGCGCAATGTGATTGCCACTTCAAAAGCTACTGGATTTCCAAAGTTTGATCTCATACTTCTGGGTATGGGTCCAGATGGACATCTTGCTTCTCTATTCCCTGGTCATGCGCTTTGCAACGAGAAGACGAAATGGGTGACTCACATTATGGACTCCCCAAAGCCACCTCCACAGAGAATTACTTTTACTTTTCCGGTGATCAACTCTGCTGCATACAATGCAATGGTGGTGACAGGCCATGACACAGCTGATGCCGTGCAGAAAGCACTCGGAAATATTCAGCATCCTGATACTTTGCCTGCTCAGTTGCTCGCAGCTGAAGACGAGGTAACTTGGTTTTTAGATCACGATGCAGCTTCCAAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0006081 GO:0006082 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016787 GO:0016788 GO:0017057 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0031090 GO:0034641 GO:0042126 GO:0042128 GO:0042579 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0050896 GO:0051156 GO:0051186 GO:0051704 GO:0051707 GO:0051775 GO:0052689 GO:0055086 GO:0071461 GO:0071704 GO:0071941 GO:0072524 GO:0098542 GO:0098588 GO:0098805 GO:1901135 GO:1901360 GO:1901564 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Glucosamine_iso

Protein Analysis

254

Amino Acids

28.04

Weight (kDa)

5.85

Isoelectric Point (pI)

26.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glucosamine_iso	PF01182	14 - 243	3.5e-69	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49360 AT5G24400
fragaria_vesca	FvH4_7g32550
malus_domestica	MD01G1226300.v1.1 MD07G1296700.v1.1
prunus_persica	Prupe.2G316300_v2.0.a1
pyrus_communis	pycom01g23480 pycom07g26940
rosa_chinensis	RchiOBHm_Chr1g0382391
rosa_laevigata	RLG00000026181
rosa_multiflora	Rmu_sc0000110.1_g000044
rosa_roxburghii	Rroxscaffold_4G00278140
rosa_rugosa	Rorug01G0434000
rosa_samantha	Rh1AG458700 Rh1BG415000 Rh1CG429100 Rh1DG447100
rosa_wichuraiana	Rw1G041230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	5, 56, 78, 138, 170
AclWI	GGATC	1 cut(s)	255
AcoI	YGGCCR	2 cut(s)	90, 345
AcuI	CTGAAG	1 cut(s)	732
AfaI	GTAC	2 cut(s)	74, 300
AfiI	CCNNNNNNNGG	1 cut(s)	316
AgsI	TTSAA	1 cut(s)	417
AjnI	CCWGG	2 cut(s)	310, 493
AluBI	AGCT	5 cut(s)	422, 641, 710, 749, 757
AluI	AGCT	5 cut(s)	422, 641, 710, 749, 757
AlwI	GGATC	1 cut(s)	255
AoxI	GGCC	4 cut(s)	7, 90, 345, 628
ApeKI	GCWGC	5 cut(s)	353, 356, 602, 707, 746
AseI	ATTAAT	1 cut(s)	330
AspLEI	GCGC	2 cut(s)	399, 505
AspS9I	GGNCC	3 cut(s)	7, 391, 464
AsuHPI	GGTGA	5 cut(s)	242, 250, 541, 601, 634
AvaII	GGWCC	2 cut(s)	391, 464
BbsI	GAAGAC	2 cut(s)	524, 720
BbvI	GCAGC	5 cut(s)	365, 368, 589, 719, 758
BccI	CCATC	2 cut(s)	275, 464
BceAI	ACGGC	2 cut(s)	163, 632
BciT130I	CCWGG	2 cut(s)	312, 495
BciVI	GTATCC	1 cut(s)	181
BclI	TGATCA	1 cut(s)	591
BfmI	CTRYAG	1 cut(s)	758
BfuI	GTATCC	1 cut(s)	181
BisI	GCNGC	6 cut(s)	139, 354, 357, 603, 708, 747
BlsI	GCNGC	6 cut(s)	140, 355, 358, 604, 709, 748
Bme1390I	CCNGG	2 cut(s)	312, 495
Bme18I	GGWCC	2 cut(s)	391, 464
BmgT120I	GGNCC	3 cut(s)	7, 391, 464
BmiI	GGNNCC	1 cut(s)	465
BmrFI	CCNGG	2 cut(s)	312, 495
BmsI	GCATC	4 cut(s)	325, 634, 685, 733
BpiI	GAAGAC	2 cut(s)	524, 720
Bpu10I	CCTNAGC	1 cut(s)	158
BsaBI	GATNNNNATC	1 cut(s)	474
BsaJI	CCNNGG	3 cut(s)	310, 348, 493
BsaWI	WCCGGW	1 cut(s)	586
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse1I	ACTGG	2 cut(s)	10, 430
Bse3DI	GCAATG	2 cut(s)	406, 621
Bse8I	GATNNNNATC	1 cut(s)	474
BseBI	CCWGG	2 cut(s)	312, 495
BseDI	CCNNGG	3 cut(s)	310, 348, 493
BseGI	GGATG	1 cut(s)	676
BseJI	GATNNNNATC	1 cut(s)	474
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMI	GCAATG	2 cut(s)	406, 621
BseMII	CTCAG	2 cut(s)	172, 710
BseNI	ACTGG	2 cut(s)	10, 430
BseRI	GAGGAG	1 cut(s)	59
BseX3I	CGGCCG	1 cut(s)	345
BseXI	GCAGC	5 cut(s)	365, 368, 589, 719, 758
BsgI	GTGCAG	1 cut(s)	671
Bsh1285I	CGRYCG	1 cut(s)	348
BshFI	GGCC	4 cut(s)	9, 92, 347, 630
BsiEI	CGRYCG	1 cut(s)	348
BsiSI	CCGG	2 cut(s)	135, 587
BslI	CCNNNNNNNGG	1 cut(s)	316
BsnI	GGCC	4 cut(s)	9, 92, 347, 630
Bsp143I	GATC	4 cut(s)	247, 442, 591, 736
BspACI	CCGC	5 cut(s)	5, 56, 78, 138, 170
BspANI	GGCC	4 cut(s)	9, 92, 347, 630
BspCNI	CTCAG	2 cut(s)	171, 709
BspLI	GGNNCC	1 cut(s)	465
BspPI	GGATC	1 cut(s)	255
BspQI	GCTCTTC	1 cut(s)	168
BsrDI	GCAATG	2 cut(s)	406, 621
BsrI	ACTGG	2 cut(s)	10, 430
BssECI	CCNNGG	3 cut(s)	310, 348, 493
BssMI	GATC	4 cut(s)	247, 442, 591, 736
Bst2UI	CCWGG	2 cut(s)	312, 495
Bst4CI	ACNGT	3 cut(s)	124, 193, 260
Bst6I	CTCTTC	1 cut(s)	168
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstC8I	GCNNGC	3 cut(s)	7, 693, 705
BstDEI	CTNAG	2 cut(s)	158, 696
BstF5I	GGATG	1 cut(s)	676
BstHHI	GCGC	2 cut(s)	399, 505
BstKTI	GATC	4 cut(s)	250, 445, 594, 739
BstMBI	GATC	4 cut(s)	247, 442, 591, 736
BstMCI	CGRYCG	1 cut(s)	348
BstMWI	GCNNNNNNNGC	3 cut(s)	344, 353, 611
BstNI	CCWGG	2 cut(s)	312, 495
BstNSI	RCATGY	1 cut(s)	215
BstSCI	CCNGG	2 cut(s)	310, 493
BstSFI	CTRYAG	1 cut(s)	758
BstV1I	GCAGC	5 cut(s)	365, 368, 589, 719, 758
BstV2I	GAAGAC	2 cut(s)	524, 720
BstZI	CGGCCG	1 cut(s)	345
BsuI	GTATCC	1 cut(s)	181
BsuRI	GGCC	4 cut(s)	9, 92, 347, 630
BtsCI	GGATG	1 cut(s)	676
BtsIMutI	CAGTG	1 cut(s)	17
Cac8I	GCNNGC	3 cut(s)	7, 693, 705
CfoI	GCGC	2 cut(s)	399, 505
Cfr13I	GGNCC	3 cut(s)	7, 391, 464
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	2 cut(s)	73, 299
CviAII	CATG	3 cut(s)	212, 500, 632
CviQI	GTAC	2 cut(s)	73, 299
DdeI	CTNAG	2 cut(s)	158, 696
DpnI	GATC	4 cut(s)	249, 444, 593, 738
DpnII	GATC	4 cut(s)	247, 442, 591, 736
EaeI	YGGCCR	2 cut(s)	90, 345
EagI	CGGCCG	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
EclXI	CGGCCG	1 cut(s)	345
Eco47I	GGWCC	2 cut(s)	391, 464
Eco52I	CGGCCG	1 cut(s)	345
Eco57I	CTGAAG	1 cut(s)	732
EcoRII	CCWGG	2 cut(s)	310, 493
FaeI	CATG	3 cut(s)	215, 503, 635
FaiI	YATR	9 cut(s)	183, 213, 267, 449, 461, 501, 542, 607, 633
FatI	CATG	3 cut(s)	211, 499, 631
FbaI	TGATCA	1 cut(s)	591
Fnu4HI	GCNGC	6 cut(s)	139, 354, 357, 603, 708, 747
FokI	GGATG	1 cut(s)	663
Fsp4HI	GCNGC	6 cut(s)	139, 354, 357, 603, 708, 747
GlaI	GCGC	2 cut(s)	398, 504
GluI	GCNGC	6 cut(s)	139, 354, 357, 603, 708, 747
HaeIII	GGCC	4 cut(s)	9, 92, 347, 630
HapII	CCGG	2 cut(s)	135, 587
HgaI	GACGC	1 cut(s)	50
HhaI	GCGC	2 cut(s)	399, 505
Hin1II	CATG	3 cut(s)	215, 503, 635
Hin6I	GCGC	2 cut(s)	397, 503
HinP1I	GCGC	2 cut(s)	397, 503
HinfI	GANTC	3 cut(s)	304, 532, 545
HpaII	CCGG	2 cut(s)	135, 587
HphI	GGTGA	5 cut(s)	242, 250, 541, 601, 634
Hpy166II	GTNNAC	2 cut(s)	75, 322
Hpy188I	TCNGA	2 cut(s)	39, 665
Hpy188III	TCNNGA	4 cut(s)	160, 467, 680, 740
Hpy8I	GTNNAC	2 cut(s)	75, 322
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	3 cut(s)	16, 97, 238
HpyCH4III	ACNGT	3 cut(s)	124, 193, 260
HpyCH4V	TGCA	6 cut(s)	338, 510, 605, 614, 652, 746
HpyF10VI	GCNNNNNNNGC	3 cut(s)	344, 353, 611
HpyF3I	CTNAG	2 cut(s)	158, 696
Hsp92II	CATG	3 cut(s)	215, 503, 635
HspAI	GCGC	2 cut(s)	397, 503
Ksp22I	TGATCA	1 cut(s)	591
Kzo9I	GATC	4 cut(s)	247, 442, 591, 736
LguI	GCTCTTC	1 cut(s)	168
Lsp1109I	GCAGC	5 cut(s)	365, 368, 589, 719, 758
LweI	GCATC	4 cut(s)	325, 634, 685, 733
MaeIII	GTNAC	4 cut(s)	260, 529, 622, 721
MalI	GATC	4 cut(s)	249, 444, 593, 738
MboI	GATC	4 cut(s)	247, 442, 591, 736
MboII	GAAGA	6 cut(s)	31, 185, 253, 374, 529, 725
MluCI	AATT	2 cut(s)	164, 570
MlyI	GAGTC	2 cut(s)	526, 539
MnlI	CCTC	6 cut(s)	37, 40, 102, 343, 570, 712
MseI	TTAA	2 cut(s)	330, 381
MspA1I	CMGCKG	2 cut(s)	641, 710
MspI	CCGG	2 cut(s)	135, 587
MspR9I	CCNGG	2 cut(s)	312, 495
MvaI	CCWGG	2 cut(s)	312, 495
MwoI	GCNNNNNNNGC	3 cut(s)	344, 353, 611
NdeII	GATC	4 cut(s)	247, 442, 591, 736
NlaIII	CATG	3 cut(s)	215, 503, 635
NlaIV	GGNNCC	1 cut(s)	465
NmeAIII	GCCGAG	1 cut(s)	373
NmuCI	GTSAC	2 cut(s)	529, 622
NspI	RCATGY	1 cut(s)	215
PciSI	GCTCTTC	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	304
PkrI	GCNGC	6 cut(s)	140, 355, 358, 604, 709, 748
PleI	GAGTC	2 cut(s)	526, 539
PpsI	GAGTC	2 cut(s)	526, 539
PshBI	ATTAAT	1 cut(s)	330
Psp6I	CCWGG	2 cut(s)	310, 493
PspGI	CCWGG	2 cut(s)	310, 493
PspN4I	GGNNCC	1 cut(s)	465
PspPI	GGNCC	3 cut(s)	7, 391, 464
PvuII	CAGCTG	2 cut(s)	641, 710
RsaI	GTAC	2 cut(s)	74, 300
RsaNI	GTAC	2 cut(s)	73, 299
SapI	GCTCTTC	1 cut(s)	168
SaqAI	TTAA	2 cut(s)	330, 381
SatI	GCNGC	6 cut(s)	139, 354, 357, 603, 708, 747
Sau3AI	GATC	4 cut(s)	247, 442, 591, 736
Sau96I	GGNCC	3 cut(s)	7, 391, 464
SchI	GAGTC	2 cut(s)	526, 539
ScrFI	CCNGG	2 cut(s)	312, 495
SfaNI	GCATC	4 cut(s)	325, 634, 685, 733
SfcI	CTRYAG	1 cut(s)	758
SinI	GGWCC	2 cut(s)	391, 464
Sse9I	AATT	2 cut(s)	164, 570
SsiI	CCGC	5 cut(s)	5, 56, 78, 138, 170
SspI	AATATT	1 cut(s)	670
StyD4I	CCNGG	2 cut(s)	310, 493
TaaI	ACNGT	3 cut(s)	124, 193, 260
TasI	AATT	2 cut(s)	164, 570
TatI	WGTACW	1 cut(s)	72
TauI	GCSGC	1 cut(s)	141
TfiI	GAWTC	1 cut(s)	304
Tru1I	TTAA	2 cut(s)	330, 381
Tru9I	TTAA	2 cut(s)	330, 381
TscAI	CASTG	1 cut(s)	17
TseFI	GTSAC	2 cut(s)	529, 622
TseI	GCWGC	5 cut(s)	353, 356, 602, 707, 746
Tsp45I	GTSAC	2 cut(s)	529, 622
TspGWI	ACGGA	1 cut(s)	56
TspRI	CASTG	1 cut(s)	17
VpaK11BI	GGWCC	2 cut(s)	391, 464
VspI	ATTAAT	1 cut(s)	330
XceI	RCATGY	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.