Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012990

Physical Location & Seq

Genomic Coordinates Reverse (-)

8330243 .. 8331963

Gene Structure 1721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G24400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCTTCTTCTTCTTGTTTCCTTCGCTCGATTCTCTTCTCTTCTCCTACTAACCTTCGTTCAAATCACCATCTCCCCACTTTCTTCCCCAAGAATTATCTCATTTGCTCTCATTCCACTTCTTCTCGCTTCGAATCGCTCTCGGTTTCATCGATCGGAACTGGATCTACCAAGAAATCATCCGATACTCGGAGAAAGGTAAAGAGCATGGCTACGACAAATATAGGAAAGGAGGAGAAGAAAAGAGTCGAGATTTATGATCTCGAAGAGAATTTAGTGATTGATTTGGCTAAATTCACAGCAGATCTCTCCGATAAGTTTTGTAAAGAGAGAGGCGCTTTCACCGTCGTTGTCTCCGGTGGCTCTCTCATCAAATCACTCCGGAAATTAGTAGAATCTCCTTACGTTGATTCTATAGATTGGGCAAGGTGGCATTTTTTCTGGGTTGACGAGAGAGTTGTTCCCAAGAATCACGATGATAGCAACTATAAACTCGCTTATGATAGTTTTCTATCCAAGGTACCAATTCCGCCTGGAAATGTATATGCAATCAACGAAGCCCTCTCCGCTGAGGCTGCAGCGGATGATTACGAGACCTGCCTCAAACATTTGGTCAACACCAACATTCTCCGTGTATCTGAATCAACTGGCTTTCCCAAATTTGATCTCATGCTTCTAGGTATGGGACCTGATGGTCATGTGGCATCATTATTCCCTGGGCATGGTCTCTGCAACGAGAGCAAGAAATGGGTAGTTTCAATCTCTGACTCTCCAAAACCACCGTCTGAGAGAATCACCTTCACGTTCCCGGTCATCAACTCATCTGCACATGTAGCTCTAGTTGTTTGCGGTTCTGGGAAAGCTGAAGCTGTGGAGGCAGCTTTAAAGAAGACTGGGAATGTACCACCTGCTGGTTCTGTTTCTGCTGAAGACGAGTTGGTTTGGTTCCTGGACAAACCAGCATCTTCCAAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0006081 GO:0006082 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016787 GO:0016788 GO:0017057 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0031090 GO:0034641 GO:0042126 GO:0042128 GO:0042579 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0050896 GO:0051156 GO:0051186 GO:0051704 GO:0051707 GO:0051775 GO:0052689 GO:0055086 GO:0071461 GO:0071704 GO:0071941 GO:0072524 GO:0098542 GO:0098588 GO:0098805 GO:1901135 GO:1901360 GO:1901564 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Glucosamine_iso

Protein Analysis

325

Amino Acids

35.64

Weight (kDa)

7.64

Isoelectric Point (pI)

46.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glucosamine_iso	PF01182	89 - 315	1.4e-72	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49360 AT5G24400
fragaria_vesca	FvH4_7g32550
malus_domestica	MD01G1226300.v1.1 MD07G1296700.v1.1
prunus_persica	Prupe.2G316300_v2.0.a1
pyrus_communis	pycom01g23480 pycom07g26940
rosa_chinensis	RchiOBHm_Chr1g0382391
rosa_laevigata	RLG00000026181
rosa_multiflora	Rmu_sc0000110.1_g000044
rosa_roxburghii	Rroxscaffold_4G00278140
rosa_rugosa	Rorug01G0434000
rosa_samantha	Rh1AG458700 Rh1BG415000 Rh1CG429100 Rh1DG447100
rosa_wichuraiana	Rw1G041230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	916
AasI	GACNNNNNNGTC	1 cut(s)	693
Acc36I	ACCTGC	2 cut(s)	605, 916
Acc65I	GGTACC	1 cut(s)	520
AccB1I	GGYRCC	1 cut(s)	520
AccB7I	CCANNNNNTGG	1 cut(s)	911
AccIII	TCCGGA	1 cut(s)	381
AciI	CCGC	4 cut(s)	530, 567, 581, 849
AclWI	GGATC	1 cut(s)	172
AcsI	RAATTY	3 cut(s)	271, 293, 659
AcuI	CTGAAG	2 cut(s)	885, 948
AfaI	GTAC	2 cut(s)	522, 903
AfiI	CCNNNNNNNGG	3 cut(s)	189, 722, 911
AflIII	ACRYGT	1 cut(s)	829
AgsI	TTSAA	2 cut(s)	63, 759
AjnI	CCWGG	3 cut(s)	532, 715, 948
AluBI	AGCT	5 cut(s)	836, 863, 869, 881, 973
AluI	AGCT	5 cut(s)	836, 863, 869, 881, 973
Alw26I	GTCTC	3 cut(s)	358, 587, 731
AlwI	GGATC	1 cut(s)	172
Aor13HI	TCCGGA	1 cut(s)	381
ApeKI	GCWGC	3 cut(s)	575, 578, 878
ApoI	RAATTY	3 cut(s)	271, 293, 659
ArsI	GACNNNNNNTTYG	4 cut(s)	597, 629, 767, 799
Asp718I	GGTACC	1 cut(s)	520
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	1 cut(s)	686
AsuC2I	CCSGG	1 cut(s)	809
AsuHPI	GGTGA	3 cut(s)	59, 334, 787
AsuII	TTCGAA	1 cut(s)	132
AvaII	GGWCC	1 cut(s)	686
BanI	GGYRCC	1 cut(s)	520
BbsI	GAAGAC	2 cut(s)	896, 936
BbvCI	CCTCAGC	1 cut(s)	570
BbvI	GCAGC	3 cut(s)	562, 590, 890
BccI	CCATC	2 cut(s)	78, 686
BciT130I	CCWGG	3 cut(s)	534, 717, 950
BcnI	CCSGG	1 cut(s)	809
BcoDI	GTCTC	3 cut(s)	358, 587, 731
BfaI	CTAG	2 cut(s)	677, 839
BfmI	CTRYAG	2 cut(s)	414, 576
BfoI	RGCGCY	1 cut(s)	339
BfuAI	ACCTGC	2 cut(s)	605, 916
BglII	AGATCT	1 cut(s)	304
BisI	GCNGC	3 cut(s)	576, 579, 879
BlsI	GCNGC	3 cut(s)	577, 580, 880
Bme1390I	CCNGG	4 cut(s)	534, 717, 809, 950
Bme18I	GGWCC	1 cut(s)	686
BmgT120I	GGNCC	1 cut(s)	686
BmiI	GGNNCC	3 cut(s)	522, 687, 947
BmrFI	CCNGG	4 cut(s)	534, 717, 809, 950
BmrI	ACTGGG	1 cut(s)	903
BmsI	GCATC	2 cut(s)	713, 971
BmuI	ACTGGG	1 cut(s)	903
BpiI	GAAGAC	2 cut(s)	896, 936
Bpu10I	CCTNAGC	1 cut(s)	570
Bpu14I	TTCGAA	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	809
Bsa29I	ATCGAT	1 cut(s)	152
BsaI	GGTCTC	2 cut(s)	587, 731
BsaJI	CCNNGG	3 cut(s)	516, 715, 716
BsaWI	WCCGGW	2 cut(s)	356, 381
Bsc4I	CCNNNNNNNGG	3 cut(s)	189, 722, 911
Bse1I	ACTGG	3 cut(s)	166, 652, 898
BseAI	TCCGGA	1 cut(s)	381
BseBI	CCWGG	3 cut(s)	534, 717, 950
BseCI	ATCGAT	1 cut(s)	152
BseDI	CCNNGG	3 cut(s)	516, 715, 716
BseGI	GGATG	2 cut(s)	179, 589
BseLI	CCNNNNNNNGG	3 cut(s)	189, 722, 911
BseMII	CTCAG	2 cut(s)	561, 777
BseNI	ACTGG	3 cut(s)	166, 652, 898
BseRI	GAGGAG	1 cut(s)	248
BseXI	GCAGC	3 cut(s)	562, 590, 890
BsgI	GTGCAG	1 cut(s)	810
Bsh1285I	CGRYCG	1 cut(s)	156
BshNI	GGYRCC	1 cut(s)	520
BshVI	ATCGAT	1 cut(s)	152
BsiEI	CGRYCG	1 cut(s)	156
BsiSI	CCGG	3 cut(s)	357, 382, 809
BslFI	GGGAC	1 cut(s)	699
BslI	CCNNNNNNNGG	3 cut(s)	189, 722, 911
BsmAI	GTCTC	3 cut(s)	358, 587, 731
BsmFI	GGGAC	1 cut(s)	699
Bso31I	GGTCTC	2 cut(s)	587, 731
Bsp119I	TTCGAA	1 cut(s)	132
Bsp13I	TCCGGA	1 cut(s)	381
Bsp143I	GATC	5 cut(s)	153, 164, 259, 304, 664
BspACI	CCGC	4 cut(s)	530, 567, 581, 849
BspCNI	CTCAG	2 cut(s)	562, 778
BspDI	ATCGAT	1 cut(s)	152
BspEI	TCCGGA	1 cut(s)	381
BspLI	GGNNCC	3 cut(s)	522, 687, 947
BspMAI	CTGCAG	1 cut(s)	580
BspMI	ACCTGC	2 cut(s)	605, 916
BspPI	GGATC	1 cut(s)	172
BspT104I	TTCGAA	1 cut(s)	132
BspT107I	GGYRCC	1 cut(s)	520
BspTNI	GGTCTC	2 cut(s)	587, 731
BsrI	ACTGG	3 cut(s)	166, 652, 898
BssECI	CCNNGG	3 cut(s)	516, 715, 716
BssMI	GATC	5 cut(s)	153, 164, 259, 304, 664
BssT1I	CCWWGG	1 cut(s)	516
Bst2UI	CCWGG	3 cut(s)	534, 717, 950
Bst4CI	ACNGT	2 cut(s)	346, 783
Bst6I	CTCTTC	3 cut(s)	41, 46, 261
BstBI	TTCGAA	1 cut(s)	132
BstDEI	CTNAG	2 cut(s)	570, 786
BstF5I	GGATG	2 cut(s)	179, 589
BstH2I	RGCGCY	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	5 cut(s)	156, 167, 262, 307, 667
BstMAI	GTCTC	3 cut(s)	358, 587, 731
BstMBI	GATC	5 cut(s)	153, 164, 259, 304, 664
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	5 cut(s)	566, 575, 738, 833, 875
BstNI	CCWGG	3 cut(s)	534, 717, 950
BstNSI	RCATGY	1 cut(s)	833
BstSCI	CCNGG	4 cut(s)	532, 715, 807, 948
BstSFI	CTRYAG	2 cut(s)	414, 576
BstV1I	GCAGC	3 cut(s)	562, 590, 890
BstV2I	GAAGAC	2 cut(s)	896, 936
BstX2I	RGATCY	2 cut(s)	164, 304
BstYI	RGATCY	2 cut(s)	164, 304
Bsu15I	ATCGAT	1 cut(s)	152
BsuTUI	ATCGAT	1 cut(s)	152
BtsCI	GGATG	2 cut(s)	179, 589
BveI	ACCTGC	2 cut(s)	605, 916
CfoI	GCGC	1 cut(s)	338
Cfr13I	GGNCC	1 cut(s)	686
ClaI	ATCGAT	1 cut(s)	152
Csp6I	GTAC	2 cut(s)	521, 902
CviAII	CATG	5 cut(s)	208, 670, 698, 722, 830
CviQI	GTAC	2 cut(s)	521, 902
DdeI	CTNAG	2 cut(s)	570, 786
DpnI	GATC	5 cut(s)	155, 166, 261, 306, 666
DpnII	GATC	5 cut(s)	153, 164, 259, 304, 664
DraI	TTTAAA	1 cut(s)	885
DrdI	GACNNNNNNGTC	1 cut(s)	693
DseDI	GACNNNNNNGTC	1 cut(s)	693
Eam1104I	CTCTTC	3 cut(s)	41, 46, 261
EarI	CTCTTC	3 cut(s)	41, 46, 261
EciI	GGCGGA	1 cut(s)	519
Eco130I	CCWWGG	1 cut(s)	516
Eco31I	GGTCTC	2 cut(s)	587, 731
Eco47I	GGWCC	1 cut(s)	686
Eco57I	CTGAAG	2 cut(s)	885, 948
EcoO109I	RGGNCCY	1 cut(s)	686
EcoRII	CCWGG	3 cut(s)	532, 715, 948
EcoT14I	CCWWGG	1 cut(s)	516
ErhI	CCWWGG	1 cut(s)	516
FaeI	CATG	5 cut(s)	211, 673, 701, 725, 833
FaqI	GGGAC	1 cut(s)	699
FatI	CATG	5 cut(s)	207, 669, 697, 721, 829
Fnu4HI	GCNGC	3 cut(s)	576, 579, 879
FokI	GGATG	2 cut(s)	166, 596
Fsp4HI	GCNGC	3 cut(s)	576, 579, 879
FspBI	CTAG	2 cut(s)	677, 839
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	3 cut(s)	576, 579, 879
HaeII	RGCGCY	1 cut(s)	339
HapII	CCGG	3 cut(s)	357, 382, 809
HhaI	GCGC	1 cut(s)	338
Hin1II	CATG	5 cut(s)	211, 673, 701, 725, 833
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HincII	GTYRAC	2 cut(s)	448, 616
HindII	GTYRAC	2 cut(s)	448, 616
HinfI	GANTC	9 cut(s)	31, 134, 246, 395, 410, 469, 641, 767, 792
HpaII	CCGG	3 cut(s)	357, 382, 809
HphI	GGTGA	3 cut(s)	59, 334, 787
Hpy166II	GTNNAC	2 cut(s)	448, 616
Hpy188I	TCNGA	7 cut(s)	158, 184, 192, 313, 640, 766, 787
Hpy188III	TCNNGA	4 cut(s)	250, 263, 382, 473
Hpy8I	GTNNAC	2 cut(s)	448, 616
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	3 cut(s)	32, 65, 808
HpyCH4III	ACNGT	2 cut(s)	346, 783
HpyCH4IV	ACGT	2 cut(s)	405, 803
HpyCH4V	TGCA	4 cut(s)	548, 578, 732, 827
HpyF10VI	GCNNNNNNNGC	5 cut(s)	566, 575, 738, 833, 875
HpyF3I	CTNAG	2 cut(s)	570, 786
HpySE526I	ACGT	2 cut(s)	405, 803
Hsp92II	CATG	5 cut(s)	211, 673, 701, 725, 833
HspAI	GCGC	1 cut(s)	336
Kpn2I	TCCGGA	1 cut(s)	381
KpnI	GGTACC	1 cut(s)	524
Kzo9I	GATC	5 cut(s)	153, 164, 259, 304, 664
Lsp1109I	GCAGC	3 cut(s)	562, 590, 890
LweI	GCATC	2 cut(s)	713, 971
MaeI	CTAG	2 cut(s)	677, 839
MaeII	ACGT	2 cut(s)	405, 803
MalI	GATC	5 cut(s)	155, 166, 261, 306, 666
MboI	GATC	5 cut(s)	153, 164, 259, 304, 664
MflI	RGATCY	2 cut(s)	164, 304
MluCI	AATT	6 cut(s)	94, 271, 293, 386, 525, 659
MlyI	GAGTC	2 cut(s)	255, 761
MnlI	CCTC	6 cut(s)	226, 326, 565, 572, 611, 868
MroI	TCCGGA	1 cut(s)	381
MseI	TTAA	1 cut(s)	884
MspA1I	CMGCKG	2 cut(s)	569, 581
MspI	CCGG	3 cut(s)	357, 382, 809
MspR9I	CCNGG	4 cut(s)	534, 717, 809, 950
MvaI	CCWGG	3 cut(s)	534, 717, 950
MwoI	GCNNNNNNNGC	5 cut(s)	566, 575, 738, 833, 875
NciI	CCSGG	1 cut(s)	809
NdeII	GATC	5 cut(s)	153, 164, 259, 304, 664
NlaIII	CATG	5 cut(s)	211, 673, 701, 725, 833
NlaIV	GGNNCC	3 cut(s)	522, 687, 947
NspI	RCATGY	1 cut(s)	833
NspV	TTCGAA	1 cut(s)	132
PaqCI	CACCTGC	1 cut(s)	916
PasI	CCCWGGG	1 cut(s)	716
PciI	ACATGT	1 cut(s)	829
PcsI	WCGNNNNNNNCGW	1 cut(s)	149
PfeI	GAWTC	7 cut(s)	31, 134, 395, 410, 469, 641, 792
PflMI	CCANNNNNTGG	1 cut(s)	911
PfoI	TCCNGGA	1 cut(s)	948
PkrI	GCNGC	3 cut(s)	577, 580, 880
Ple19I	CGATCG	1 cut(s)	156
PleI	GAGTC	2 cut(s)	254, 761
PpsI	GAGTC	2 cut(s)	254, 761
PpuMI	RGGWCCY	1 cut(s)	686
PscI	ACATGT	1 cut(s)	829
Psp5II	RGGWCCY	1 cut(s)	686
Psp6I	CCWGG	3 cut(s)	532, 715, 948
PspGI	CCWGG	3 cut(s)	532, 715, 948
PspN4I	GGNNCC	3 cut(s)	522, 687, 947
PspPI	GGNCC	1 cut(s)	686
PspPPI	RGGWCCY	1 cut(s)	686
PsrI	GAACNNNNNNTAC	2 cut(s)	151, 183
PstI	CTGCAG	1 cut(s)	580
PsuI	RGATCY	2 cut(s)	164, 304
PvuI	CGATCG	1 cut(s)	156
RsaI	GTAC	2 cut(s)	522, 903
RsaNI	GTAC	2 cut(s)	521, 902
SaqAI	TTAA	1 cut(s)	884
SatI	GCNGC	3 cut(s)	576, 579, 879
Sau3AI	GATC	5 cut(s)	153, 164, 259, 304, 664
Sau96I	GGNCC	1 cut(s)	686
SchI	GAGTC	2 cut(s)	255, 761
ScrFI	CCNGG	4 cut(s)	534, 717, 809, 950
SfaNI	GCATC	2 cut(s)	713, 971
SfcI	CTRYAG	2 cut(s)	414, 576
SfuI	TTCGAA	1 cut(s)	132
SinI	GGWCC	1 cut(s)	686
Sse9I	AATT	6 cut(s)	94, 271, 293, 386, 525, 659
SsiI	CCGC	4 cut(s)	530, 567, 581, 849
SspMI	CTAG	2 cut(s)	677, 839
StyD4I	CCNGG	4 cut(s)	532, 715, 807, 948
StyI	CCWWGG	1 cut(s)	516
TaaI	ACNGT	2 cut(s)	346, 783
TaiI	ACGT	2 cut(s)	408, 806
TaqI	TCGA	5 cut(s)	29, 132, 152, 249, 264
TasI	AATT	6 cut(s)	94, 271, 293, 386, 525, 659
TfiI	GAWTC	7 cut(s)	31, 134, 395, 410, 469, 641, 792
Tru1I	TTAA	1 cut(s)	884
Tru9I	TTAA	1 cut(s)	884
TseI	GCWGC	3 cut(s)	575, 578, 878
TspDTI	ATGAA	1 cut(s)	138
TspGWI	ACGGA	1 cut(s)	620
Van91I	CCANNNNNTGG	1 cut(s)	911
VpaK11BI	GGWCC	1 cut(s)	686
XapI	RAATTY	3 cut(s)	271, 293, 659
XceI	RCATGY	1 cut(s)	833
XspI	CTAG	2 cut(s)	677, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.