Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011682

Physical Location & Seq

Genomic Coordinates Reverse (-)

18491084 .. 18492241

Gene Structure 1158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G49860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGACTTTGCAGCCTAATCTTCAAGCAAAAGAAATGGAGCTTTCTTTGGTAGGACTTCAAAATTCAGGAAAGACATCACTTGTTAATGTTGTTGCAACTGGTGAATACAGTGAAGACATGATTCCTACGGTCGGGTTTAACATGAGGAAAGTGACAAAAGAAAATGTTGCAATCAGACTATGGGATCTTGGTGGTCAACCAAGATTCCGCTGCATGTGGGAACGTTACTGTCGCGCTGTTTCTATGATTGTGTACGTAGTTGATGCTGCAGATACTGAAAACTTGAGTGTCTCGAGAAGTGAACTCCATGATTTGTTGAGCAATGCTTCGCTTATTGGTATTCCTCTTTTGGTTCTTGGGAACAAGATTGACATACATGGAGCTCTTTCCAAAGAAGCCTTGACAGAAGAAATGGGGCTTAGTTCGGTTACAAGTAGAGAAGTCTGCTGTCTCATGATATCCTGCAAGAACCCTACCACCATTGATCAGCTCACTGATTGGCTTGTAAATCACTCAAAATCAAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0002252 GO:0002376 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009615 GO:0012505 GO:0016020 GO:0017076 GO:0019001 GO:0030054 GO:0031090 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:0098542 GO:0098588 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

176

Amino Acids

19.49

Weight (kDa)

5.63

Isoelectric Point (pI)

29.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	8 - 171	6.5e-44	ADP-ribosylation factor family
Roc	PF08477	14 - 124	6.8e-16	Ras of Complex, Roc, domain of DAPkinase
SRPRB	PF09439	14 - 132	1.3e-07	Signal recognition particle receptor beta subunit
Ras	PF00071	15 - 170	3.6e-16	Ras family
MMR_HSR1	PF01926	15 - 121	1.9e-06	50S ribosome-binding GTPase
Gtr1_RagA	PF04670	16 - 134	4e-09	Gtr1/RagA G protein conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49860 AT3G49870 AT3G49870 AT5G67560
fragaria_vesca	FvH4_1g17760
malus_domestica	MD02G1186600.v1.1 MD15G1297800.v1.1
prunus_persica	Prupe.6G220000_v2.0.a1
pyrus_communis	pycom02g15170
rosa_chinensis	RchiOBHm_Chr2g0108091 RchiOBHm_Chr2g0108181
rosa_multiflora	Rmu_sc0001484.1_g000004
rosa_roxburghii	Rroxscaffold_2G00135640
rosa_rugosa	Rorug02G0150100
rosa_samantha	Rh2AG199400 Rh2BG212100 Rh2CG204000 Rh2DG207100
rosa_wichuraiana	Rw2G015820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	234
AciI	CCGC	1 cut(s)	208
AclI	AACGTT	1 cut(s)	223
AclWI	GGATC	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	61
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	23, 59
AluBI	AGCT	3 cut(s)	40, 383, 490
AluI	AGCT	3 cut(s)	40, 383, 490
Alw21I	GWGCWC	1 cut(s)	385
Alw26I	GTCTC	2 cut(s)	295, 455
AlwI	GGATC	1 cut(s)	192
AlwNI	CAGNNNCTG	1 cut(s)	275
Ama87I	CYCGRG	1 cut(s)	292
ApeKI	GCWGC	3 cut(s)	10, 210, 266
ApoI	RAATTY	1 cut(s)	61
AspLEI	GCGC	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	113
AvaI	CYCGRG	1 cut(s)	292
BanII	GRGCYC	1 cut(s)	385
BbsI	GAAGAC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	385
BbvI	GCAGC	3 cut(s)	22, 197, 253
BclI	TGATCA	1 cut(s)	484
BcoDI	GTCTC	2 cut(s)	295, 455
BfmI	CTRYAG	1 cut(s)	267
BisI	GCNGC	3 cut(s)	11, 211, 267
BlsI	GCNGC	3 cut(s)	12, 212, 268
BmeT110I	CYCGRG	1 cut(s)	292
BmsI	GCATC	1 cut(s)	253
BpiI	GAAGAC	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	304
BsaAI	YACGTR	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	103
Bse3DI	GCAATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMI	GCAATG	1 cut(s)	328
BseNI	ACTGG	1 cut(s)	103
BseXI	GCAGC	3 cut(s)	22, 197, 253
Bsh1236I	CGCG	1 cut(s)	234
Bsh1285I	CGRYCG	1 cut(s)	132
BsiEI	CGRYCG	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	385
BsiHKCI	CYCGRG	1 cut(s)	292
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmAI	GTCTC	2 cut(s)	295, 455
BsoBI	CYCGRG	1 cut(s)	292
Bsp1286I	GDGCHC	1 cut(s)	385
Bsp143I	GATC	2 cut(s)	184, 484
BspACI	CCGC	1 cut(s)	208
BspFNI	CGCG	1 cut(s)	234
BspHI	TCATGA	1 cut(s)	453
BspMAI	CTGCAG	1 cut(s)	271
BspPI	GGATC	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	103
BssMI	GATC	2 cut(s)	184, 484
Bst4CI	ACNGT	3 cut(s)	110, 130, 230
BstBAI	YACGTR	1 cut(s)	256
BstDEI	CTNAG	1 cut(s)	419
BstFNI	CGCG	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	2 cut(s)	187, 487
BstMAI	GTCTC	2 cut(s)	295, 455
BstMBI	GATC	2 cut(s)	184, 484
BstMCI	CGRYCG	1 cut(s)	132
BstNSI	RCATGY	1 cut(s)	217
BstSFI	CTRYAG	1 cut(s)	267
BstSNI	TACGTA	1 cut(s)	256
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	3 cut(s)	22, 197, 253
BstV2I	GAAGAC	1 cut(s)	120
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BtsIMutI	CAGTG	2 cut(s)	115, 492
CaiI	CAGNNNCTG	1 cut(s)	275
CciI	TCATGA	1 cut(s)	453
CfoI	GCGC	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	6 cut(s)	118, 142, 214, 308, 377, 454
CviJI	RGCY	7 cut(s)	13, 40, 383, 398, 418, 490, 502
CviKI_1	RGCY	7 cut(s)	13, 40, 383, 398, 418, 490, 502
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	1 cut(s)	419
DpnI	GATC	2 cut(s)	186, 486
DpnII	GATC	2 cut(s)	184, 484
Ecl136II	GAGCTC	1 cut(s)	383
Eco105I	TACGTA	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	385
Eco32I	GATATC	1 cut(s)	459
Eco53kI	GAGCTC	1 cut(s)	383
Eco88I	CYCGRG	1 cut(s)	292
EcoICRI	GAGCTC	1 cut(s)	383
EcoRV	GATATC	1 cut(s)	459
EcoT38I	GRGCYC	1 cut(s)	385
FaeI	CATG	6 cut(s)	121, 145, 217, 311, 380, 457
FaiI	YATR	9 cut(s)	119, 143, 181, 215, 245, 309, 374, 378, 455
FatI	CATG	6 cut(s)	117, 141, 213, 307, 376, 453
FbaI	TGATCA	1 cut(s)	484
Fnu4HI	GCNGC	3 cut(s)	11, 211, 267
FriOI	GRGCYC	1 cut(s)	385
Fsp4HI	GCNGC	3 cut(s)	11, 211, 267
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	3 cut(s)	11, 211, 267
HhaI	GCGC	1 cut(s)	236
Hin1II	CATG	6 cut(s)	121, 145, 217, 311, 380, 457
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HincII	GTYRAC	1 cut(s)	197
HindII	GTYRAC	1 cut(s)	197
HinfI	GANTC	2 cut(s)	121, 204
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	3 cut(s)	197, 253, 302
Hpy188I	TCNGA	1 cut(s)	176
Hpy188III	TCNNGA	4 cut(s)	66, 292, 294, 454
Hpy8I	GTNNAC	3 cut(s)	197, 253, 302
HpyCH4III	ACNGT	3 cut(s)	110, 130, 230
HpyCH4IV	ACGT	2 cut(s)	223, 255
HpyCH4V	TGCA	6 cut(s)	10, 95, 170, 213, 269, 465
HpyF3I	CTNAG	1 cut(s)	419
HpySE526I	ACGT	2 cut(s)	223, 255
Hsp92II	CATG	6 cut(s)	121, 145, 217, 311, 380, 457
HspAI	GCGC	1 cut(s)	234
Ksp22I	TGATCA	1 cut(s)	484
Kzo9I	GATC	2 cut(s)	184, 484
LmnI	GCTCC	2 cut(s)	37, 380
LpnPI	CCDG	3 cut(s)	51, 84, 475
Lsp1109I	GCAGC	3 cut(s)	22, 197, 253
LweI	GCATC	1 cut(s)	253
MaeII	ACGT	2 cut(s)	223, 255
MaeIII	GTNAC	3 cut(s)	151, 224, 427
MalI	GATC	2 cut(s)	186, 486
MboI	GATC	2 cut(s)	184, 484
MboII	GAAGA	3 cut(s)	11, 125, 419
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	385
MluCI	AATT	1 cut(s)	61
MnlI	CCTC	2 cut(s)	138, 354
MseI	TTAA	2 cut(s)	84, 138
MspA1I	CMGCKG	1 cut(s)	210
MvnI	CGCG	1 cut(s)	234
NdeII	GATC	2 cut(s)	184, 484
NlaIII	CATG	6 cut(s)	121, 145, 217, 311, 380, 457
NmuCI	GTSAC	1 cut(s)	151
NspI	RCATGY	1 cut(s)	217
PaeR7I	CTCGAG	1 cut(s)	292
PagI	TCATGA	1 cut(s)	453
PfeI	GAWTC	2 cut(s)	121, 204
PkrI	GCNGC	3 cut(s)	12, 212, 268
Ppu21I	YACGTR	1 cut(s)	256
Psp124BI	GAGCTC	1 cut(s)	385
Psp1406I	AACGTT	1 cut(s)	223
PstI	CTGCAG	1 cut(s)	271
PstNI	CAGNNNCTG	1 cut(s)	275
PsuI	RGATCY	1 cut(s)	184
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SacI	GAGCTC	1 cut(s)	385
SaqAI	TTAA	2 cut(s)	84, 138
SatI	GCNGC	3 cut(s)	11, 211, 267
Sau3AI	GATC	2 cut(s)	184, 484
SduI	GDGCHC	1 cut(s)	385
SetI	ASST	5 cut(s)	42, 226, 258, 385, 492
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	1 cut(s)	267
Sfr274I	CTCGAG	1 cut(s)	292
SlaI	CTCGAG	1 cut(s)	292
SmlI	CTYRAG	2 cut(s)	283, 292
SmoI	CTYRAG	2 cut(s)	283, 292
SnaBI	TACGTA	1 cut(s)	256
Sse9I	AATT	1 cut(s)	61
SsiI	CCGC	1 cut(s)	208
SstI	GAGCTC	1 cut(s)	385
TaaI	ACNGT	3 cut(s)	110, 130, 230
TaiI	ACGT	2 cut(s)	226, 258
TaqI	TCGA	1 cut(s)	293
TasI	AATT	1 cut(s)	61
TfiI	GAWTC	2 cut(s)	121, 204
Tru1I	TTAA	2 cut(s)	84, 138
Tru9I	TTAA	2 cut(s)	84, 138
TscAI	CASTG	2 cut(s)	115, 499
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	3 cut(s)	10, 210, 266
Tsp45I	GTSAC	1 cut(s)	151
TspRI	CASTG	2 cut(s)	115, 499
XapI	RAATTY	1 cut(s)	61
XceI	RCATGY	1 cut(s)	217
XhoI	CTCGAG	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.