Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0011682

Physical Location & Seq

Genomic Coordinates Forward (+)

19955939 .. 19959628

Gene Structure 3690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG212100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGATCCCTACGGTAGGATTCAATATGAAGAAGGTAACCAAAGGGAATGTTACAATAAAGTTGTGGGATCTTGGAGGTCAACCCAGGTTTCGTAGCATGTGGGAGCGATACTGTCGTGCGGTTTCTGCTATAGTCTATGTTGTTGATGCTGCTGATCCTGATAACTTGAGCACCTCAAGAGGGGAACTTCATGATTTGCTTAGCAAATCCTCACTTAATGGTATCCCATTGCTGATCCTGGGTAACAAGATTGATAAACCAGGAGCTCTGAGTAAACAAGCTTTGACTGATGAAATGGGGCTCAAGTCAATTACTGATAGAGAAGTGTGTTGCTTCATGATCTCATGCAAGAACTCAACCAACATAGACTCAGTTATTGATTGGCTTGTAAAGCATTCCAAATCAAAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0002252 GO:0002376 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009615 GO:0012505 GO:0016020 GO:0017076 GO:0019001 GO:0030054 GO:0031090 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:0098542 GO:0098588 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

137

Amino Acids

15.16

Weight (kDa)

9.12

Isoelectric Point (pI)

14.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	1 - 131	7.2e-39	ADP-ribosylation factor family
Ras	PF00071	3 - 132	5.4e-12	Ras family
Roc	PF08477	13 - 85	3.9e-09	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49860 AT3G49870 AT3G49870 AT5G67560
fragaria_vesca	FvH4_1g17760
malus_domestica	MD02G1186600.v1.1 MD15G1297800.v1.1
prunus_persica	Prupe.6G220000_v2.0.a1
pyrus_communis	pycom02g15170
rosa_chinensis	RchiOBHm_Chr2g0108091 RchiOBHm_Chr2g0108181
rosa_multiflora	Rmu_sc0001484.1_g000004
rosa_roxburghii	Rroxscaffold_2G00135640
rosa_rugosa	Rorug02G0150100
rosa_samantha	Rh2AG199400 Rh2BG212100 Rh2CG204000 Rh2DG207100
rosa_wichuraiana	Rw2G015820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	119
AclWI	GGATC	3 cut(s)	75, 149, 229
AfiI	CCNNNNNNNGG	2 cut(s)	14, 180
AgsI	TTSAA	1 cut(s)	22
AjnI	CCWGG	3 cut(s)	83, 237, 259
AluBI	AGCT	3 cut(s)	266, 281, 411
AluI	AGCT	3 cut(s)	266, 281, 411
Alw21I	GWGCWC	2 cut(s)	173, 268
AlwI	GGATC	3 cut(s)	75, 149, 229
ApeKI	GCWGC	1 cut(s)	149
BaeI	ACNNNNGTAYC	2 cut(s)	100, 133
BanII	GRGCYC	2 cut(s)	268, 303
Bbv12I	GWGCWC	2 cut(s)	173, 268
BbvI	GCAGC	1 cut(s)	136
BciT130I	CCWGG	3 cut(s)	85, 239, 261
BciVI	GTATCC	1 cut(s)	233
BfmI	CTRYAG	1 cut(s)	129
BfuI	GTATCC	1 cut(s)	233
BisI	GCNGC	1 cut(s)	150
BlpI	GCTNAGC	1 cut(s)	200
BlsI	GCNGC	1 cut(s)	151
Bme1390I	CCNGG	3 cut(s)	85, 239, 261
BmrFI	CCNGG	3 cut(s)	85, 239, 261
BmsI	GCATC	1 cut(s)	136
Bpu1102I	GCTNAGC	1 cut(s)	200
BpuEI	CTTGAG	3 cut(s)	160, 187, 287
BsaJI	CCNNGG	2 cut(s)	83, 238
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 180
Bse3DI	GCAATG	1 cut(s)	227
BseBI	CCWGG	3 cut(s)	85, 239, 261
BseDI	CCNNGG	2 cut(s)	83, 238
BseLI	CCNNNNNNNGG	2 cut(s)	14, 180
BseMI	GCAATG	1 cut(s)	227
BseMII	CTCAG	2 cut(s)	260, 384
BseXI	GCAGC	1 cut(s)	136
BsiHKAI	GWGCWC	2 cut(s)	173, 268
BslI	CCNNNNNNNGG	2 cut(s)	14, 180
BsmI	GAATGC	1 cut(s)	394
Bsp1286I	GDGCHC	3 cut(s)	173, 268, 303
Bsp143I	GATC	5 cut(s)	3, 67, 154, 234, 339
Bsp1720I	GCTNAGC	1 cut(s)	200
BspACI	CCGC	1 cut(s)	119
BspCNI	CTCAG	2 cut(s)	261, 383
BspHI	TCATGA	2 cut(s)	190, 336
BspPI	GGATC	3 cut(s)	75, 149, 229
BsrDI	GCAATG	1 cut(s)	227
BssECI	CCNNGG	2 cut(s)	83, 238
BssMI	GATC	5 cut(s)	3, 67, 154, 234, 339
Bst2UI	CCWGG	3 cut(s)	85, 239, 261
Bst4CI	ACNGT	2 cut(s)	13, 113
BstDEI	CTNAG	3 cut(s)	200, 269, 370
BstEII	GGTNACC	1 cut(s)	34
BstENI	CCTNNNNNAGG	1 cut(s)	12
BstKTI	GATC	5 cut(s)	6, 70, 157, 237, 342
BstMBI	GATC	5 cut(s)	3, 67, 154, 234, 339
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 391
BstNI	CCWGG	3 cut(s)	85, 239, 261
BstNSI	RCATGY	1 cut(s)	100
BstPI	GGTNACC	1 cut(s)	34
BstSCI	CCNGG	3 cut(s)	83, 237, 259
BstSFI	CTRYAG	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	136
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BsuI	GTATCC	1 cut(s)	233
CciI	TCATGA	2 cut(s)	190, 336
CviAII	CATG	4 cut(s)	97, 191, 337, 345
CviJI	RGCY	5 cut(s)	266, 281, 301, 385, 411
CviKI_1	RGCY	5 cut(s)	266, 281, 301, 385, 411
DdeI	CTNAG	3 cut(s)	200, 269, 370
DpnI	GATC	5 cut(s)	5, 69, 156, 236, 341
DpnII	GATC	5 cut(s)	3, 67, 154, 234, 339
Ecl136II	GAGCTC	1 cut(s)	266
Eco24I	GRGCYC	2 cut(s)	268, 303
Eco53kI	GAGCTC	1 cut(s)	266
Eco91I	GGTNACC	1 cut(s)	34
EcoICRI	GAGCTC	1 cut(s)	266
EcoNI	CCTNNNNNAGG	1 cut(s)	12
EcoO65I	GGTNACC	1 cut(s)	34
EcoRII	CCWGG	3 cut(s)	83, 237, 259
EcoT38I	GRGCYC	2 cut(s)	268, 303
FaeI	CATG	4 cut(s)	100, 194, 340, 348
FaiI	YATR	8 cut(s)	26, 98, 131, 138, 192, 338, 346, 365
FatI	CATG	4 cut(s)	96, 190, 336, 344
Fnu4HI	GCNGC	1 cut(s)	150
FriOI	GRGCYC	2 cut(s)	268, 303
Fsp4HI	GCNGC	1 cut(s)	150
GluI	GCNGC	1 cut(s)	150
Hin1II	CATG	4 cut(s)	100, 194, 340, 348
HincII	GTYRAC	1 cut(s)	80
HindII	GTYRAC	1 cut(s)	80
HindIII	AAGCTT	1 cut(s)	279
HinfI	GANTC	2 cut(s)	18, 368
Hpy166II	GTNNAC	2 cut(s)	80, 275
Hpy188I	TCNGA	1 cut(s)	270
Hpy188III	TCNNGA	4 cut(s)	158, 177, 191, 337
Hpy8I	GTNNAC	2 cut(s)	80, 275
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	2 cut(s)	13, 113
HpyCH4V	TGCA	1 cut(s)	348
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 391
HpyF3I	CTNAG	3 cut(s)	200, 269, 370
Hsp92II	CATG	4 cut(s)	100, 194, 340, 348
Kzo9I	GATC	5 cut(s)	3, 67, 154, 234, 339
LmnI	GCTCC	2 cut(s)	103, 263
LpnPI	CCDG	7 cut(s)	70, 97, 171, 224, 246, 251, 273
Lsp1109I	GCAGC	1 cut(s)	136
LweI	GCATC	1 cut(s)	136
MaeIII	GTNAC	3 cut(s)	34, 49, 242
MalI	GATC	5 cut(s)	5, 69, 156, 236, 341
MboI	GATC	5 cut(s)	3, 67, 154, 234, 339
MboII	GAAGA	1 cut(s)	40
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	3 cut(s)	173, 268, 303
MluCI	AATT	1 cut(s)	309
MlyI	GAGTC	1 cut(s)	362
MnlI	CCTC	4 cut(s)	68, 173, 184, 220
MseI	TTAA	1 cut(s)	216
MspR9I	CCNGG	3 cut(s)	85, 239, 261
Mva1269I	GAATGC	1 cut(s)	394
MvaI	CCWGG	3 cut(s)	85, 239, 261
MwoI	GCNNNNNNNGC	2 cut(s)	125, 391
NdeII	GATC	5 cut(s)	3, 67, 154, 234, 339
NlaIII	CATG	4 cut(s)	100, 194, 340, 348
NspI	RCATGY	1 cut(s)	100
PagI	TCATGA	2 cut(s)	190, 336
PctI	GAATGC	1 cut(s)	394
PfeI	GAWTC	1 cut(s)	18
PkrI	GCNGC	1 cut(s)	151
PleI	GAGTC	1 cut(s)	362
PpsI	GAGTC	1 cut(s)	362
Psp124BI	GAGCTC	1 cut(s)	268
Psp6I	CCWGG	3 cut(s)	83, 237, 259
PspEI	GGTNACC	1 cut(s)	34
PspGI	CCWGG	3 cut(s)	83, 237, 259
PsuI	RGATCY	1 cut(s)	67
SacI	GAGCTC	1 cut(s)	268
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	5 cut(s)	3, 67, 154, 234, 339
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	3 cut(s)	85, 239, 261
SduI	GDGCHC	3 cut(s)	173, 268, 303
SetI	ASST	7 cut(s)	36, 79, 89, 176, 268, 283, 413
SfaNI	GCATC	1 cut(s)	136
SfcI	CTRYAG	1 cut(s)	129
SmlI	CTYRAG	3 cut(s)	166, 175, 302
SmoI	CTYRAG	3 cut(s)	166, 175, 302
Sse9I	AATT	1 cut(s)	309
SsiI	CCGC	1 cut(s)	119
SstI	GAGCTC	1 cut(s)	268
StyD4I	CCNGG	3 cut(s)	83, 237, 259
TaaI	ACNGT	2 cut(s)	13, 113
TasI	AATT	1 cut(s)	309
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TseI	GCWGC	1 cut(s)	149
TspDTI	ATGAA	4 cut(s)	41, 179, 306, 325
XagI	CCTNNNNNAGG	1 cut(s)	12
XceI	RCATGY	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.