Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0011682

Physical Location & Seq

Genomic Coordinates Forward (+)

10329830 .. 10333328

Gene Structure 3499 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g17760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGGGGATGTGAATCATATTTATAGTGGATTCATTATTGGTAGGAAGGAAGAAGAACAGAGTAGGGAGGGAAAGGAAGAAGCTTTTTTCTTCTCCAAATCCAAAAAAGAGAGCTCTCTCGATTTGGAGGAGAGATCTTTCTCTCTCTCTATACACACATCACTGTATCGCCTCTCTCTGCAGATTCCTATAATGGGTTTGTGGGAGGCCTTTCTCAATTGGCTCCGTAGCCTCTTTTTCAAGCAGGAAATGGAGCTATCTTTGATAGGACTTCAGAATGCTGGAAAGACTTCTCTTGTAAATGTTGTTGCAACTGGCGGATACAGTGAGGACATGATCCCCACGGTAGGATTCAATATGAAGAAGGTAACCAAAGGGAATGTTACAATAAAGTTGTGGGATCTTGGAGGTCAACCCAGGTTTCGTAGCATGTGGGAGCGATACTGTCGTGCAGTTTCTGCTATAGTCTATGTTGTTGATGCTGCTGATCCTGATAACTTGAGCACCTCAAGAGGGGAGCTTCATGATTTGCTTAGCAAATCTTCACTTAATGGTATCCCATTGCTGATCCTGGGTAACAAGATTGATAAACCAGGAGCTCTGAGTAAACAAGCTTTGACTGATGAAATGGGACTCAAGTCAATTACTGATAGAGAAGTATGTTGCTTCATGATCTCATGCAAGAACTCCACCAACATAGACTCGGTTATTGATTGGCTTGTAAAGCATTCCAAATCAAAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0002252 GO:0002376 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009615 GO:0012505 GO:0016020 GO:0017076 GO:0019001 GO:0030054 GO:0031090 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:0098542 GO:0098588 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

249

Amino Acids

27.81

Weight (kDa)

7.65

Isoelectric Point (pI)

33.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	73 - 242	1.9e-46	ADP-ribosylation factor family
SRPRB	PF09439	86 - 209	1.2e-08	Signal recognition particle receptor beta subunit
Ras	PF00071	87 - 243	9.9e-18	Ras family
Roc	PF08477	87 - 196	1.3e-15	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	87 - 194	3.1e-06	50S ribosome-binding GTPase
Gtr1_RagA	PF04670	88 - 200	6.1e-09	Gtr1/RagA G protein conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49860 AT3G49870 AT3G49870 AT5G67560
fragaria_vesca	FvH4_1g17760
malus_domestica	MD02G1186600.v1.1 MD15G1297800.v1.1
prunus_persica	Prupe.6G220000_v2.0.a1
pyrus_communis	pycom02g15170
rosa_chinensis	RchiOBHm_Chr2g0108091 RchiOBHm_Chr2g0108181
rosa_multiflora	Rmu_sc0001484.1_g000004
rosa_roxburghii	Rroxscaffold_2G00135640
rosa_rugosa	Rorug02G0150100
rosa_samantha	Rh2AG199400 Rh2BG212100 Rh2CG204000 Rh2DG207100
rosa_wichuraiana	Rw2G015820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	318
AclWI	GGATC	4 cut(s)	331, 408, 482, 562
AcuI	CTGAAG	1 cut(s)	257
AfiI	CCNNNNNNNGG	3 cut(s)	194, 347, 513
AgsI	TTSAA	2 cut(s)	241, 355
AjnI	CCWGG	3 cut(s)	416, 570, 592
AluBI	AGCT	7 cut(s)	83, 114, 256, 520, 599, 614, 744
AluI	AGCT	7 cut(s)	83, 114, 256, 520, 599, 614, 744
Alw21I	GWGCWC	3 cut(s)	116, 506, 601
AlwI	GGATC	4 cut(s)	331, 408, 482, 562
AlwNI	CAGNNNCTG	1 cut(s)	458
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	1 cut(s)	482
Asp700I	GAANNNNTTC	1 cut(s)	289
BaeI	ACNNNNGTAYC	2 cut(s)	433, 466
BanII	GRGCYC	2 cut(s)	116, 601
Bbv12I	GWGCWC	3 cut(s)	116, 506, 601
BbvI	GCAGC	1 cut(s)	469
BciT130I	CCWGG	3 cut(s)	418, 572, 594
BciVI	GTATCC	2 cut(s)	314, 566
BfmI	CTRYAG	2 cut(s)	179, 462
BfuI	GTATCC	2 cut(s)	314, 566
BglII	AGATCT	1 cut(s)	134
BisI	GCNGC	1 cut(s)	483
BlpI	GCTNAGC	1 cut(s)	533
BlsI	GCNGC	1 cut(s)	484
Bme1390I	CCNGG	3 cut(s)	418, 572, 594
BmiI	GGNNCC	1 cut(s)	224
BmrFI	CCNGG	3 cut(s)	418, 572, 594
BmsI	GCATC	1 cut(s)	469
BoxI	GACNNNNGTC	1 cut(s)	637
Bpu1102I	GCTNAGC	1 cut(s)	533
BpuEI	CTTGAG	3 cut(s)	493, 520, 620
BsaBI	GATNNNNATC	1 cut(s)	12
BsaJI	CCNNGG	3 cut(s)	342, 416, 571
Bsc4I	CCNNNNNNNGG	3 cut(s)	194, 347, 513
Bse1I	ACTGG	1 cut(s)	319
Bse3DI	GCAATG	1 cut(s)	560
Bse8I	GATNNNNATC	1 cut(s)	12
BseBI	CCWGG	3 cut(s)	418, 572, 594
BseDI	CCNNGG	3 cut(s)	342, 416, 571
BseGI	GGATG	1 cut(s)	13
BseJI	GATNNNNATC	1 cut(s)	12
BseLI	CCNNNNNNNGG	3 cut(s)	194, 347, 513
BseMI	GCAATG	1 cut(s)	560
BseMII	CTCAG	1 cut(s)	593
BseNI	ACTGG	1 cut(s)	319
BseRI	GAGGAG	1 cut(s)	143
BseXI	GCAGC	1 cut(s)	469
BsgI	GTGCAG	1 cut(s)	471
BshFI	GGCC	1 cut(s)	209
BsiHKAI	GWGCWC	3 cut(s)	116, 506, 601
BslFI	GGGAC	1 cut(s)	645
BslI	CCNNNNNNNGG	3 cut(s)	194, 347, 513
BsmFI	GGGAC	1 cut(s)	645
BsmI	GAATGC	2 cut(s)	283, 727
BsnI	GGCC	1 cut(s)	209
Bsp1286I	GDGCHC	3 cut(s)	116, 506, 601
Bsp143I	GATC	6 cut(s)	134, 336, 400, 487, 567, 672
Bsp1720I	GCTNAGC	1 cut(s)	533
BspACI	CCGC	1 cut(s)	318
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	1 cut(s)	594
BspHI	TCATGA	2 cut(s)	523, 669
BspLI	GGNNCC	1 cut(s)	224
BspMAI	CTGCAG	1 cut(s)	183
BspPI	GGATC	4 cut(s)	331, 408, 482, 562
BsrDI	GCAATG	1 cut(s)	560
BsrI	ACTGG	1 cut(s)	319
BssECI	CCNNGG	3 cut(s)	342, 416, 571
BssMI	GATC	6 cut(s)	134, 336, 400, 487, 567, 672
Bst2UI	CCWGG	3 cut(s)	418, 572, 594
Bst4CI	ACNGT	4 cut(s)	165, 326, 346, 446
BstAPI	GCANNNNNTGC	1 cut(s)	458
BstDEI	CTNAG	2 cut(s)	533, 602
BstDSI	CCRYGG	1 cut(s)	342
BstEII	GGTNACC	1 cut(s)	367
BstF5I	GGATG	1 cut(s)	13
BstKTI	GATC	6 cut(s)	137, 339, 403, 490, 570, 675
BstMBI	GATC	6 cut(s)	134, 336, 400, 487, 567, 672
BstMWI	GCNNNNNNNGC	2 cut(s)	458, 724
BstNI	CCWGG	3 cut(s)	418, 572, 594
BstNSI	RCATGY	1 cut(s)	433
BstPAI	GACNNNNGTC	1 cut(s)	637
BstPI	GGTNACC	1 cut(s)	367
BstSCI	CCNGG	3 cut(s)	416, 570, 592
BstSFI	CTRYAG	2 cut(s)	179, 462
BstV1I	GCAGC	1 cut(s)	469
BstX2I	RGATCY	2 cut(s)	134, 400
BstYI	RGATCY	2 cut(s)	134, 400
BsuI	GTATCC	2 cut(s)	314, 566
BsuRI	GGCC	1 cut(s)	209
BtgI	CCRYGG	1 cut(s)	342
BtsCI	GGATG	1 cut(s)	13
BtsIMutI	CAGTG	2 cut(s)	161, 331
CaiI	CAGNNNCTG	1 cut(s)	458
CciI	TCATGA	2 cut(s)	523, 669
CviAII	CATG	5 cut(s)	334, 430, 524, 670, 678
DdeI	CTNAG	2 cut(s)	533, 602
DpnI	GATC	6 cut(s)	136, 338, 402, 489, 569, 674
DpnII	GATC	6 cut(s)	134, 336, 400, 487, 567, 672
EciI	GGCGGA	1 cut(s)	333
Ecl136II	GAGCTC	2 cut(s)	114, 599
Eco147I	AGGCCT	1 cut(s)	209
Eco24I	GRGCYC	2 cut(s)	116, 601
Eco53kI	GAGCTC	2 cut(s)	114, 599
Eco57I	CTGAAG	1 cut(s)	257
Eco91I	GGTNACC	1 cut(s)	367
EcoICRI	GAGCTC	2 cut(s)	114, 599
EcoO65I	GGTNACC	1 cut(s)	367
EcoRII	CCWGG	3 cut(s)	416, 570, 592
EcoT38I	GRGCYC	2 cut(s)	116, 601
FaeI	CATG	5 cut(s)	337, 433, 527, 673, 681
FaqI	GGGAC	1 cut(s)	645
FatI	CATG	5 cut(s)	333, 429, 523, 669, 677
Fnu4HI	GCNGC	1 cut(s)	483
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	2 cut(s)	116, 601
Fsp4HI	GCNGC	1 cut(s)	483
GluI	GCNGC	1 cut(s)	483
HaeIII	GGCC	1 cut(s)	209
Hin1II	CATG	5 cut(s)	337, 433, 527, 673, 681
HincII	GTYRAC	1 cut(s)	413
HindII	GTYRAC	1 cut(s)	413
HindIII	AAGCTT	2 cut(s)	81, 612
HinfI	GANTC	6 cut(s)	13, 30, 184, 351, 633, 701
Hpy166II	GTNNAC	2 cut(s)	413, 608
Hpy188I	TCNGA	2 cut(s)	276, 603
Hpy188III	TCNNGA	5 cut(s)	119, 491, 510, 524, 670
Hpy8I	GTNNAC	2 cut(s)	413, 608
HpyAV	CCTTC	2 cut(s)	40, 358
HpyCH4III	ACNGT	4 cut(s)	165, 326, 346, 446
HpyCH4V	TGCA	4 cut(s)	181, 311, 452, 681
HpyF10VI	GCNNNNNNNGC	2 cut(s)	458, 724
HpyF3I	CTNAG	2 cut(s)	533, 602
Hsp92II	CATG	5 cut(s)	337, 433, 527, 673, 681
Kzo9I	GATC	6 cut(s)	134, 336, 400, 487, 567, 672
LmnI	GCTCC	5 cut(s)	228, 253, 436, 517, 596
Lsp1109I	GCAGC	1 cut(s)	469
LweI	GCATC	1 cut(s)	469
MaeIII	GTNAC	3 cut(s)	367, 382, 575
MalI	GATC	6 cut(s)	136, 338, 402, 489, 569, 674
MboI	GATC	6 cut(s)	134, 336, 400, 487, 567, 672
MboII	GAAGA	6 cut(s)	62, 65, 82, 89, 373, 534
MfeI	CAATTG	1 cut(s)	217
MflI	RGATCY	2 cut(s)	134, 400
MhlI	GDGCHC	3 cut(s)	116, 506, 601
MluCI	AATT	2 cut(s)	217, 642
MlyI	GAGTC	2 cut(s)	627, 695
MnlI	CCTC	9 cut(s)	61, 121, 182, 199, 242, 322, 401, 506, 517
MroXI	GAANNNNTTC	1 cut(s)	289
MseI	TTAA	1 cut(s)	549
MspR9I	CCNGG	3 cut(s)	418, 572, 594
MunI	CAATTG	1 cut(s)	217
Mva1269I	GAATGC	2 cut(s)	283, 727
MvaI	CCWGG	3 cut(s)	418, 572, 594
MwoI	GCNNNNNNNGC	2 cut(s)	458, 724
NdeII	GATC	6 cut(s)	134, 336, 400, 487, 567, 672
NlaIII	CATG	5 cut(s)	337, 433, 527, 673, 681
NlaIV	GGNNCC	1 cut(s)	224
NspI	RCATGY	1 cut(s)	433
PagI	TCATGA	2 cut(s)	523, 669
PceI	AGGCCT	1 cut(s)	209
PctI	GAATGC	2 cut(s)	283, 727
PdmI	GAANNNNTTC	1 cut(s)	289
PfeI	GAWTC	4 cut(s)	13, 30, 184, 351
PkrI	GCNGC	1 cut(s)	484
PleI	GAGTC	2 cut(s)	627, 695
PpsI	GAGTC	2 cut(s)	627, 695
PshAI	GACNNNNGTC	1 cut(s)	637
Psp124BI	GAGCTC	2 cut(s)	116, 601
Psp6I	CCWGG	3 cut(s)	416, 570, 592
PspEI	GGTNACC	1 cut(s)	367
PspGI	CCWGG	3 cut(s)	416, 570, 592
PspN4I	GGNNCC	1 cut(s)	224
PstI	CTGCAG	1 cut(s)	183
PstNI	CAGNNNCTG	1 cut(s)	458
PsuI	RGATCY	2 cut(s)	134, 400
SacI	GAGCTC	2 cut(s)	116, 601
SaqAI	TTAA	1 cut(s)	549
SatI	GCNGC	1 cut(s)	483
Sau3AI	GATC	6 cut(s)	134, 336, 400, 487, 567, 672
SchI	GAGTC	2 cut(s)	627, 695
ScrFI	CCNGG	3 cut(s)	418, 572, 594
SduI	GDGCHC	3 cut(s)	116, 506, 601
SfaNI	GCATC	1 cut(s)	469
SfcI	CTRYAG	2 cut(s)	179, 462
SmlI	CTYRAG	3 cut(s)	499, 508, 635
SmoI	CTYRAG	3 cut(s)	499, 508, 635
Sse9I	AATT	2 cut(s)	217, 642
SseBI	AGGCCT	1 cut(s)	209
SsiI	CCGC	1 cut(s)	318
SstI	GAGCTC	2 cut(s)	116, 601
StuI	AGGCCT	1 cut(s)	209
StyD4I	CCNGG	3 cut(s)	416, 570, 592
TaaI	ACNGT	4 cut(s)	165, 326, 346, 446
TaqI	TCGA	1 cut(s)	120
TasI	AATT	2 cut(s)	217, 642
TfiI	GAWTC	4 cut(s)	13, 30, 184, 351
Tru1I	TTAA	1 cut(s)	549
Tru9I	TTAA	1 cut(s)	549
TscAI	CASTG	2 cut(s)	168, 331
TseI	GCWGC	1 cut(s)	482
TspDTI	ATGAA	5 cut(s)	22, 374, 512, 639, 658
TspGWI	ACGGA	1 cut(s)	215
TspRI	CASTG	2 cut(s)	168, 331
XceI	RCATGY	1 cut(s)	433
XmnI	GAANNNNTTC	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.