Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0011682

Physical Location & Seq

Genomic Coordinates Forward (+)

28085430 .. 28088290

Gene Structure 2861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1297800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGGTTTGTGGGAAGCTTTTCTCAATTGGCTCCGCAGCCTCTTTTTCAAGCAGGAAATGGAACTATCTTTGATAGGACTTCAGAATGCTGGAAAGACTTCTCTTGTAAATGTTGTTGCAACGGGCGGATACAGTGAGGACATGATTCCTACGGTAGGATTCAATATGAAGAAGGTAACCAAAGGGAATGTTACAATAAAGTTGTGGGATCTTGGAGGTCAACCCAGGTTCCGCAGCATGTGGGAGCGATACTGTCGTGCTGTTTCTGCTATAGTTTATGTTGTTGATGCTGCCGATCCAGATAACATGAACGTCTCAAAAAGTGAGCTTCATGATTTGCTGAGCAAAAACTCACTAAGCGGGATCCCACTACTGGTCCTTGGAAACAAGATTGACAAGCCGGGAGCTCTCAGTAAACAGGCATTGACTGATGAAATGGGACTCAAGTCGATTTCAGACAGAGAAGTTTGTTGCTTCATGATCTCATGCAAGAACTCAACGAACATCGATTCAGTTATCGATTGGCTTGTAAAGCATTCCAAATCAAAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0002252 GO:0002376 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009615 GO:0012505 GO:0016020 GO:0017076 GO:0019001 GO:0030054 GO:0031090 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:0098542 GO:0098588 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

185

Amino Acids

20.42

Weight (kDa)

8.64

Isoelectric Point (pI)

22.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 178	1.6e-47	ADP-ribosylation factor family
Roc	PF08477	22 - 132	2.5e-16	Ras of Complex, Roc, domain of DAPkinase
SRPRB	PF09439	22 - 145	1.4e-07	Signal recognition particle receptor beta subunit
Ras	PF00071	23 - 179	5.3e-18	Ras family
MMR_HSR1	PF01926	23 - 130	1.2e-06	50S ribosome-binding GTPase
Gtr1_RagA	PF04670	24 - 145	9.5e-10	Gtr1/RagA G protein conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49860 AT3G49870 AT3G49870 AT5G67560
fragaria_vesca	FvH4_1g17760
malus_domestica	MD02G1186600.v1.1 MD15G1297800.v1.1
prunus_persica	Prupe.6G220000_v2.0.a1
pyrus_communis	pycom02g15170
rosa_chinensis	RchiOBHm_Chr2g0108091 RchiOBHm_Chr2g0108181
rosa_multiflora	Rmu_sc0001484.1_g000004
rosa_roxburghii	Rroxscaffold_2G00135640
rosa_rugosa	Rorug02G0150100
rosa_samantha	Rh2AG199400 Rh2BG212100 Rh2CG204000 Rh2DG207100
rosa_wichuraiana	Rw2G015820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	34, 126, 232, 360
AclWI	GGATC	4 cut(s)	216, 290, 358, 371
AcuI	CTGAAG	1 cut(s)	65
AfiI	CCNNNNNNNGG	2 cut(s)	155, 373
AgsI	TTSAA	2 cut(s)	49, 163
AjnI	CCWGG	1 cut(s)	224
AluBI	AGCT	4 cut(s)	17, 328, 407, 552
AluI	AGCT	4 cut(s)	17, 328, 407, 552
Alw21I	GWGCWC	1 cut(s)	409
Alw26I	GTCTC	1 cut(s)	319
AlwI	GGATC	4 cut(s)	216, 290, 358, 371
ApeKI	GCWGC	3 cut(s)	36, 234, 290
Asp700I	GAANNNNTTC	2 cut(s)	18, 97
AspS9I	GGNCC	1 cut(s)	376
AsuC2I	CCSGG	1 cut(s)	402
AvaII	GGWCC	1 cut(s)	376
BaeI	ACNNNNGTAYC	2 cut(s)	241, 274
BamHI	GGATCC	1 cut(s)	363
BanII	GRGCYC	1 cut(s)	409
Bbv12I	GWGCWC	1 cut(s)	409
BbvI	GCAGC	3 cut(s)	48, 246, 277
BciT130I	CCWGG	1 cut(s)	226
BciVI	GTATCC	1 cut(s)	122
BcnI	CCSGG	1 cut(s)	402
BcoDI	GTCTC	1 cut(s)	319
BfmI	CTRYAG	1 cut(s)	270
BfuI	GTATCC	1 cut(s)	122
BisI	GCNGC	3 cut(s)	37, 235, 291
BlpI	GCTNAGC	1 cut(s)	341
BlsI	GCNGC	3 cut(s)	38, 236, 292
Bme1390I	CCNGG	2 cut(s)	226, 402
Bme18I	GGWCC	1 cut(s)	376
BmgT120I	GGNCC	1 cut(s)	376
BmiI	GGNNCC	3 cut(s)	32, 230, 365
BmrFI	CCNGG	2 cut(s)	226, 402
BmsI	GCATC	1 cut(s)	277
BoxI	GACNNNNGTC	1 cut(s)	445
Bpu1102I	GCTNAGC	1 cut(s)	341
BpuEI	CTTGAG	1 cut(s)	428
BpuMI	CCSGG	1 cut(s)	402
Bsa29I	ATCGAT	2 cut(s)	507, 519
BsaJI	CCNNGG	2 cut(s)	224, 379
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 373
Bse1I	ACTGG	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	226
BseCI	ATCGAT	2 cut(s)	507, 519
BseDI	CCNNGG	2 cut(s)	224, 379
BseLI	CCNNNNNNNGG	2 cut(s)	155, 373
BseMII	CTCAG	2 cut(s)	332, 424
BseNI	ACTGG	1 cut(s)	378
BseXI	GCAGC	3 cut(s)	48, 246, 277
BshVI	ATCGAT	2 cut(s)	507, 519
BsiHKAI	GWGCWC	1 cut(s)	409
BsiSI	CCGG	1 cut(s)	401
BslFI	GGGAC	1 cut(s)	453
BslI	CCNNNNNNNGG	2 cut(s)	155, 373
BsmAI	GTCTC	1 cut(s)	319
BsmBI	CGTCTC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	453
BsmI	GAATGC	2 cut(s)	91, 535
Bsp1286I	GDGCHC	1 cut(s)	409
Bsp143I	GATC	4 cut(s)	208, 295, 363, 480
Bsp1720I	GCTNAGC	1 cut(s)	341
BspACI	CCGC	4 cut(s)	34, 126, 232, 360
BspCNI	CTCAG	2 cut(s)	333, 423
BspDI	ATCGAT	2 cut(s)	507, 519
BspHI	TCATGA	2 cut(s)	331, 477
BspLI	GGNNCC	3 cut(s)	32, 230, 365
BspPI	GGATC	4 cut(s)	216, 290, 358, 371
BsrI	ACTGG	1 cut(s)	378
BssECI	CCNNGG	2 cut(s)	224, 379
BssMI	GATC	4 cut(s)	208, 295, 363, 480
BssT1I	CCWWGG	1 cut(s)	379
Bst2UI	CCWGG	1 cut(s)	226
Bst4CI	ACNGT	3 cut(s)	134, 154, 254
BstDEI	CTNAG	3 cut(s)	341, 356, 410
BstEII	GGTNACC	1 cut(s)	175
BstENI	CCTNNNNNAGG	1 cut(s)	153
BstKTI	GATC	4 cut(s)	211, 298, 366, 483
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	4 cut(s)	208, 295, 363, 480
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 532
BstNI	CCWGG	1 cut(s)	226
BstNSI	RCATGY	1 cut(s)	241
BstPAI	GACNNNNGTC	1 cut(s)	445
BstPI	GGTNACC	1 cut(s)	175
BstSCI	CCNGG	2 cut(s)	224, 400
BstSFI	CTRYAG	1 cut(s)	270
BstV1I	GCAGC	3 cut(s)	48, 246, 277
BstX2I	RGATCY	2 cut(s)	208, 363
BstYI	RGATCY	2 cut(s)	208, 363
Bsu15I	ATCGAT	2 cut(s)	507, 519
BsuI	GTATCC	1 cut(s)	122
BsuTUI	ATCGAT	2 cut(s)	507, 519
BtsIMutI	CAGTG	1 cut(s)	139
CciI	TCATGA	2 cut(s)	331, 477
Cfr13I	GGNCC	1 cut(s)	376
ClaI	ATCGAT	2 cut(s)	507, 519
CviAII	CATG	6 cut(s)	142, 238, 307, 332, 478, 486
CviJI	RGCY	8 cut(s)	17, 31, 39, 328, 400, 407, 526, 552
CviKI_1	RGCY	8 cut(s)	17, 31, 39, 328, 400, 407, 526, 552
DdeI	CTNAG	3 cut(s)	341, 356, 410
DpnI	GATC	4 cut(s)	210, 297, 365, 482
DpnII	GATC	4 cut(s)	208, 295, 363, 480
EciI	GGCGGA	1 cut(s)	141
Ecl136II	GAGCTC	1 cut(s)	407
Eco130I	CCWWGG	1 cut(s)	379
Eco24I	GRGCYC	1 cut(s)	409
Eco47I	GGWCC	1 cut(s)	376
Eco53kI	GAGCTC	1 cut(s)	407
Eco57I	CTGAAG	1 cut(s)	65
Eco91I	GGTNACC	1 cut(s)	175
EcoICRI	GAGCTC	1 cut(s)	407
EcoNI	CCTNNNNNAGG	1 cut(s)	153
EcoO65I	GGTNACC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	379
Esp3I	CGTCTC	1 cut(s)	319
FaeI	CATG	6 cut(s)	145, 241, 310, 335, 481, 489
FaiI	YATR	9 cut(s)	143, 167, 239, 272, 279, 308, 333, 479, 487
FaqI	GGGAC	1 cut(s)	453
FatI	CATG	6 cut(s)	141, 237, 306, 331, 477, 485
FauI	CCCGC	1 cut(s)	353
Fnu4HI	GCNGC	3 cut(s)	37, 235, 291
FriOI	GRGCYC	1 cut(s)	409
Fsp4HI	GCNGC	3 cut(s)	37, 235, 291
GluI	GCNGC	3 cut(s)	37, 235, 291
HapII	CCGG	1 cut(s)	401
Hin1II	CATG	6 cut(s)	145, 241, 310, 335, 481, 489
HincII	GTYRAC	1 cut(s)	221
HindII	GTYRAC	1 cut(s)	221
HindIII	AAGCTT	1 cut(s)	15
HinfI	GANTC	4 cut(s)	145, 159, 441, 509
HpaII	CCGG	1 cut(s)	401
Hpy166II	GTNNAC	2 cut(s)	221, 416
Hpy188I	TCNGA	2 cut(s)	84, 457
Hpy188III	TCNNGA	3 cut(s)	299, 332, 478
Hpy8I	GTNNAC	2 cut(s)	221, 416
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	3 cut(s)	134, 154, 254
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	2 cut(s)	119, 489
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 532
HpyF3I	CTNAG	3 cut(s)	341, 356, 410
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	6 cut(s)	145, 241, 310, 335, 481, 489
Kzo9I	GATC	4 cut(s)	208, 295, 363, 480
LmnI	GCTCC	3 cut(s)	36, 244, 404
LpnPI	CCDG	8 cut(s)	38, 75, 211, 238, 312, 359, 404, 414
Lsp1109I	GCAGC	3 cut(s)	48, 246, 277
LweI	GCATC	1 cut(s)	277
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	2 cut(s)	175, 190
MalI	GATC	4 cut(s)	210, 297, 365, 482
MboI	GATC	4 cut(s)	208, 295, 363, 480
MboII	GAAGA	1 cut(s)	181
MfeI	CAATTG	1 cut(s)	25
MflI	RGATCY	2 cut(s)	208, 363
MhlI	GDGCHC	1 cut(s)	409
MluCI	AATT	1 cut(s)	25
MlyI	GAGTC	1 cut(s)	435
MnlI	CCTC	3 cut(s)	50, 130, 209
MroXI	GAANNNNTTC	2 cut(s)	18, 97
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	2 cut(s)	226, 402
MunI	CAATTG	1 cut(s)	25
Mva1269I	GAATGC	2 cut(s)	91, 535
MvaI	CCWGG	1 cut(s)	226
MwoI	GCNNNNNNNGC	2 cut(s)	266, 532
NciI	CCSGG	1 cut(s)	402
NdeII	GATC	4 cut(s)	208, 295, 363, 480
NlaIII	CATG	6 cut(s)	145, 241, 310, 335, 481, 489
NlaIV	GGNNCC	3 cut(s)	32, 230, 365
NspI	RCATGY	1 cut(s)	241
PagI	TCATGA	2 cut(s)	331, 477
PctI	GAATGC	2 cut(s)	91, 535
PdmI	GAANNNNTTC	2 cut(s)	18, 97
PfeI	GAWTC	3 cut(s)	145, 159, 509
PkrI	GCNGC	3 cut(s)	38, 236, 292
PleI	GAGTC	1 cut(s)	435
PpsI	GAGTC	1 cut(s)	435
PshAI	GACNNNNGTC	1 cut(s)	445
Psp124BI	GAGCTC	1 cut(s)	409
Psp6I	CCWGG	1 cut(s)	224
PspEI	GGTNACC	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	3 cut(s)	32, 230, 365
PspPI	GGNCC	1 cut(s)	376
PsuI	RGATCY	2 cut(s)	208, 363
SacI	GAGCTC	1 cut(s)	409
SatI	GCNGC	3 cut(s)	37, 235, 291
Sau3AI	GATC	4 cut(s)	208, 295, 363, 480
Sau96I	GGNCC	1 cut(s)	376
SchI	GAGTC	1 cut(s)	435
ScrFI	CCNGG	2 cut(s)	226, 402
SduI	GDGCHC	1 cut(s)	409
SetI	ASST	8 cut(s)	19, 177, 220, 230, 315, 330, 409, 554
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	1 cut(s)	270
SinI	GGWCC	1 cut(s)	376
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	1 cut(s)	25
SsiI	CCGC	4 cut(s)	34, 126, 232, 360
SstI	GAGCTC	1 cut(s)	409
StyD4I	CCNGG	2 cut(s)	224, 400
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	3 cut(s)	134, 154, 254
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	3 cut(s)	449, 507, 519
TasI	AATT	1 cut(s)	25
TfiI	GAWTC	3 cut(s)	145, 159, 509
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	3 cut(s)	36, 234, 290
TspDTI	ATGAA	5 cut(s)	182, 320, 323, 447, 466
TspRI	CASTG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	376
XagI	CCTNNNNNAGG	1 cut(s)	153
XceI	RCATGY	1 cut(s)	241
XmnI	GAANNNNTTC	2 cut(s)	18, 97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.