Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0011682

Physical Location & Seq

Genomic Coordinates Forward (+)

11857423 .. 11857764

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g15170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGAGTGTATCAAGCAGTGAGCTTCATGATTTGCTCAGCAAAAACTCACTAAGCGGGATCCCACTACTGGTTCTCGGAAACAAGATTGACAAGCCGGGAGCTCTCAGTAAACAGGCATTAACTGATGAAATGGGACTGAAATCGATTACCGATAGAGAAGTTGGTTGCTTCATGATCTCATGCAAGAACTCAACCAACATCGACTCAGTTATCGATTGGCTTGTAAAGCATTCGAAATCAAAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0002252 GO:0002376 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009615 GO:0012505 GO:0016020 GO:0017076 GO:0019001 GO:0030054 GO:0031090 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:0098542 GO:0098588 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

83

Amino Acids

8.85

Weight (kDa)

7.79

Isoelectric Point (pI)

29.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49860 AT3G49870 AT3G49870 AT5G67560
fragaria_vesca	FvH4_1g17760
malus_domestica	MD02G1186600.v1.1 MD15G1297800.v1.1
prunus_persica	Prupe.6G220000_v2.0.a1
pyrus_communis	pycom02g15170
rosa_chinensis	RchiOBHm_Chr2g0108091 RchiOBHm_Chr2g0108181
rosa_multiflora	Rmu_sc0001484.1_g000004
rosa_roxburghii	Rroxscaffold_2G00135640
rosa_rugosa	Rorug02G0150100
rosa_samantha	Rh2AG199400 Rh2BG212100 Rh2CG204000 Rh2DG207100
rosa_wichuraiana	Rw2G015820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	54
AclWI	GGATC	2 cut(s)	52, 65
AfiI	CCNNNNNNNGG	1 cut(s)	67
AluBI	AGCT	3 cut(s)	22, 101, 246
AluI	AGCT	3 cut(s)	22, 101, 246
Alw21I	GWGCWC	1 cut(s)	103
AlwI	GGATC	2 cut(s)	52, 65
AsuC2I	CCSGG	1 cut(s)	96
AsuII	TTCGAA	1 cut(s)	233
BamHI	GGATCC	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	103
Bbv12I	GWGCWC	1 cut(s)	103
BcnI	CCSGG	1 cut(s)	96
BlpI	GCTNAGC	1 cut(s)	35
Bme1390I	CCNGG	1 cut(s)	96
BmiI	GGNNCC	1 cut(s)	59
BmrFI	CCNGG	1 cut(s)	96
Bpu1102I	GCTNAGC	1 cut(s)	35
Bpu14I	TTCGAA	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	96
Bsa29I	ATCGAT	2 cut(s)	143, 213
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	72
BseCI	ATCGAT	2 cut(s)	143, 213
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMII	CTCAG	3 cut(s)	49, 118, 219
BseNI	ACTGG	1 cut(s)	72
BshVI	ATCGAT	2 cut(s)	143, 213
BsiHKAI	GWGCWC	1 cut(s)	103
BsiSI	CCGG	1 cut(s)	95
BslFI	GGGAC	1 cut(s)	147
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	147
BsmI	GAATGC	1 cut(s)	229
Bsp119I	TTCGAA	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	2 cut(s)	57, 174
Bsp1720I	GCTNAGC	1 cut(s)	35
BspACI	CCGC	1 cut(s)	54
BspCNI	CTCAG	3 cut(s)	48, 117, 218
BspDI	ATCGAT	2 cut(s)	143, 213
BspHI	TCATGA	2 cut(s)	25, 171
BspLI	GGNNCC	1 cut(s)	59
BspPI	GGATC	2 cut(s)	52, 65
BspT104I	TTCGAA	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	72
BssMI	GATC	2 cut(s)	57, 174
BstBI	TTCGAA	1 cut(s)	233
BstDEI	CTNAG	4 cut(s)	35, 50, 104, 205
BstKTI	GATC	2 cut(s)	60, 177
BstMBI	GATC	2 cut(s)	57, 174
BstMWI	GCNNNNNNNGC	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	94
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
Bsu15I	ATCGAT	2 cut(s)	143, 213
BsuTUI	ATCGAT	2 cut(s)	143, 213
BtsI	GCAGTG	1 cut(s)	22
BtsIMutI	CAGTG	1 cut(s)	22
CciI	TCATGA	2 cut(s)	25, 171
ClaI	ATCGAT	2 cut(s)	143, 213
CviAII	CATG	3 cut(s)	26, 172, 180
CviJI	RGCY	5 cut(s)	22, 94, 101, 220, 246
CviKI_1	RGCY	5 cut(s)	22, 94, 101, 220, 246
DdeI	CTNAG	4 cut(s)	35, 50, 104, 205
DpnI	GATC	2 cut(s)	59, 176
DpnII	GATC	2 cut(s)	57, 174
Ecl136II	GAGCTC	1 cut(s)	101
Eco24I	GRGCYC	1 cut(s)	103
Eco53kI	GAGCTC	1 cut(s)	101
EcoICRI	GAGCTC	1 cut(s)	101
EcoT38I	GRGCYC	1 cut(s)	103
FaeI	CATG	3 cut(s)	29, 175, 183
FaiI	YATR	3 cut(s)	27, 173, 181
FaqI	GGGAC	1 cut(s)	147
FatI	CATG	3 cut(s)	25, 171, 179
FauI	CCCGC	1 cut(s)	47
FriOI	GRGCYC	1 cut(s)	103
HapII	CCGG	1 cut(s)	95
Hin1II	CATG	3 cut(s)	29, 175, 183
HinfI	GANTC	1 cut(s)	203
HpaII	CCGG	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	1 cut(s)	77
Hpy188III	TCNNGA	2 cut(s)	26, 172
Hpy8I	GTNNAC	1 cut(s)	110
HpyCH4V	TGCA	1 cut(s)	183
HpyF10VI	GCNNNNNNNGC	1 cut(s)	226
HpyF3I	CTNAG	4 cut(s)	35, 50, 104, 205
Hsp92II	CATG	3 cut(s)	29, 175, 183
Kzo9I	GATC	2 cut(s)	57, 174
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	3 cut(s)	53, 98, 108
MalI	GATC	2 cut(s)	59, 176
MboI	GATC	2 cut(s)	57, 174
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	1 cut(s)	103
MlyI	GAGTC	1 cut(s)	197
MseI	TTAA	1 cut(s)	119
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	96
Mva1269I	GAATGC	1 cut(s)	229
MwoI	GCNNNNNNNGC	1 cut(s)	226
NciI	CCSGG	1 cut(s)	96
NdeII	GATC	2 cut(s)	57, 174
NlaIII	CATG	3 cut(s)	29, 175, 183
NlaIV	GGNNCC	1 cut(s)	59
NspV	TTCGAA	1 cut(s)	233
PagI	TCATGA	2 cut(s)	25, 171
PctI	GAATGC	1 cut(s)	229
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
Psp124BI	GAGCTC	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	59
PsuI	RGATCY	1 cut(s)	57
SacI	GAGCTC	1 cut(s)	103
SaqAI	TTAA	1 cut(s)	119
Sau3AI	GATC	2 cut(s)	57, 174
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	96
SduI	GDGCHC	1 cut(s)	103
SetI	ASST	3 cut(s)	24, 103, 248
SfuI	TTCGAA	1 cut(s)	233
SsiI	CCGC	1 cut(s)	54
SstI	GAGCTC	1 cut(s)	103
StyD4I	CCNGG	1 cut(s)	94
TaqI	TCGA	4 cut(s)	143, 201, 213, 233
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TscAI	CASTG	1 cut(s)	22
TspDTI	ATGAA	3 cut(s)	14, 141, 160
TspRI	CASTG	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.