Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011682

Physical Location & Seq

Genomic Coordinates Reverse (-)

18492274 .. 18494285

Gene Structure 2012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G49870.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGGTTTGTTGGAAGCTTTTCTCAATTGGCTTCGTAGCCTCTTCTTCAAGCAAGAAATGGAGCTTTCTTTGATAGGACTTCAAAATGCAGGAAAGACATCACTTGTAAATGTTGTTGCAACTGGTGGATACAGTGAAGACATGATTCCTACGGTCGGGTTTAACATGAGGAAAGTAACAAAAGGAAATGTTACAATCAAACTATGGGATCTTGGTGGTCAACCAAGATTCCGCAGCATGTGGGAACGTTACTGTCGCGCTGTTTCTGCCATTGTGTATGTAGTTGATGCTGCAGATCCTGACAACCTAAGTGTGTCGAAAAGTGAACTCCATGATTTGTTGAGCAAGACTTCGCTTAATGGTATCCCTCTTCTCGTTCTTGGGAACAAGATTGACAAACCTGGAGCTCTGTCCAAAGAAGCCTTAACAGACGAAATGGGACTTACATCACTTACAGATAGAGAAGTCTGCTGTTTCATGATATCATGCAAGAACTCTACCAACATTGATCAAGTCATTGATTGGCTCGTAAAGCATTCAAAGTCGAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0002252 GO:0002376 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009615 GO:0012505 GO:0016020 GO:0017076 GO:0019001 GO:0030054 GO:0031090 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:0098542 GO:0098588 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

184

Amino Acids

20.4

Weight (kDa)

7.64

Isoelectric Point (pI)

17.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Roc	PF08477	3 - 113	5.5e-16	Ras of Complex, Roc, domain of DAPkinase
Arf	PF00025	4 - 159	8.2e-45	ADP-ribosylation factor family
Ras	PF00071	4 - 160	3.9e-18	Ras family
MMR_HSR1	PF01926	4 - 111	5.5e-07	50S ribosome-binding GTPase
Gtr1_RagA	PF04670	5 - 120	1.6e-09	Gtr1/RagA G protein conserved region
SRPRB	PF09439	5 - 126	4.8e-08	Signal recognition particle receptor beta subunit
GTP_EFTU	PF00009	37 - 161	4.6e-06	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49860 AT3G49870 AT3G49870 AT5G67560
fragaria_vesca	FvH4_1g17760
malus_domestica	MD02G1186600.v1.1 MD15G1297800.v1.1
prunus_persica	Prupe.6G220000_v2.0.a1
pyrus_communis	pycom02g15170
rosa_chinensis	RchiOBHm_Chr2g0108091 RchiOBHm_Chr2g0108181
rosa_multiflora	Rmu_sc0001484.1_g000004
rosa_roxburghii	Rroxscaffold_2G00135640
rosa_rugosa	Rorug02G0150100
rosa_samantha	Rh2AG199400 Rh2BG212100 Rh2CG204000 Rh2DG207100
rosa_wichuraiana	Rw2G015820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	258
AciI	CCGC	1 cut(s)	232
AclI	AACGTT	1 cut(s)	247
AclWI	GGATC	2 cut(s)	216, 290
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	3 cut(s)	49, 83, 540
AjnI	CCWGG	1 cut(s)	400
AluBI	AGCT	3 cut(s)	17, 64, 407
AluI	AGCT	3 cut(s)	17, 64, 407
Alw21I	GWGCWC	1 cut(s)	409
AlwI	GGATC	2 cut(s)	216, 290
AlwNI	CAGNNNCTG	1 cut(s)	299
ApeKI	GCWGC	2 cut(s)	234, 290
Asp700I	GAANNNNTTC	1 cut(s)	18
AspLEI	GCGC	1 cut(s)	260
BanII	GRGCYC	1 cut(s)	409
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	409
BbvI	GCAGC	2 cut(s)	246, 277
BciT130I	CCWGG	1 cut(s)	402
BciVI	GTATCC	2 cut(s)	122, 374
BclI	TGATCA	1 cut(s)	508
BfmI	CTRYAG	1 cut(s)	291
BfuI	GTATCC	2 cut(s)	122, 374
BisI	GCNGC	2 cut(s)	235, 291
BlsI	GCNGC	2 cut(s)	236, 292
Bme1390I	CCNGG	1 cut(s)	402
BmrFI	CCNGG	1 cut(s)	402
BmsI	GCATC	1 cut(s)	277
BpiI	GAAGAC	1 cut(s)	144
BpmI	CTGGAG	1 cut(s)	423
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	402
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseNI	ACTGG	1 cut(s)	127
BseXI	GCAGC	2 cut(s)	246, 277
Bsh1236I	CGCG	1 cut(s)	258
Bsh1285I	CGRYCG	1 cut(s)	156
BsiEI	CGRYCG	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	409
BslFI	GGGAC	1 cut(s)	453
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	453
BsmI	GAATGC	1 cut(s)	535
Bsp1286I	GDGCHC	1 cut(s)	409
Bsp143I	GATC	3 cut(s)	208, 295, 508
BspACI	CCGC	1 cut(s)	232
BspFNI	CGCG	1 cut(s)	258
BspHI	TCATGA	1 cut(s)	477
BspMAI	CTGCAG	1 cut(s)	295
BspPI	GGATC	2 cut(s)	216, 290
BsrI	ACTGG	1 cut(s)	127
BssMI	GATC	3 cut(s)	208, 295, 508
Bst2UI	CCWGG	1 cut(s)	402
Bst4CI	ACNGT	3 cut(s)	134, 154, 254
Bst6I	CTCTTC	2 cut(s)	47, 375
BstDEI	CTNAG	1 cut(s)	308
BstFNI	CGCG	1 cut(s)	258
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	3 cut(s)	211, 298, 511
BstMBI	GATC	3 cut(s)	208, 295, 508
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 532
BstNI	CCWGG	1 cut(s)	402
BstNSI	RCATGY	1 cut(s)	241
BstSCI	CCNGG	1 cut(s)	400
BstSFI	CTRYAG	1 cut(s)	291
BstUI	CGCG	1 cut(s)	258
BstV1I	GCAGC	2 cut(s)	246, 277
BstV2I	GAAGAC	1 cut(s)	144
BstX2I	RGATCY	2 cut(s)	208, 295
BstYI	RGATCY	2 cut(s)	208, 295
BsuI	GTATCC	2 cut(s)	122, 374
BtsIMutI	CAGTG	1 cut(s)	139
CaiI	CAGNNNCTG	1 cut(s)	299
CciI	TCATGA	1 cut(s)	477
CfoI	GCGC	1 cut(s)	260
CviAII	CATG	6 cut(s)	142, 166, 238, 332, 478, 486
CviJI	RGCY	7 cut(s)	17, 31, 39, 64, 407, 422, 526
CviKI_1	RGCY	7 cut(s)	17, 31, 39, 64, 407, 422, 526
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	3 cut(s)	210, 297, 510
DpnII	GATC	3 cut(s)	208, 295, 508
Eam1104I	CTCTTC	2 cut(s)	47, 375
EarI	CTCTTC	2 cut(s)	47, 375
Ecl136II	GAGCTC	1 cut(s)	407
Eco24I	GRGCYC	1 cut(s)	409
Eco32I	GATATC	1 cut(s)	483
Eco53kI	GAGCTC	1 cut(s)	407
EcoICRI	GAGCTC	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	400
EcoRV	GATATC	1 cut(s)	483
EcoT38I	GRGCYC	1 cut(s)	409
FaeI	CATG	6 cut(s)	145, 169, 241, 335, 481, 489
FaiI	YATR	8 cut(s)	143, 167, 205, 239, 279, 333, 479, 487
FaqI	GGGAC	1 cut(s)	453
FatI	CATG	6 cut(s)	141, 165, 237, 331, 477, 485
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	2 cut(s)	235, 291
FriOI	GRGCYC	1 cut(s)	409
Fsp4HI	GCNGC	2 cut(s)	235, 291
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	2 cut(s)	235, 291
GsuI	CTGGAG	1 cut(s)	423
HhaI	GCGC	1 cut(s)	260
Hin1II	CATG	6 cut(s)	145, 169, 241, 335, 481, 489
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HincII	GTYRAC	1 cut(s)	221
HindII	GTYRAC	1 cut(s)	221
HindIII	AAGCTT	1 cut(s)	15
HinfI	GANTC	2 cut(s)	145, 228
Hpy166II	GTNNAC	2 cut(s)	221, 326
Hpy188III	TCNNGA	2 cut(s)	299, 478
Hpy8I	GTNNAC	2 cut(s)	221, 326
HpyCH4III	ACNGT	3 cut(s)	134, 154, 254
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	4 cut(s)	89, 119, 293, 489
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 532
HpyF3I	CTNAG	1 cut(s)	308
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	6 cut(s)	145, 169, 241, 335, 481, 489
HspAI	GCGC	1 cut(s)	258
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	3 cut(s)	208, 295, 508
LmnI	GCTCC	2 cut(s)	61, 404
LpnPI	CCDG	5 cut(s)	75, 108, 312, 387, 414
Lsp1109I	GCAGC	2 cut(s)	246, 277
LweI	GCATC	1 cut(s)	277
MaeII	ACGT	1 cut(s)	247
MaeIII	GTNAC	3 cut(s)	175, 190, 248
MalI	GATC	3 cut(s)	210, 297, 510
MboI	GATC	3 cut(s)	208, 295, 508
MboII	GAAGA	4 cut(s)	34, 37, 149, 362
MfeI	CAATTG	1 cut(s)	25
MflI	RGATCY	2 cut(s)	208, 295
MhlI	GDGCHC	1 cut(s)	409
MluCI	AATT	1 cut(s)	25
MnlI	CCTC	3 cut(s)	50, 162, 378
MroXI	GAANNNNTTC	1 cut(s)	18
MseI	TTAA	3 cut(s)	162, 357, 425
MspR9I	CCNGG	1 cut(s)	402
MunI	CAATTG	1 cut(s)	25
Mva1269I	GAATGC	1 cut(s)	535
MvaI	CCWGG	1 cut(s)	402
MvnI	CGCG	1 cut(s)	258
MwoI	GCNNNNNNNGC	2 cut(s)	266, 532
NdeII	GATC	3 cut(s)	208, 295, 508
NlaIII	CATG	6 cut(s)	145, 169, 241, 335, 481, 489
NspI	RCATGY	1 cut(s)	241
PagI	TCATGA	1 cut(s)	477
PctI	GAATGC	1 cut(s)	535
PdmI	GAANNNNTTC	1 cut(s)	18
PfeI	GAWTC	2 cut(s)	145, 228
PkrI	GCNGC	2 cut(s)	236, 292
Psp124BI	GAGCTC	1 cut(s)	409
Psp1406I	AACGTT	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	400
PstI	CTGCAG	1 cut(s)	295
PstNI	CAGNNNCTG	1 cut(s)	299
PsuI	RGATCY	2 cut(s)	208, 295
SacI	GAGCTC	1 cut(s)	409
SaqAI	TTAA	3 cut(s)	162, 357, 425
SatI	GCNGC	2 cut(s)	235, 291
Sau3AI	GATC	3 cut(s)	208, 295, 508
ScrFI	CCNGG	1 cut(s)	402
SduI	GDGCHC	1 cut(s)	409
SetI	ASST	6 cut(s)	19, 66, 250, 309, 403, 409
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	1 cut(s)	291
Sse9I	AATT	1 cut(s)	25
SsiI	CCGC	1 cut(s)	232
SstI	GAGCTC	1 cut(s)	409
StyD4I	CCNGG	1 cut(s)	400
TaaI	ACNGT	3 cut(s)	134, 154, 254
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	2 cut(s)	317, 545
TasI	AATT	1 cut(s)	25
TfiI	GAWTC	2 cut(s)	145, 228
Tru1I	TTAA	3 cut(s)	162, 357, 425
Tru9I	TTAA	3 cut(s)	162, 357, 425
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	2 cut(s)	234, 290
TspDTI	ATGAA	1 cut(s)	466
TspRI	CASTG	1 cut(s)	139
XceI	RCATGY	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.