Rroxscaffold_2G00135640

Signal recognition particle receptor beta subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0011682
Physical Location & Seq
Reverse (-)
73216034 .. 73219441
3408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00135640.1

Sequence Viewer

Length: 381 bp
ATGGGTTTGTGGGAGGCTTTTCTCAATTGGCTCCGTAGCCTCTTTTTCAAGCAGGAAATGGAGCTATCTTTGATAGGACTTCAGAATGCCGGAAAGACTTCTCTTGTAAATGTTGTTGCAACGGGAGGATACAGTGAGGACATGATCCCTACGGTAGGATTCAATATGAAGAAGGTAACCAAAGGGAATGTTACAATAAAGTTGTGGGATCTTGGAGGTCAACCCAGGTTTCGTAGCATGTGGGAGCGATACTGTCGTGCGGTGTCTGCTATAGTCTATGTTGTTGATGCTGCTGATCCTGATAACTTGAGCACCTCAAGAGGGAACTTCATGATTTGCTTAGCAAATCCTCACTTAATGGGGACTCAAGTCAATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arf PPR

Protein Analysis

126

Amino Acids

14.14

Weight (kDa)

8.64

Isoelectric Point (pI)

19.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 8 - 115 7.1e-28 ADP-ribosylation factor family
Roc PF08477 22 - 103 3.2e-14 Ras of Complex, Roc, domain of DAPkinase
SRPRB PF09439 22 - 103 4.3e-06 Signal recognition particle receptor beta subunit
Ras PF00071 23 - 102 7.1e-11 Ras family
Gtr1_RagA PF04670 24 - 114 5.7e-09 Gtr1/RagA G protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011682)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49860 AT3G49870 AT3G49870 AT5G67560
fragaria_vesca FvH4_1g17760
malus_domestica MD02G1186600.v1.1 MD15G1297800.v1.1
prunus_persica Prupe.6G220000_v2.0.a1
pyrus_communis pycom02g15170
rosa_chinensis RchiOBHm_Chr2g0108091 RchiOBHm_Chr2g0108181
rosa_multiflora Rmu_sc0001484.1_g000004
rosa_roxburghii Rroxscaffold_2G00135640
rosa_rugosa Rorug02G0150100
rosa_samantha Rh2AG199400 Rh2BG212100 Rh2CG204000 Rh2DG207100
rosa_wichuraiana Rw2G015820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 260
AclWI GGATC 3 cut(s) 139, 216, 290
AcuI CTGAAG 1 cut(s) 65
AfiI CCNNNNNNNGG 2 cut(s) 155, 321
AgsI TTSAA 2 cut(s) 49, 163
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 1 cut(s) 64
AluI AGCT 1 cut(s) 64
Alw21I GWGCWC 1 cut(s) 314
AlwI GGATC 3 cut(s) 139, 216, 290
ApeKI GCWGC 1 cut(s) 290
Asp700I GAANNNNTTC 1 cut(s) 97
BaeI ACNNNNGTAYC 2 cut(s) 241, 274
Bbv12I GWGCWC 1 cut(s) 314
BbvI GCAGC 1 cut(s) 277
BciT130I CCWGG 1 cut(s) 226
BciVI GTATCC 1 cut(s) 122
BfmI CTRYAG 1 cut(s) 270
BfuI GTATCC 1 cut(s) 122
BisI GCNGC 1 cut(s) 291
BlpI GCTNAGC 1 cut(s) 340
BlsI GCNGC 1 cut(s) 292
Bme1390I CCNGG 1 cut(s) 226
BmiI GGNNCC 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 226
BmsI GCATC 1 cut(s) 277
BoxI GACNNNNGTC 1 cut(s) 368
Bpu1102I GCTNAGC 1 cut(s) 340
BpuEI CTTGAG 3 cut(s) 301, 328, 351
BsaJI CCNNGG 1 cut(s) 224
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 321
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 224
BseLI CCNNNNNNNGG 2 cut(s) 155, 321
BseXI GCAGC 1 cut(s) 277
BsiHKAI GWGCWC 1 cut(s) 314
BsiSI CCGG 1 cut(s) 90
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 2 cut(s) 155, 321
BsmFI GGGAC 1 cut(s) 376
BsmI GAATGC 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 314
Bsp143I GATC 3 cut(s) 144, 208, 295
Bsp1720I GCTNAGC 1 cut(s) 340
BspACI CCGC 1 cut(s) 260
BspHI TCATGA 1 cut(s) 330
BspLI GGNNCC 1 cut(s) 32
BspPI GGATC 3 cut(s) 139, 216, 290
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 3 cut(s) 144, 208, 295
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 3 cut(s) 134, 154, 254
BstDEI CTNAG 1 cut(s) 340
BstEII GGTNACC 1 cut(s) 175
BstENI CCTNNNNNAGG 1 cut(s) 153
BstKTI GATC 3 cut(s) 147, 211, 298
BstMBI GATC 3 cut(s) 144, 208, 295
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNI CCWGG 1 cut(s) 226
BstNSI RCATGY 1 cut(s) 241
BstPAI GACNNNNGTC 1 cut(s) 368
BstPI GGTNACC 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 224
BstSFI CTRYAG 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 277
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BsuI GTATCC 1 cut(s) 122
BtsIMutI CAGTG 1 cut(s) 139
CciI TCATGA 1 cut(s) 330
CviAII CATG 3 cut(s) 142, 238, 331
CviJI RGCY 4 cut(s) 17, 31, 39, 64
CviKI_1 RGCY 4 cut(s) 17, 31, 39, 64
DdeI CTNAG 1 cut(s) 340
DpnI GATC 3 cut(s) 146, 210, 297
DpnII GATC 3 cut(s) 144, 208, 295
Eco57I CTGAAG 1 cut(s) 65
Eco91I GGTNACC 1 cut(s) 175
EcoNI CCTNNNNNAGG 1 cut(s) 153
EcoO65I GGTNACC 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 224
FaeI CATG 3 cut(s) 145, 241, 334
FaiI YATR 6 cut(s) 143, 167, 239, 272, 279, 332
FaqI GGGAC 1 cut(s) 376
FatI CATG 3 cut(s) 141, 237, 330
Fnu4HI GCNGC 1 cut(s) 291
Fsp4HI GCNGC 1 cut(s) 291
GluI GCNGC 1 cut(s) 291
HapII CCGG 1 cut(s) 90
Hin1II CATG 3 cut(s) 145, 241, 334
HincII GTYRAC 1 cut(s) 221
HindII GTYRAC 1 cut(s) 221
HinfI GANTC 2 cut(s) 159, 364
HpaII CCGG 1 cut(s) 90
Hpy166II GTNNAC 1 cut(s) 221
Hpy188I TCNGA 1 cut(s) 84
Hpy188III TCNNGA 3 cut(s) 299, 318, 331
Hpy8I GTNNAC 1 cut(s) 221
HpyAV CCTTC 1 cut(s) 166
HpyCH4III ACNGT 3 cut(s) 134, 154, 254
HpyCH4V TGCA 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 1 cut(s) 340
Hsp92II CATG 3 cut(s) 145, 241, 334
Kzo9I GATC 3 cut(s) 144, 208, 295
LmnI GCTCC 3 cut(s) 36, 61, 244
LpnPI CCDG 5 cut(s) 38, 103, 211, 238, 312
Lsp1109I GCAGC 1 cut(s) 277
LweI GCATC 1 cut(s) 277
MaeIII GTNAC 2 cut(s) 175, 190
MalI GATC 3 cut(s) 146, 210, 297
MboI GATC 3 cut(s) 144, 208, 295
MboII GAAGA 1 cut(s) 181
MfeI CAATTG 1 cut(s) 25
MflI RGATCY 1 cut(s) 208
MhlI GDGCHC 1 cut(s) 314
MluCI AATT 2 cut(s) 25, 373
MlyI GAGTC 1 cut(s) 358
MnlI CCTC 8 cut(s) 7, 50, 119, 130, 209, 314, 325, 360
MroXI GAANNNNTTC 1 cut(s) 97
MseI TTAA 1 cut(s) 356
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 226
MunI CAATTG 1 cut(s) 25
Mva1269I GAATGC 1 cut(s) 91
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 266
NdeII GATC 3 cut(s) 144, 208, 295
NlaIII CATG 3 cut(s) 145, 241, 334
NlaIV GGNNCC 1 cut(s) 32
NspI RCATGY 1 cut(s) 241
PagI TCATGA 1 cut(s) 330
PctI GAATGC 1 cut(s) 91
PdmI GAANNNNTTC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 159
PkrI GCNGC 1 cut(s) 292
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
PshAI GACNNNNGTC 1 cut(s) 368
Psp6I CCWGG 1 cut(s) 224
PspEI GGTNACC 1 cut(s) 175
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 32
PsuI RGATCY 1 cut(s) 208
SaqAI TTAA 1 cut(s) 356
SatI GCNGC 1 cut(s) 291
Sau3AI GATC 3 cut(s) 144, 208, 295
SchI GAGTC 1 cut(s) 358
ScrFI CCNGG 1 cut(s) 226
SduI GDGCHC 1 cut(s) 314
SetI ASST 5 cut(s) 66, 177, 220, 230, 317
SfaNI GCATC 1 cut(s) 277
SfcI CTRYAG 1 cut(s) 270
SmlI CTYRAG 3 cut(s) 307, 316, 366
SmoI CTYRAG 3 cut(s) 307, 316, 366
Sse9I AATT 2 cut(s) 25, 373
SsiI CCGC 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 224
TaaI ACNGT 3 cut(s) 134, 154, 254
TasI AATT 2 cut(s) 25, 373
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TscAI CASTG 1 cut(s) 139
TseI GCWGC 1 cut(s) 290
TspDTI ATGAA 2 cut(s) 182, 319
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 1 cut(s) 139
XagI CCTNNNNNAGG 1 cut(s) 153
XceI RCATGY 1 cut(s) 241
XmnI GAANNNNTTC 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.