Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011682

Physical Location & Seq

Genomic Coordinates Forward (+)

19667608 .. 19669469

Gene Structure 1862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48212

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGACGGTGCTAAGAAATGTTGGAAACAGGCATTGTCTGTTGTGGAATGGGTTTATAAGGACGGGGGCAATAAACACTGCAAAAGCAGCTATGTTGTTGATGCTGCTGATCCTGATAACTTGAGCACCTCAAGAGGGGAACTTCATGATTTGCTTAGCAAATCCTCACTTAATGGTATCCCATTGCTGATCCTGGGTAACAAGATTGATAGACCGGGAGCTCTGAGTAAACAAGCTTTGACTGATGAAATGCAAGACACATCATGGGGACTCAAGTCAAATACTGATAGAGAATTATGTTGCTCCATGATCTCATGCAAGAACTCAACCAACATAGACTCAGTTATTGATTGGCTTCTAAAGCATTCCAAATCAAAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0002252 GO:0002376 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009615 GO:0012505 GO:0016020 GO:0017076 GO:0019001 GO:0030054 GO:0031090 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:0098542 GO:0098588 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

127

Amino Acids

13.94

Weight (kDa)

7.62

Isoelectric Point (pI)

18.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	31 - 121	2.9e-14	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49860 AT3G49870 AT3G49870 AT5G67560
fragaria_vesca	FvH4_1g17760
malus_domestica	MD02G1186600.v1.1 MD15G1297800.v1.1
prunus_persica	Prupe.6G220000_v2.0.a1
pyrus_communis	pycom02g15170
rosa_chinensis	RchiOBHm_Chr2g0108091 RchiOBHm_Chr2g0108181
rosa_multiflora	Rmu_sc0001484.1_g000004
rosa_roxburghii	Rroxscaffold_2G00135640
rosa_rugosa	Rorug02G0150100
rosa_samantha	Rh2AG199400 Rh2BG212100 Rh2CG204000 Rh2DG207100
rosa_wichuraiana	Rw2G015820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	57
AclWI	GGATC	2 cut(s)	104, 184
AfiI	CCNNNNNNNGG	1 cut(s)	135
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	3 cut(s)	90, 221, 236
AluI	AGCT	3 cut(s)	90, 221, 236
Alw21I	GWGCWC	2 cut(s)	128, 223
AlwI	GGATC	2 cut(s)	104, 184
ApeKI	GCWGC	2 cut(s)	87, 104
AsuC2I	CCSGG	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	223
Bbv12I	GWGCWC	2 cut(s)	128, 223
BbvI	GCAGC	2 cut(s)	91, 99
BciT130I	CCWGG	1 cut(s)	194
BciVI	GTATCC	1 cut(s)	188
BcnI	CCSGG	1 cut(s)	216
BfuI	GTATCC	1 cut(s)	188
BisI	GCNGC	2 cut(s)	88, 105
BlpI	GCTNAGC	1 cut(s)	155
BlsI	GCNGC	2 cut(s)	89, 106
Bme1390I	CCNGG	2 cut(s)	194, 216
BmrFI	CCNGG	2 cut(s)	194, 216
BmsI	GCATC	1 cut(s)	91
BoxI	GACNNNNGTC	1 cut(s)	274
Bpu1102I	GCTNAGC	1 cut(s)	155
BpuEI	CTTGAG	3 cut(s)	115, 142, 257
BpuMI	CCSGG	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse3DI	GCAATG	1 cut(s)	182
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	193
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMI	GCAATG	1 cut(s)	182
BseMII	CTCAG	2 cut(s)	215, 354
BseXI	GCAGC	2 cut(s)	91, 99
BsiHKAI	GWGCWC	2 cut(s)	128, 223
BsiSI	CCGG	1 cut(s)	215
BslFI	GGGAC	1 cut(s)	282
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	282
BsmI	GAATGC	1 cut(s)	364
Bsp1286I	GDGCHC	2 cut(s)	128, 223
Bsp143I	GATC	3 cut(s)	109, 189, 309
Bsp1720I	GCTNAGC	1 cut(s)	155
BspCNI	CTCAG	2 cut(s)	216, 353
BspHI	TCATGA	1 cut(s)	145
BspPI	GGATC	2 cut(s)	104, 184
BsrDI	GCAATG	1 cut(s)	182
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	3 cut(s)	109, 189, 309
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	8
BstDEI	CTNAG	4 cut(s)	12, 155, 224, 340
BstKTI	GATC	3 cut(s)	112, 192, 312
BstMBI	GATC	3 cut(s)	109, 189, 309
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 361
BstNI	CCWGG	1 cut(s)	194
BstPAI	GACNNNNGTC	1 cut(s)	274
BstSCI	CCNGG	2 cut(s)	192, 214
BstV1I	GCAGC	2 cut(s)	91, 99
BsuI	GTATCC	1 cut(s)	188
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	76
CciI	TCATGA	1 cut(s)	145
CviAII	CATG	4 cut(s)	146, 264, 307, 315
CviJI	RGCY	5 cut(s)	90, 221, 236, 355, 381
CviKI_1	RGCY	5 cut(s)	90, 221, 236, 355, 381
DdeI	CTNAG	4 cut(s)	12, 155, 224, 340
DpnI	GATC	3 cut(s)	111, 191, 311
DpnII	GATC	3 cut(s)	109, 189, 309
Ecl136II	GAGCTC	1 cut(s)	221
Eco24I	GRGCYC	1 cut(s)	223
Eco53kI	GAGCTC	1 cut(s)	221
EcoICRI	GAGCTC	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	223
FaeI	CATG	4 cut(s)	149, 267, 310, 318
FaiI	YATR	8 cut(s)	57, 93, 147, 265, 298, 308, 316, 335
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	4 cut(s)	145, 263, 306, 314
Fnu4HI	GCNGC	2 cut(s)	88, 105
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	2 cut(s)	88, 105
GluI	GCNGC	2 cut(s)	88, 105
HapII	CCGG	1 cut(s)	215
Hin1II	CATG	4 cut(s)	149, 267, 310, 318
HindIII	AAGCTT	1 cut(s)	234
HinfI	GANTC	2 cut(s)	270, 338
HpaII	CCGG	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	3 cut(s)	113, 132, 146
Hpy8I	GTNNAC	1 cut(s)	230
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4V	TGCA	3 cut(s)	81, 253, 318
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 361
HpyF3I	CTNAG	4 cut(s)	12, 155, 224, 340
Hsp92II	CATG	4 cut(s)	149, 267, 310, 318
Kzo9I	GATC	3 cut(s)	109, 189, 309
LmnI	GCTCC	2 cut(s)	218, 308
LpnPI	CCDG	5 cut(s)	14, 126, 179, 206, 228
Lsp1109I	GCAGC	2 cut(s)	91, 99
LweI	GCATC	1 cut(s)	91
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	3 cut(s)	111, 191, 311
MboI	GATC	3 cut(s)	109, 189, 309
MhlI	GDGCHC	2 cut(s)	128, 223
MluCI	AATT	1 cut(s)	293
MlyI	GAGTC	2 cut(s)	264, 332
MnlI	CCTC	3 cut(s)	128, 139, 175
MseI	TTAA	1 cut(s)	171
MspI	CCGG	1 cut(s)	215
MspR9I	CCNGG	2 cut(s)	194, 216
Mva1269I	GAATGC	1 cut(s)	364
MvaI	CCWGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	2 cut(s)	87, 361
NciI	CCSGG	1 cut(s)	216
NdeII	GATC	3 cut(s)	109, 189, 309
NlaIII	CATG	4 cut(s)	149, 267, 310, 318
PagI	TCATGA	1 cut(s)	145
PctI	GAATGC	1 cut(s)	364
PkrI	GCNGC	2 cut(s)	89, 106
PleI	GAGTC	2 cut(s)	264, 332
PpsI	GAGTC	2 cut(s)	264, 332
PshAI	GACNNNNGTC	1 cut(s)	274
PsiI	TTATAA	1 cut(s)	57
Psp124BI	GAGCTC	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
SacI	GAGCTC	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	2 cut(s)	88, 105
Sau3AI	GATC	3 cut(s)	109, 189, 309
SchI	GAGTC	2 cut(s)	264, 332
ScrFI	CCNGG	2 cut(s)	194, 216
SduI	GDGCHC	2 cut(s)	128, 223
SetI	ASST	4 cut(s)	92, 131, 223, 238
SfaNI	GCATC	1 cut(s)	91
SmlI	CTYRAG	3 cut(s)	121, 130, 272
SmoI	CTYRAG	3 cut(s)	121, 130, 272
Sse9I	AATT	1 cut(s)	293
SstI	GAGCTC	1 cut(s)	223
StyD4I	CCNGG	2 cut(s)	192, 214
TaaI	ACNGT	1 cut(s)	8
TasI	AATT	1 cut(s)	293
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	1 cut(s)	83
TseI	GCWGC	2 cut(s)	87, 104
TspDTI	ATGAA	2 cut(s)	134, 261
TspRI	CASTG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.