AT3G49880

Belongs to the glycosyl hydrolase 43 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004682
Physical Location & Seq
Forward (+)
18496182 .. 18498901
2720 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G49880.1

Sequence Viewer

Length: 1401 bp
ATGAGGGTGATGAAGAACAAACACAACAAGAAAGCAACGTTTTTGCGTTGTTCACCGTTTGGTTTAGTATCTACAGTTGTGGGATGTGTTTTCATGATTCATTTAACCATGTTATATAGCAGAAGTTATAGTGTAGATCTTGATCTTTCACCTCAGTTACTTATCCATCATCCGATTGTCCGTGAGCTCGAACGCGTTGAAGAAGAGAATATCCATATGCCGCCTCCTAGGAAGCGTTCTCCTCGCGCTATCAAACGGAAACCAAAAACACCAACCACTTTAGTCGAAGAGTTTCTCGACGAGAATTCACAGATTCGACATCTTTTTTTCCCTGATATGAAATCAGCTTTTGGTCCTACCAAGGAAGATACTAATGACACATCGCATTACTACTTCCCGGGGAGAATTTGGACAGACACGGAAGGGAATCCGATTCAAGCACACGGTGGTGGCATTTTGTTTGATGACATATCAAAGGTTTACTATTGGTATGGTGAATATAAAGATGGACCAACTTATCTTTCTCACAAGAAAGGTGCTGCTAGAGTTGATATAATCGGTGTTGGATGTTACTCGTCGAAAGATTTATGGACATGGAAAAACGAAGGTGTTGTATTAGCAGCCGAAGAAACAGATGAGACACATGACTTACACAAATCCAATGTTCTTGAGCGTCCTAAAGTGATATACAATTCAGATACAGGTAAGTACGTGATGTGGATGCATATCGACGATGCAAACTACACTAAAGCTTCGGTTGGTGTAGCCATTAGCGATAACCCAACAGGTCCATTCGATTACTTATACAGCAGATCGCCACACGGGTTTGATAGTAGAGACATGACAGTCTACAAAGACGATGATAACGTAGCCTACTTGATATATTCATCAGAGGACAACAGCGTGCTGCATATCGGTCCCCTGACCGAGAATTACCTCGATGTGAAGCCGGTAATGAAGAGAATCATGGTGGGACAACACAGAGAAGCTCCGGCTATCTTCAAACATCAAAACACTTACTACATGATCACGTCTGGTTGCACCGGATGGGCACCAAACGAAGCATTAGCTCATGCCGCTGAGTCGATAATGGGTCCGTGGGAGACATTAGGGAATCCATGTGTTGGCGGGAACAGTATTTTCCGTTCGACGACGTTTTTCGCGCAGAGCACGTTCGTGATTCCGTTACCAGGTGTTCCTGGTGTGTTTATATTTATGGCCGATAGGTGGAATCCGGCGGATTTGCGAGATTCGAGATATTTGTGGTTACCGTTGATAGTTGGTGGACCGGCTGATCGTCCTCTTGAGTATAGTTTCGGGTTTCCGATGTGGTCGAGAGTTTCTGTATATTGGCATAGACAATGGCGGTTGCCTTCAGCAAGAGAGAAGAAGATTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_43

Protein Analysis

466

Amino Acids

53.25

Weight (kDa)

6.81

Isoelectric Point (pI)

45.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_43 PF04616 186 - 369 1.7e-15 Glycosyl hydrolases family 43
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 845
AccB1I GGYRCC 1 cut(s) 1051
AccB7I CCANNNNNTGG 1 cut(s) 1124
AccI GTMKAC 1 cut(s) 849
AccII CGCG 3 cut(s) 195, 246, 1163
AciI CCGC 5 cut(s) 221, 1077, 1128, 1238, 1366
AclI AACGTT 1 cut(s) 38
AcoI YGGCCR 1 cut(s) 1218
AcsI RAATTY 2 cut(s) 304, 405
AcuI CTGAAG 1 cut(s) 1359
AdeI CACNNNGTG 1 cut(s) 446
AfaI GTAC 1 cut(s) 710
AfiI CCNNNNNNNGG 3 cut(s) 1124, 1190, 1227
AflIII ACRYGT 1 cut(s) 193
AgsI TTSAA 3 cut(s) 200, 437, 1003
AjiI CACGTC 1 cut(s) 1032
AjnI CCWGG 2 cut(s) 1189, 1198
AjuI GAANNNNNNNTTGG 2 cut(s) 505, 537
AleI CACNNNNGTG 2 cut(s) 447, 1175
AluBI AGCT 5 cut(s) 187, 347, 752, 989, 1070
AluI AGCT 5 cut(s) 187, 347, 752, 989, 1070
Alw21I GWGCWC 2 cut(s) 189, 1172
Alw26I GTCTC 3 cut(s) 632, 831, 1097
Ama87I CYCGRG 1 cut(s) 397
AoxI GGCC 1 cut(s) 1218
ApeKI GCWGC 3 cut(s) 539, 620, 907
ApoI RAATTY 2 cut(s) 304, 405
Asp700I GAANNNNTTC 1 cut(s) 291
AspA2I CCTAGG 1 cut(s) 227
AspLEI GCGC 2 cut(s) 248, 1165
AspS9I GGNCC 6 cut(s) 353, 509, 788, 917, 1094, 1286
AsuC2I CCSGG 2 cut(s) 398, 399
AsuHPI GGTGA 4 cut(s) 19, 45, 141, 506
AvaI CYCGRG 1 cut(s) 397
AvaII GGWCC 6 cut(s) 353, 509, 788, 917, 1094, 1286
AvrII CCTAGG 1 cut(s) 227
BaeGI GKGCMC 1 cut(s) 1054
BanI GGYRCC 1 cut(s) 1051
BanII GRGCYC 1 cut(s) 189
Bbv12I GWGCWC 2 cut(s) 189, 1172
BbvI GCAGC 3 cut(s) 526, 632, 894
BccI CCATC 3 cut(s) 174, 500, 1041
BciT130I CCWGG 2 cut(s) 1191, 1200
BclI TGATCA 1 cut(s) 1026
BcnI CCSGG 2 cut(s) 398, 399
BcoDI GTCTC 3 cut(s) 632, 831, 1097
BfaI CTAG 2 cut(s) 228, 543
BfmI CTRYAG 1 cut(s) 72
BglII AGATCT 1 cut(s) 136
BisI GCNGC 5 cut(s) 221, 540, 621, 908, 1077
BlnI CCTAGG 1 cut(s) 227
BlsI GCNGC 5 cut(s) 222, 541, 622, 909, 1078
Bme1390I CCNGG 4 cut(s) 398, 399, 1191, 1200
Bme18I GGWCC 6 cut(s) 353, 509, 788, 917, 1094, 1286
BmeT110I CYCGRG 1 cut(s) 397
BmgBI CACGTC 1 cut(s) 1032
BmgT120I GGNCC 6 cut(s) 353, 509, 788, 917, 1094, 1286
BmiI GGNNCC 3 cut(s) 919, 1053, 1095
BmrFI CCNGG 4 cut(s) 398, 399, 1191, 1200
BmsI GCATC 2 cut(s) 711, 724
BpuEI CTTGAG 2 cut(s) 689, 1325
BpuMI CCSGG 2 cut(s) 398, 399
BsaAI YACGTR 1 cut(s) 712
BsaBI GATNNNNATC 2 cut(s) 141, 725
BsaJI CCNNGG 5 cut(s) 227, 360, 397, 398, 1097
BsaWI WCCGGW 1 cut(s) 1043
Bsc4I CCNNNNNNNGG 3 cut(s) 1124, 1190, 1227
Bse118I RCCGGY 2 cut(s) 949, 1288
Bse8I GATNNNNATC 2 cut(s) 141, 725
BseBI CCWGG 2 cut(s) 1191, 1200
BseDI CCNNGG 5 cut(s) 227, 360, 397, 398, 1097
BseGI GGATG 5 cut(s) 89, 169, 572, 726, 1052
BseJI GATNNNNATC 2 cut(s) 141, 725
BseLI CCNNNNNNNGG 3 cut(s) 1124, 1190, 1227
BseMII CTCAG 2 cut(s) 167, 1071
BseRI GAGGAG 1 cut(s) 231
BseSI GKGCMC 1 cut(s) 1054
BseXI GCAGC 3 cut(s) 526, 632, 894
Bsh1236I CGCG 3 cut(s) 195, 246, 1163
BshFI GGCC 1 cut(s) 1220
BshNI GGYRCC 1 cut(s) 1051
BsiHKAI GWGCWC 2 cut(s) 189, 1172
BsiHKCI CYCGRG 1 cut(s) 397
BsiSI CCGG 6 cut(s) 398, 950, 992, 1044, 1235, 1289
BslFI GGGAC 2 cut(s) 903, 987
BslI CCNNNNNNNGG 3 cut(s) 1124, 1190, 1227
BsmAI GTCTC 3 cut(s) 632, 831, 1097
BsmFI GGGAC 2 cut(s) 903, 987
BsnI GGCC 1 cut(s) 1220
BsoBI CYCGRG 1 cut(s) 397
Bsp1286I GDGCHC 3 cut(s) 189, 1054, 1172
Bsp143I GATC 5 cut(s) 136, 142, 812, 1026, 1294
BspACI CCGC 5 cut(s) 221, 1077, 1128, 1238, 1366
BspANI GGCC 1 cut(s) 1220
BspCNI CTCAG 2 cut(s) 166, 1072
BspFNI CGCG 3 cut(s) 195, 246, 1163
BspHI TCATGA 1 cut(s) 93
BspLI GGNNCC 3 cut(s) 919, 1053, 1095
BspT107I GGYRCC 1 cut(s) 1051
BsrFI RCCGGY 2 cut(s) 949, 1288
BssAI RCCGGY 2 cut(s) 949, 1288
BssECI CCNNGG 5 cut(s) 227, 360, 397, 398, 1097
BssMI GATC 5 cut(s) 136, 142, 812, 1026, 1294
BssT1I CCWWGG 2 cut(s) 227, 360
Bst2UI CCWGG 2 cut(s) 1191, 1200
Bst4CI ACNGT 6 cut(s) 57, 76, 446, 847, 1136, 1272
Bst6I CTCTTC 3 cut(s) 198, 282, 953
BstBAI YACGTR 1 cut(s) 712
BstC8I GCNNGC 1 cut(s) 905
BstDEI CTNAG 3 cut(s) 153, 1080, 1398
BstDSI CCRYGG 1 cut(s) 1097
BstEII GGTNACC 1 cut(s) 1266
BstF5I GGATG 5 cut(s) 89, 169, 572, 726, 1052
BstFNI CGCG 3 cut(s) 195, 246, 1163
BstHHI GCGC 2 cut(s) 248, 1165
BstKTI GATC 5 cut(s) 139, 145, 815, 1029, 1297
BstMAI GTCTC 3 cut(s) 632, 831, 1097
BstMBI GATC 5 cut(s) 136, 142, 812, 1026, 1294
BstMWI GCNNNNNNNGC 1 cut(s) 1076
BstNI CCWGG 2 cut(s) 1191, 1200
BstPI GGTNACC 1 cut(s) 1266
BstSCI CCNGG 4 cut(s) 396, 397, 1189, 1198
BstSFI CTRYAG 1 cut(s) 72
BstSLI GKGCMC 1 cut(s) 1054
BstUI CGCG 3 cut(s) 195, 246, 1163
BstV1I GCAGC 3 cut(s) 526, 632, 894
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
BsuRI GGCC 1 cut(s) 1220
BtgI CCRYGG 1 cut(s) 1097
BtgZI GCGATG 1 cut(s) 366
BtrI CACGTC 1 cut(s) 1032
BtsCI GGATG 5 cut(s) 89, 169, 572, 726, 1052
Cac8I GCNNGC 1 cut(s) 905
CciI TCATGA 1 cut(s) 93
CfoI GCGC 2 cut(s) 248, 1165
Cfr10I RCCGGY 2 cut(s) 949, 1288
Cfr13I GGNCC 6 cut(s) 353, 509, 788, 917, 1094, 1286
Cfr9I CCCGGG 1 cut(s) 397
CseI GACGC 1 cut(s) 662
CsiI ACCWGGT 1 cut(s) 1189
Csp6I GTAC 1 cut(s) 709
CviAII CATG 9 cut(s) 94, 109, 594, 644, 841, 967, 1024, 1073, 1119
CviQI GTAC 1 cut(s) 709
DdeI CTNAG 3 cut(s) 153, 1080, 1398
DpnI GATC 5 cut(s) 138, 144, 814, 1028, 1296
DpnII GATC 5 cut(s) 136, 142, 812, 1026, 1294
DraIII CACNNNGTG 1 cut(s) 446
DrdI GACNNNNNNGTC 1 cut(s) 845
DseDI GACNNNNNNGTC 1 cut(s) 845
EaeI YGGCCR 1 cut(s) 1218
Eam1104I CTCTTC 3 cut(s) 198, 282, 953
EarI CTCTTC 3 cut(s) 198, 282, 953
EciI GGCGGA 1 cut(s) 1253
Ecl136II GAGCTC 1 cut(s) 187
Eco130I CCWWGG 2 cut(s) 227, 360
Eco24I GRGCYC 1 cut(s) 189
Eco47I GGWCC 6 cut(s) 353, 509, 788, 917, 1094, 1286
Eco53kI GAGCTC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 1359
Eco88I CYCGRG 1 cut(s) 397
Eco91I GGTNACC 1 cut(s) 1266
EcoICRI GAGCTC 1 cut(s) 187
EcoO65I GGTNACC 1 cut(s) 1266
EcoRI GAATTC 1 cut(s) 304
EcoRII CCWGG 2 cut(s) 1189, 1198
EcoT14I CCWWGG 2 cut(s) 227, 360
EcoT22I ATGCAT 1 cut(s) 726
EcoT38I GRGCYC 1 cut(s) 189
ErhI CCWWGG 2 cut(s) 227, 360
FaeI CATG 9 cut(s) 97, 112, 597, 647, 844, 970, 1027, 1076, 1122
FaqI GGGAC 2 cut(s) 903, 987
FatI CATG 9 cut(s) 93, 108, 593, 643, 840, 966, 1023, 1072, 1118
FauI CCCGC 1 cut(s) 1121
FauNDI CATATG 1 cut(s) 216
FbaI TGATCA 1 cut(s) 1026
FblI GTMKAC 1 cut(s) 849
Fnu4HI GCNGC 5 cut(s) 221, 540, 621, 908, 1077
FokI GGATG 5 cut(s) 96, 156, 579, 733, 1059
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 5 cut(s) 221, 540, 621, 908, 1077
FspBI CTAG 2 cut(s) 228, 543
GlaI GCGC 2 cut(s) 247, 1164
GluI GCNGC 5 cut(s) 221, 540, 621, 908, 1077
HaeIII GGCC 1 cut(s) 1220
HapII CCGG 6 cut(s) 398, 950, 992, 1044, 1235, 1289
HgaI GACGC 1 cut(s) 662
HhaI GCGC 2 cut(s) 248, 1165
Hin1II CATG 9 cut(s) 97, 112, 597, 647, 844, 970, 1027, 1076, 1122
Hin6I GCGC 2 cut(s) 246, 1163
HinP1I GCGC 2 cut(s) 246, 1163
HindIII AAGCTT 1 cut(s) 750
HpaII CCGG 6 cut(s) 398, 950, 992, 1044, 1235, 1289
HphI GGTGA 4 cut(s) 19, 45, 141, 506
Hpy166II GTNNAC 4 cut(s) 53, 481, 850, 1286
Hpy188I TCNGA 5 cut(s) 174, 432, 697, 892, 1326
Hpy188III TCNNGA 8 cut(s) 94, 140, 296, 668, 1177, 1254, 1304, 1335
Hpy8I GTNNAC 4 cut(s) 53, 481, 850, 1286
Hpy99I CGWCG 5 cut(s) 302, 580, 734, 1153, 1156
HpyAV CCTTC 3 cut(s) 416, 599, 1383
HpyCH4III ACNGT 6 cut(s) 57, 76, 446, 847, 1136, 1272
HpyCH4IV ACGT 6 cut(s) 38, 711, 867, 1031, 1154, 1172
HpyCH4V TGCA 4 cut(s) 724, 737, 910, 1041
HpyF10VI GCNNNNNNNGC 1 cut(s) 1076
HpyF3I CTNAG 3 cut(s) 153, 1080, 1398
HpySE526I ACGT 6 cut(s) 38, 711, 867, 1031, 1154, 1172
Hsp92II CATG 9 cut(s) 97, 112, 597, 647, 844, 970, 1027, 1076, 1122
HspAI GCGC 2 cut(s) 246, 1163
Ksp22I TGATCA 1 cut(s) 1026
Kzo9I GATC 5 cut(s) 136, 142, 812, 1026, 1294
LmnI GCTCC 1 cut(s) 994
Lsp1109I GCAGC 3 cut(s) 526, 632, 894
LweI GCATC 2 cut(s) 711, 724
MabI ACCWGGT 1 cut(s) 1189
MaeI CTAG 2 cut(s) 228, 543
MaeII ACGT 6 cut(s) 38, 711, 867, 1031, 1154, 1172
MaeIII GTNAC 4 cut(s) 156, 569, 1185, 1266
MalI GATC 5 cut(s) 138, 144, 814, 1028, 1296
MboI GATC 5 cut(s) 136, 142, 812, 1026, 1294
MboII GAAGA 9 cut(s) 25, 212, 215, 299, 377, 638, 970, 991, 1399
MflI RGATCY 1 cut(s) 136
MhlI GDGCHC 3 cut(s) 189, 1054, 1172
MluCI AATT 4 cut(s) 304, 405, 691, 931
MluI ACGCGT 1 cut(s) 193
MlyI GAGTC 1 cut(s) 1091
MmeI TCCRAC 1 cut(s) 544
MnlI CCTC 6 cut(s) 162, 234, 252, 886, 947, 1311
Mph1103I ATGCAT 1 cut(s) 726
MroXI GAANNNNTTC 1 cut(s) 291
MseI TTAA 1 cut(s) 104
MslI CAYNNNNRTG 2 cut(s) 447, 1175
MspA1I CMGCKG 1 cut(s) 1079
MspI CCGG 6 cut(s) 398, 950, 992, 1044, 1235, 1289
MspR9I CCNGG 4 cut(s) 398, 399, 1191, 1200
MvaI CCWGG 2 cut(s) 1191, 1200
MvnI CGCG 3 cut(s) 195, 246, 1163
MwoI GCNNNNNNNGC 1 cut(s) 1076
NciI CCSGG 2 cut(s) 398, 399
NdeI CATATG 1 cut(s) 216
NdeII GATC 5 cut(s) 136, 142, 812, 1026, 1294
NlaIII CATG 9 cut(s) 97, 112, 597, 647, 844, 970, 1027, 1076, 1122
NlaIV GGNNCC 3 cut(s) 919, 1053, 1095
NsiI ATGCAT 1 cut(s) 726
OliI CACNNNNGTG 2 cut(s) 447, 1175
PagI TCATGA 1 cut(s) 93
PcsI WCGNNNNNNNCGW 1 cut(s) 864
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 9 cut(s) 97, 313, 427, 433, 963, 1114, 1180, 1231, 1250
PflMI CCANNNNNTGG 1 cut(s) 1124
PkrI GCNGC 5 cut(s) 222, 541, 622, 909, 1078
PleI GAGTC 1 cut(s) 1090
PpsI GAGTC 1 cut(s) 1090
Ppu21I YACGTR 1 cut(s) 712
Psp124BI GAGCTC 1 cut(s) 189
Psp1406I AACGTT 1 cut(s) 38
Psp6I CCWGG 2 cut(s) 1189, 1198
PspEI GGTNACC 1 cut(s) 1266
PspGI CCWGG 2 cut(s) 1189, 1198
PspN4I GGNNCC 3 cut(s) 919, 1053, 1095
PspPI GGNCC 6 cut(s) 353, 509, 788, 917, 1094, 1286
PsrI GAACNNNNNNTAC 2 cut(s) 1129, 1161
PsuI RGATCY 1 cut(s) 136
RsaI GTAC 1 cut(s) 710
RsaNI GTAC 1 cut(s) 709
RseI CAYNNNNRTG 2 cut(s) 447, 1175
SacI GAGCTC 1 cut(s) 189
SaqAI TTAA 1 cut(s) 104
SatI GCNGC 5 cut(s) 221, 540, 621, 908, 1077
Sau3AI GATC 5 cut(s) 136, 142, 812, 1026, 1294
Sau96I GGNCC 6 cut(s) 353, 509, 788, 917, 1094, 1286
SchI GAGTC 1 cut(s) 1091
ScrFI CCNGG 4 cut(s) 398, 399, 1191, 1200
SduI GDGCHC 3 cut(s) 189, 1054, 1172
SexAI ACCWGGT 1 cut(s) 1189
SfaNI GCATC 2 cut(s) 711, 724
SfcI CTRYAG 1 cut(s) 72
SinI GGWCC 6 cut(s) 353, 509, 788, 917, 1094, 1286
SmaI CCCGGG 1 cut(s) 399
SmiMI CAYNNNNRTG 2 cut(s) 447, 1175
SmlI CTYRAG 2 cut(s) 668, 1304
SmoI CTYRAG 2 cut(s) 668, 1304
Sse9I AATT 4 cut(s) 304, 405, 691, 931
SsiI CCGC 5 cut(s) 221, 1077, 1128, 1238, 1366
SspMI CTAG 2 cut(s) 228, 543
SstI GAGCTC 1 cut(s) 189
StyD4I CCNGG 4 cut(s) 396, 397, 1189, 1198
StyI CCWWGG 2 cut(s) 227, 360
TaaI ACNGT 6 cut(s) 57, 76, 446, 847, 1136, 1272
TaiI ACGT 6 cut(s) 41, 714, 870, 1034, 1157, 1175
TaqII GACCGA 2 cut(s) 905, 941
TasI AATT 4 cut(s) 304, 405, 691, 931
TauI GCSGC 2 cut(s) 223, 1079
TfiI GAWTC 9 cut(s) 97, 313, 427, 433, 963, 1114, 1180, 1231, 1250
Tru1I TTAA 1 cut(s) 104
Tru9I TTAA 1 cut(s) 104
TseI GCWGC 3 cut(s) 539, 620, 907
TspDTI ATGAA 6 cut(s) 26, 82, 89, 353, 876, 971
TspGWI ACGGA 6 cut(s) 170, 271, 434, 1086, 1133, 1173
TspMI CCCGGG 1 cut(s) 397
Van91I CCANNNNNTGG 1 cut(s) 1124
VpaK11BI GGWCC 6 cut(s) 353, 509, 788, 917, 1094, 1286
XapI RAATTY 2 cut(s) 304, 405
XmaI CCCGGG 1 cut(s) 397
XmaJI CCTAGG 1 cut(s) 227
XmiI GTMKAC 1 cut(s) 849
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 2 cut(s) 228, 543
Zsp2I ATGCAT 1 cut(s) 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.